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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073696 ID=TCONS_00073696|Name=TCONS_00073696|organism=Clytia hemisphaerica|type=transcript|length=4647bpRun BLAST on NCBI protein sequence of TCONS_00073696-protein >TCONS_00073696-protein ID=TCONS_00073696-protein|Name=TCONS_00073696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=939bp MTISRIKTGILSLTNGELLHGLPFEIWRIVLAFLCAKDLCCCSQVCKDWRRun BLAST on NCBI transcript from alignment at scaffold_97:47343..60160- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073696 ID=TCONS_00073696|Name=TCONS_00073696|organism=Clytia hemisphaerica|type=transcript|length=12818bp|location=Sequence derived from alignment at scaffold_97:47343..60160- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_97:47343..60160- >TCONS_00073696 ID=TCONS_00073696|Name=TCONS_00073696|organism=Clytia hemisphaerica|type=CDS|length=28200bp|location=Sequence derived from alignment at scaffold_97:47343..60160- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073696 vs. Swiss-Prot (Human)
Match: FBX10 (F-box only protein 10 OS=Homo sapiens GN=FBXO10 PE=1 SV=3) HSP 1 Score: 314.694 bits (805), Expect = 1.852e-89 Identity = 185/490 (37.76%), Postives = 268/490 (54.69%), Query Frame = 2
Query: 1301 DSNTRGILKTAQGVIINNIRVSNGWGGITVYRMGQAWIENSTFHNLVYGIRCLQSSKCIILNNKIHDCETMGVFFRDHSTGLVAGNQIFSNGEAGIDIRSNANPIIQHNEIYGGQRSGVVCLENGKGMIRENDIYNNKEAAIYILHHGNPKIKNNFICSGKASGIAVTENGRGHITQNVITGMEWAGIDVRHGGNPVISHNIIKNGQSDGIVIGDQGKSVIFDNTIEGNSGCGIWILDGSHPLVHSNRIIYSGSNGIAFVSKSDQEHDRKFESHLIQNDPSSRQXXXXXXXXXXXXXXXXXXXXVDGFIFEEDGFPIAPINFALPEIEPESRYIHVSKPDKTVAQIESNHVENNRGCGILYDGKEGIVISKNRISGNSKHGIALLRSNEIT-IDRNTIRNNLLSGINVEVGVCCSIHKNGIYDNKEHGIHSGGLGLIKL-NDILSHASPSLFIRTYGNLTVTQNRLHSWKHECVFVEEKCRVILEENEFF 2764
D + + QG +I +G GG+ V G+A +E + F NL Y +RC+ +SK I+L N I+ C G+F R GL+AGN I+ N EAG+DIR +NP+I N+I+ G RSG+V L NGKG+IR N I++NKEA IYIL+HGNP + N I G+A+GIAV ENG+G IT+NVI +W G+D+R GG PV+ N+I G SDG+V+GD+GK +I NTI N GCG+W++ S P V SN + Y+G G+A S+ D + H Q + F EDG I L E E E + +P T+A +ESN + +N G+ E + + N I N GI + +S++ T + N+I N SG+ VE + NGIYDN+ HGI + G I + NDI+ + L + + V +NR+HS++ + V + + +++EN F
Sbjct: 417 DKEAMALANSVQGCLIRKCLFRDGKGGVFVCSHGRAKMEGNIFRNLTYAVRCIHNSKIIMLRNDIYRCRASGIFLRLEGGGLIAGNNIYHNAEAGVDIRKKSNPLILCNQIHHGLRSGIVVLGNGKGIIRNNQIFSNKEAGIYILYHGNPVVSGNHIFKGRAAGIAVNENGKGLITENVIRENQWGGVDIRRGGIPVLRSNLICFGYSDGVVVGDEGKGLIEGNTIYANKGCGVWMMSSSLPHVTSNHVSYNGLYGVAVFSQKDGSSELP-RGHRAQEN------------------------------FSEDGDAI------LWETELEKEDDPLRRP-ITIALVESNSINHNGASGLYVQSSEALHVITNVIHANGDRGITVAQSSQPTRVANNSISCNRQSGVKVEAQCKVELRGNGIYDNRGHGIITKGDSTIVIENDIIGNRGSGLQLLPRSDTKVIKNRIHSFRAYGIAVRGRAKALVQENIIF 868 HSP 2 Score: 155.992 bits (393), Expect = 2.850e-38 Identity = 83/258 (32.17%), Postives = 136/258 (52.71%), Query Frame = 2
Query: 197 GLPFEIWRIVLAFLCAKDLCCCSQVCKDWRALVDSLDTTRWKQIYLLQERTKRWKHPNWPNESSSSPALKSTWKDLYRKRFQLSRLWLRNQVAASCVVPF-LFPRRKSPRTFHVGLGKQYQTIKAALDKASPYAKIIVHPGTYQDSSILYLKYPIAILGIDDASNITLMMQIEIRCDSVKMENLTIKPLYVRARGRGSSTAIIRALTGHLCLFNCIVTQGCISVVSPGSVTVLNCTFTSAFIKFVGVGYSSITGTDFI 967
GLP E+WR++LA+L DL CS VC+ W L+ SLD+TRW+Q+ L +HPNWPN+ P +W++ +++ + S+ W +N + + F LF RR+ RT VG G+++ ++ +AL AS Y +I++ PG Y++ + LK P+ I+G + L+ I+ C + ++ NL P + S + + +GH+ NC G I V PG+ V CTF + I V + +F+
Sbjct: 5 GLPLELWRMILAYLHLPDLGRCSLVCRAWYELILSLDSTRWRQLCL---GCTECRHPNWPNQPDVEP---ESWREAFKQHYLASKTWTKNALDLESSICFSLFRRRRERRTLSVGPGREFDSLGSALAMASLYDRIVLFPGVYEEQGEIILKVPVEIVGQGKLGEVALLASIDQHCSTTRLCNLVFTPAWF-------SPIMYKTTSGHVQFDNCNFENGHIQVHGPGTCQVKFCTFKNTHIFLHNVPLCVLENCEFV 249 The following BLAST results are available for this feature:
BLAST of TCONS_00073696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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