TCONS_00073614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073614
Unique NameTCONS_00073614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073614 ID=TCONS_00073614|Name=TCONS_00073614|organism=Clytia hemisphaerica|type=transcript|length=1250bp
CGTTTATATACATTTACTTTGACAAATTATCTTCATATTCTCATATTATC
TTGTTAAATagccaaaacataaaaaaattatcaacaaaaTGGAGAGAAGG
ACTGAAGAGGTGATTAAAGACGTCAAAATGAGAGCCAGACCTGAACTGAA
AAGCCTCGAAGGCTGGCAGCGACTTGGTTACGCTGATTCATTTGACGCTT
CACTAAGCAGGCCGTGTGATAACGTGCCAAGGGTCGATTGCAGTACTTTA
TCACACCAAGATTTTATTGAACAATATGAGAAAAAATGTAAACCTGTTGT
ATTAACTGGATGTCAGAAACACTGGTTGGCCAATAGGAAGTGGACTTTAA
AGAAACTAGCGAAGAAATATCGCAATCAAAAGTTCAAAGTGGGCGAGGAC
GACGATGGTTATTCGgtgaaaatgaaattcaaatatTATTACGAATATTT
GAAACGACAGAACGATGACAGTCCTCTCTACATATTTGATGGTTCTTATG
GCGAGcATTCACGTAAAAGGAAGCTACTGCAAGATTACGCACCTCCGACT
TTCTTCCAAGACGATTTGTTTCGGTATGCAAGCGAGAAAAGAAGACCTCC
TTACAGGTGGGTTGTGATCGGACCATCTCGTTCAGGTACTGGAATACACA
TCGACCCTCTGGGCACAAGTGCTTGGAACGCGTTGTTAAGCGGACATAAG
TGGTGGGTCATGCTACCAACGGAAACACCCAAACACATGATCACCGTACC
TAAAGGCGAAGGTCAACACCAGTCTGGAGAAGGCGTTCAGTGGTTCCAAA
AAGTCTACCCTAAAATCAAAAGTCCAACATGGCCGAAAGAATACGCTCCG
TTGGAGATCCTACAGAAACCTGGGGAGACTGTCTTCGTACCCGGTGGATG
GTGGCATGTCGTGTTGAACCTGGGTCAAACAGTGGCTGTCACACAAAACT
TCGCTTCACCTACTAACTTTCACATCGTCTGGCACAAGACCGTTCGAAGT
CGACCCAAATTATCTAAGTACTGGCTAAGTCAACTCAGAATGTATCGACC
GGAGATAGCCAAGATAGCGGACCAAGTCAACATCACCGGTAGCAGTGGCA
TTGCATCCGATTCAAGTTCAAGCAGTTCCAGCAGTTCCAGTTCTTCCGAA
TCGGATACCGATTCTGAAGATTCTTCACCCGATTCGGTTTACGAAGATGA
TGATCGACGAGAAATTCGGGAAAACGGACAATCTTCTCCTAAAAGGTAat
Run BLAST on NCBI

protein sequence of TCONS_00073614-protein

>TCONS_00073614-protein ID=TCONS_00073614-protein|Name=TCONS_00073614-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MERRTEEVIKDVKMRARPELKSLEGWQRLGYADSFDASLSRPCDNVPRVD
CSTLSHQDFIEQYEKKCKPVVLTGCQKHWLANRKWTLKKLAKKYRNQKFK
VGEDDDGYSVKMKFKYYYEYLKRQNDDSPLYIFDGSYGEHSRKRKLLQDY
APPTFFQDDLFRYASEKRRPPYRWVVIGPSRSGTGIHIDPLGTSAWNALL
SGHKWWVMLPTETPKHMITVPKGEGQHQSGEGVQWFQKVYPKIKSPTWPK
EYAPLEILQKPGETVFVPGGWWHVVLNLGQTVAVTQNFASPTNFHIVWHK
TVRSRPKLSKYWLSQLRMYRPEIAKIADQVNITGSSGIASDSSSSSSSSS
SSSESDTDSEDSSPDSVYEDDDRREIRENGQSSPKR
Run BLAST on NCBI

transcript from alignment at scaffold_96:11387..15348+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073614 ID=TCONS_00073614|Name=TCONS_00073614|organism=Clytia hemisphaerica|type=transcript|length=3962bp|location=Sequence derived from alignment at scaffold_96:11387..15348+ (Clytia hemisphaerica)
CGTTTATATACATTTACTTTGACAAATTATCTTCATATTCTCATATTATC
TTGTTAAATagccaaaacataaaaaaattatcaacaaaaTGGAGAGAAGG
ACTGAAGAGGTGATTAAAGACGTCAAAATGAGAGCCAGACCTGgtgaata
tttttaacttttttagaaaTGATAATCGATATAAGAATTCATGCTATCCG
TGTATCAATCAAggcatttcaaattttcattccttTAAAAATAGTTACCA
GAGGCAAAGGTTGGTATTTCTCGGCGAGAGGGGCTATTAATAACGACGAA
CGAAATTAGTCCTCAAACTTCAGAATTGCTTTAAATACCCTCTCATTTTT
CTTCAGAACTGAAAAGCCTCGAAGGCTGGCAGCGACTTGGTTACGCTGAT
TCATTTGACGCTTCACTAAGCAGGCCGTGTGATAACGTGCCAAGGGTCGA
TTGCAGTACTTTATCACACCAAGATTTTATTGAACAATATGAGAAAAAAT
GTAAACCTGTTGTATTAACTGGATGTCAGAAACACTGGTTGGCCAATAGG
AAGTGGACTTTAAAGGTGAATAATACACTATGGGTAGGAATTCGTAAAAG
AAAATCTCCAAAcgaaaaatgttccaaaaattgtgaaaatctaCTTTCGT
ACTCTCTTTCGATCGTTATTATAAAGGCCGTTGAGATGTTGATTTACATT
ACAAAATGAGATGCACAGAGAAAAATAGCACAACATTAGCTCTAAATTAC
TTGAAGGTGACTAAGTGATATTTTTGTTAGACCCTAGCGTTTGATCATTA
ACCCCAGTATGTGAATCAGCCTGCCTGCTTTATTTAGCTTACATTTTTTC
TTATCTGATGACTTGCTTCTCCTTACGAAGGATGCCCGGTTCTGTATTGA
ATGGTCTATGAGTCGTCTCGTTAGAGCCGTCCTACGCTTTATTTTCTGGA
TCAAGTGCGTTAATCCGGCGCGAACCACTAATGGCGGATTAACGCACTTG
ATCAAAAAAATATAGCGTAAGACGGTTCTCTGATCCTTAGTTCCCTAAGG
CAAGCGAACTCTCACCTCATCCACGGTGTATTGTGGAATGGAAGTCTAGT
ATGCGAATCGACTTGCCTCCGTTAAGCTTTCACTCTTTACTATCTACTAC
TACCATAGAAACTAGCGAAGAAATATCGCAATCAAAAGTTCAAAGTGGGC
GAGGACGACGATGGTTATTCGgtgaaaatgaaattcaaatatTATTACGA
ATATTTGAAACGACAGAACGATGACAGTCCTCTCTACATATTTGATGGTT
CTTATGGCGAGGTAAGTTTTCTAACTAAAAAGTTTAGGACTCAGAACTGG
ATTAATCGTTTTGGTTATTATGGTAGTTTTGGGTTCAATCTCTGGCTGGC
TATCTGCTAAATGCTCAGCTTTCTAagggaaggatcaagggtaaatgTAG
AAAATCCAGGCAgaaaatccagggagaaagagtggcgccctcacCCTACA
TTCGAGTAAAAGGTTTCGAAAGAGCGAAGCCTTCGAGCCACCTTGTATTG
TGGTCGCAAGACGAGCTCAAGGATCTTcgtcaattttagaaaataaattc
acAAGATTTCAAAGAGTTCTTCTCCATTAGTTTTCTTTATATAAAGTCAC
TTACTTTTTTTCCTTCCAGCCTGTTTTTTTTCGGTACTTGAGAGTAAGAC
TAAGATATTAATTTATATCTTCGTAAAGGCACAGATACCAGTAATTTTCG
CAGATTATCTTGTGTAGCCAACCATTAGGTTACATGTGCGCCTTGAATGG
AGCAATCAGACATGCTCGGAGTTTATGATGTCTTTTCcgcctcttttttt
ttcatcaagcATTCACGTAAAAGGAAGCTACTGCAAGATTACGCACCTCC
GACTTTCTTCCAAGACGATTTGTTTCGGTATGCAAGCGAGAAAAGAAGAC
CTCCTTACAGGTTAGTtgacaaaaatgaagtttttttaacattCATACAC
ATAATTAAGGTTTAGGCCTAATATTGACATCGTAGGGAGGGGGCATTATG
AATTTTGCTGTGATTGAGAATTTCTCTAGTACAAGGTttgatttctgaaa
attttttagaatatttcaGGCCCCAGATTTTTTAGGTAAATTTTGGCTAT
AGATCTCCCTGAAAAAGTGCCTTTAtagtttctattttttttaattaaca
cACTTTTaggagaatttttttaacctcGCTAAGCCCCACACCCTCTAACC
ATTCTATTTCTGTAGACTAAAATGTCGCCAATTTCTATAATACAGGTGGG
TTGTGATCGGACCATCTCGTTCAGGTACTGGAATACACATCGACCCTCTG
GGCACAAGTGCTTGGAACGCGTTGTTAAGCGGACATAAGTGGTGGGTCAT
GCTACCAACGGAAACACCCAAACACATGATCACCGTACCTAAAGGTCTGC
ttatagaatttttttgagTAGAATGGATATGAGTCATGATAGCGTGTAGC
TAGCTAgaatatttatctttttaatttcaagtTTAAGAAGCTAACTCCAA
AAAACTACTTTATGCAAATAGATTCGCCATAATTCCACGATTCTTTATTA
TAGGGCTAAGTTTAATACCCTTcgacatcaaaaataaattcaccCAAGAC
CCCTTTCTCTGAACAAATTGTCGGCCGACATGTTTTCCTATGGTACGATT
TGACGACACTTCCTAATTTCTAAATGACCCTTTGTGAAGAGCTATAATTG
CCAACCATTAAATAACACAATGTTATTATGTAACATAAACAACTGAACTT
GCTTTTTCACAGGCGAAGGTCAACACCAGTCTGGAGAAGGCGTTCAGTGG
TTCCAAAAAGTCTACCCTAAAATCAAAAGTCCAACATGGCCGAAAGAATA
CGCTCCGGTATGCAAATTtatatttctttaaatttcCAGAACAAGGCtta
attttagcaaaaatctAGTAAGAATAAAACAAAAGCCGAGGCTCGAAATG
AATAAGAAATTTCTTGTAACAGCAGAAACATTTCGAGGAAACAATGAGTA
CCTATCTCGTTTGAAATACAGTATTGAATGGAGGATGGATGTTTCAGGCT
TGAAGTAAGTTACATGAAATATTGAATATTCTTGACAAATCACGGTGGCA
TTACCTAATATTTTCTTCCTTGAAATGGGCGATTAAGTCCAGCAGTTTCA
TTTTGAAAACCCCTTTCTGAACCAAATCGGACTAAACATCGTTGGGCTTT
TTTGTAGTTGGAGATCCTACAGAAACCTGGGGAGACTGTCTTCGTACCCG
GTGGATGGTGGCATGTCGTGTTGAACCTGGGTCAAACAGTGGCTGTCACA
CAAAACTTCGCTTCACCTACTAACTTTCACATCGTCTGGCACAAGACCGT
TCGAAGTCGACCCAAATTATCTAAGTACTGGCTAAGTCAACTCAGAGTAA
GTAGTACTGTATTTTTTGCCTTGTTTATGTATTAAAATTGAGTACAAATC
TATTCCAATTTTCAAGGAAGAAGTTTAAACTTTTTCGGAGAGTTCTTGCG
AAGTTGTGAATTGTAATAATGGGCTTTTTTAATCTCGCATTAAATCCAAA
GTATAAGGCTATATACTGATGCGTTTTTCAGACTTGATGGCAGCCACTCT
AtaaacttttaaagtttttaaacttttaaagtaTTGGATAAACTAATCTC
GAAAATACTTTATGTGCTTGcaaattaaaaacaatcaaCTTCTTTTCATA
GATGTATCGACCGGAGATAGCCAAGATAGCGGACCAAGTCAACATCACCG
GTAGCAGTGGCATTGCATCCGATTCAAGTTCAAGCAGTTCCAGCAGTTCC
AGTTCTTCCGAATCGGATACCGATTCTGAAGATTCTTCACCCGATTCGGT
TTACGAAGATGATGATCGACGAGAAATTCGGGAAAACGGACAATCTTCTC
CTAAAAGGTAat

Coding sequence (CDS) from alignment at scaffold_96:11387..15348+

>TCONS_00073614 ID=TCONS_00073614|Name=TCONS_00073614|organism=Clytia hemisphaerica|type=CDS|length=9288bp|location=Sequence derived from alignment at scaffold_96:11387..15348+ (Clytia hemisphaerica)
aTGGAGAGAAGGACTGAAGAGGTGATTAAAGACGTCAAAATGAGAGCCAG
ACCTGAACTGAAAAGCCTCGAAGGCTGGCAGCGACTTGGTTACGCTGATT
CATTTGACGCTTCACTAAGCAGGCCGTGTGATAACGTGCCAAGGGTCGAT
TGCAGTACTTTATCACACCAAGATTTTATTGAACAATATGAGAAAAAATG
TAAACCTGTTGTATTAACTGGATGTCAGAAACACTGGTTGGCCAATAGGA
AGTGGACTTTAAAGAAACTAGCGAAGAAATATCGCAATCAAAAGTTCAAA
GTGGGCGAGGACGACGATGGTTATTCGgtgaaaatgaaattcaaatatTA
TTACGAATATTTGAAACGACAGAACGATGACAGTCCTCTCTACATATTTG
ATGGTTCTTATGGCGAGcATTCACGTAAAAGGAAGCTACTGCAAGATTAC
GCACCTCCGACTTTCTTCCAAGACGATTTGTTTCGGTATGCAAGCGAGAA
AAGAAGACCTCCTTACAGGTGGGTTGTGATCGGACCATCTCGTTCAGGTA
CTGGAATACACATCGACCCTCTGGGCACAAGTGCTTGGAACGCGTTGTTA
AGCGGACATAAGTGGTGGGTCATGCTACCAACGGAAACACCCAAACACAT
GATCACCGTACCTAAAGGCGAAGGTCAACACCAGTCTGGAGAAGGCGTTC
AGTGGTTCCAAAAAGTCTACCCTAAAATCAAAAGTCCAACATGGCCGAAA
GAATACGCTCCGTTGGAGATCCTACAGAAACCTGGGGAGACTGTCTTCGT
ACCCGGTGGATGGTGGCATGTCGTGTTGAACCTGGGTCAAACAGTGGCTG
TCACACAAAACTTCGCTTCACCTACTAACTTTCACATCGTCTGGCACAAG
ACCGTTCGAAGTCGACCCAAATTATCTAAGTACTGGCTAAGTCAACTCAG
AATGTATCGACCGGAGATAGCCAAGATAGCGGACCAAGTCAACATCACCG
GTAGCAGTGGCATTGCATCCGATTCAAGTTCAAGCAGTTCCAGCAGTTCC
AGTTCTTCCGAATCGGATACCGATTCTGAAGATTCTTCACCCGATTCGGT
TTACGAAGATGATGATCGACGAGAAATTCGGGAAAACGGACAATCTTCTC
CTAAAAGGTAaaTGGAGAGAAGGACTGAAGAGGTGATTAAAGACGTCAAA
ATGAGAGCCAGACCTGAACTGAAAAGCCTCGAAGGCTGGCAGCGACTTGG
TTACGCTGATTCATTTGACGCTTCACTAAGCAGGCCGTGTGATAACGTGC
CAAGGGTCGATTGCAGTACTTTATCACACCAAGATTTTATTGAACAATAT
GAGAAAAAATGTAAACCTGTTGTATTAACTGGATGTCAGAAACACTGGTT
GGCCAATAGGAAGTGGACTTTAAAGAAACTAGCGAAGAAATATCGCAATC
AAAAGTTCAAAGTGGGCGAGGACGACGATGGTTATTCGgtgaaaatgaaa
ttcaaatatTATTACGAATATTTGAAACGACAGAACGATGACAGTCCTCT
CTACATATTTGATGGTTCTTATGGCGAGcATTCACGTAAAAGGAAGCTAC
TGCAAGATTACGCACCTCCGACTTTCTTCCAAGACGATTTGTTTCGGTAT
GCAAGCGAGAAAAGAAGACCTCCTTACAGGTGGGTTGTGATCGGACCATC
TCGTTCAGGTACTGGAATACACATCGACCCTCTGGGCACAAGTGCTTGGA
ACGCGTTGTTAAGCGGACATAAGTGGTGGGTCATGCTACCAACGGAAACA
CCCAAACACATGATCACCGTACCTAAAGGCGAAGGTCAACACCAGTCTGG
AGAAGGCGTTCAGTGGTTCCAAAAAGTCTACCCTAAAATCAAAAGTCCAA
CATGGCCGAAAGAATACGCTCCGTTGGAGATCCTACAGAAACCTGGGGAG
ACTGTCTTCGTACCCGGTGGATGGTGGCATGTCGTGTTGAACCTGGGTCA
AACAGTGGCTGTCACACAAAACTTCGCTTCACCTACTAACTTTCACATCG
TCTGGCACAAGACCGTTCGAAGTCGACCCAAATTATCTAAGTACTGGCTA
AGTCAACTCAGAATGTATCGACCGGAGATAGCCAAGATAGCGGACCAAGT
CAACATCACCGGTAGCAGTGGCATTGCATCCGATTCAAGTTCAAGCAGTT
CCAGCAGTTCCAGTTCTTCCGAATCGGATACCGATTCTGAAGATTCTTCA
CCCGATTCGGTTTACGAAGATGATGATCGACGAGAAATTCGGGAAAACGG
ACAATCTTCTCCTAAAAGGTAaaTGGAGAGAAGGACTGAAGAGGTGATTA
AAGACGTCAAAATGAGAGCCAGACCTGAACTGAAAAGCCTCGAAGGCTGG
CAGCGACTTGGTTACGCTGATTCATTTGACGCTTCACTAAGCAGGCCGTG
TGATAACGTGCCAAGGGTCGATTGCAGTACTTTATCACACCAAGATTTTA
TTGAACAATATGAGAAAAAATGTAAACCTGTTGTATTAACTGGATGTCAG
AAACACTGGTTGGCCAATAGGAAGTGGACTTTAAAGAAACTAGCGAAGAA
ATATCGCAATCAAAAGTTCAAAGTGGGCGAGGACGACGATGGTTATTCGg
tgaaaatgaaattcaaatatTATTACGAATATTTGAAACGACAGAACGAT
GACAGTCCTCTCTACATATTTGATGGTTCTTATGGCGAGcATTCACGTAA
AAGGAAGCTACTGCAAGATTACGCACCTCCGACTTTCTTCCAAGACGATT
TGTTTCGGTATGCAAGCGAGAAAAGAAGACCTCCTTACAGGTGGGTTGTG
ATCGGACCATCTCGTTCAGGTACTGGAATACACATCGACCCTCTGGGCAC
AAGTGCTTGGAACGCGTTGTTAAGCGGACATAAGTGGTGGGTCATGCTAC
CAACGGAAACACCCAAACACATGATCACCGTACCTAAAGGCGAAGGTCAA
CACCAGTCTGGAGAAGGCGTTCAGTGGTTCCAAAAAGTCTACCCTAAAAT
CAAAAGTCCAACATGGCCGAAAGAATACGCTCCGTTGGAGATCCTACAGA
AACCTGGGGAGACTGTCTTCGTACCCGGTGGATGGTGGCATGTCGTGTTG
AACCTGGGTCAAACAGTGGCTGTCACACAAAACTTCGCTTCACCTACTAA
CTTTCACATCGTCTGGCACAAGACCGTTCGAAGTCGACCCAAATTATCTA
AGTACTGGCTAAGTCAACTCAGAATGTATCGACCGGAGATAGCCAAGATA
GCGGACCAAGTCAACATCACCGGTAGCAGTGGCATTGCATCCGATTCAAG
TTCAAGCAGTTCCAGCAGTTCCAGTTCTTCCGAATCGGATACCGATTCTG
AAGATTCTTCACCCGATTCGGTTTACGAAGATGATGATCGACGAGAAATT
CGGGAAAACGGACAATCTTCTCCTAAAAGGTAaaTGGAGAGAAGGACTGA
AGAGGTGATTAAAGACGTCAAAATGAGAGCCAGACCTGAACTGAAAAGCC
TCGAAGGCTGGCAGCGACTTGGTTACGCTGATTCATTTGACGCTTCACTA
AGCAGGCCGTGTGATAACGTGCCAAGGGTCGATTGCAGTACTTTATCACA
CCAAGATTTTATTGAACAATATGAGAAAAAATGTAAACCTGTTGTATTAA
CTGGATGTCAGAAACACTGGTTGGCCAATAGGAAGTGGACTTTAAAGAAA
CTAGCGAAGAAATATCGCAATCAAAAGTTCAAAGTGGGCGAGGACGACGA
TGGTTATTCGgtgaaaatgaaattcaaatatTATTACGAATATTTGAAAC
GACAGAACGATGACAGTCCTCTCTACATATTTGATGGTTCTTATGGCGAG
cATTCACGTAAAAGGAAGCTACTGCAAGATTACGCACCTCCGACTTTCTT
CCAAGACGATTTGTTTCGGTATGCAAGCGAGAAAAGAAGACCTCCTTACA
GGTGGGTTGTGATCGGACCATCTCGTTCAGGTACTGGAATACACATCGAC
CCTCTGGGCACAAGTGCTTGGAACGCGTTGTTAAGCGGACATAAGTGGTG
GGTCATGCTACCAACGGAAACACCCAAACACATGATCACCGTACCTAAAG
GCGAAGGTCAACACCAGTCTGGAGAAGGCGTTCAGTGGTTCCAAAAAGTC
TACCCTAAAATCAAAAGTCCAACATGGCCGAAAGAATACGCTCCGTTGGA
GATCCTACAGAAACCTGGGGAGACTGTCTTCGTACCCGGTGGATGGTGGC
ATGTCGTGTTGAACCTGGGTCAAACAGTGGCTGTCACACAAAACTTCGCT
TCACCTACTAACTTTCACATCGTCTGGCACAAGACCGTTCGAAGTCGACC
CAAATTATCTAAGTACTGGCTAAGTCAACTCAGAATGTATCGACCGGAGA
TAGCCAAGATAGCGGACCAAGTCAACATCACCGGTAGCAGTGGCATTGCA
TCCGATTCAAGTTCAAGCAGTTCCAGCAGTTCCAGTTCTTCCGAATCGGA
TACCGATTCTGAAGATTCTTCACCCGATTCGGTTTACGAAGATGATGATC
GACGAGAAATTCGGGAAAACGGACAATCTTCTCCTAAAAGGTAaaTGGAG
AGAAGGACTGAAGAGGTGATTAAAGACGTCAAAATGAGAGCCAGACCTGA
ACTGAAAAGCCTCGAAGGCTGGCAGCGACTTGGTTACGCTGATTCATTTG
ACGCTTCACTAAGCAGGCCGTGTGATAACGTGCCAAGGGTCGATTGCAGT
ACTTTATCACACCAAGATTTTATTGAACAATATGAGAAAAAATGTAAACC
TGTTGTATTAACTGGATGTCAGAAACACTGGTTGGCCAATAGGAAGTGGA
CTTTAAAGAAACTAGCGAAGAAATATCGCAATCAAAAGTTCAAAGTGGGC
GAGGACGACGATGGTTATTCGgtgaaaatgaaattcaaatatTATTACGA
ATATTTGAAACGACAGAACGATGACAGTCCTCTCTACATATTTGATGGTT
CTTATGGCGAGcATTCACGTAAAAGGAAGCTACTGCAAGATTACGCACCT
CCGACTTTCTTCCAAGACGATTTGTTTCGGTATGCAAGCGAGAAAAGAAG
ACCTCCTTACAGGTGGGTTGTGATCGGACCATCTCGTTCAGGTACTGGAA
TACACATCGACCCTCTGGGCACAAGTGCTTGGAACGCGTTGTTAAGCGGA
CATAAGTGGTGGGTCATGCTACCAACGGAAACACCCAAACACATGATCAC
CGTACCTAAAGGCGAAGGTCAACACCAGTCTGGAGAAGGCGTTCAGTGGT
TCCAAAAAGTCTACCCTAAAATCAAAAGTCCAACATGGCCGAAAGAATAC
GCTCCGTTGGAGATCCTACAGAAACCTGGGGAGACTGTCTTCGTACCCGG
TGGATGGTGGCATGTCGTGTTGAACCTGGGTCAAACAGTGGCTGTCACAC
AAAACTTCGCTTCACCTACTAACTTTCACATCGTCTGGCACAAGACCGTT
CGAAGTCGACCCAAATTATCTAAGTACTGGCTAAGTCAACTCAGAATGTA
TCGACCGGAGATAGCCAAGATAGCGGACCAAGTCAACATCACCGGTAGCA
GTGGCATTGCATCCGATTCAAGTTCAAGCAGTTCCAGCAGTTCCAGTTCT
TCCGAATCGGATACCGATTCTGAAGATTCTTCACCCGATTCGGTTTACGA
AGATGATGATCGACGAGAAATTCGGGAAAACGGACAATCTTCTCCTAAAA
GGTAaaTGGAGAGAAGGACTGAAGAGGTGATTAAAGACGTCAAAATGAGA
GCCAGACCTGAACTGAAAAGCCTCGAAGGCTGGCAGCGACTTGGTTACGC
TGATTCATTTGACGCTTCACTAAGCAGGCCGTGTGATAACGTGCCAAGGG
TCGATTGCAGTACTTTATCACACCAAGATTTTATTGAACAATATGAGAAA
AAATGTAAACCTGTTGTATTAACTGGATGTCAGAAACACTGGTTGGCCAA
TAGGAAGTGGACTTTAAAGAAACTAGCGAAGAAATATCGCAATCAAAAGT
TCAAAGTGGGCGAGGACGACGATGGTTATTCGgtgaaaatgaaattcaaa
tatTATTACGAATATTTGAAACGACAGAACGATGACAGTCCTCTCTACAT
ATTTGATGGTTCTTATGGCGAGcATTCACGTAAAAGGAAGCTACTGCAAG
ATTACGCACCTCCGACTTTCTTCCAAGACGATTTGTTTCGGTATGCAAGC
GAGAAAAGAAGACCTCCTTACAGGTGGGTTGTGATCGGACCATCTCGTTC
AGGTACTGGAATACACATCGACCCTCTGGGCACAAGTGCTTGGAACGCGT
TGTTAAGCGGACATAAGTGGTGGGTCATGCTACCAACGGAAACACCCAAA
CACATGATCACCGTACCTAAAGGCGAAGGTCAACACCAGTCTGGAGAAGG
CGTTCAGTGGTTCCAAAAAGTCTACCCTAAAATCAAAAGTCCAACATGGC
CGAAAGAATACGCTCCGTTGGAGATCCTACAGAAACCTGGGGAGACTGTC
TTCGTACCCGGTGGATGGTGGCATGTCGTGTTGAACCTGGGTCAAACAGT
GGCTGTCACACAAAACTTCGCTTCACCTACTAACTTTCACATCGTCTGGC
ACAAGACCGTTCGAAGTCGACCCAAATTATCTAAGTACTGGCTAAGTCAA
CTCAGAATGTATCGACCGGAGATAGCCAAGATAGCGGACCAAGTCAACAT
CACCGGTAGCAGTGGCATTGCATCCGATTCAAGTTCAAGCAGTTCCAGCA
GTTCCAGTTCTTCCGAATCGGATACCGATTCTGAAGATTCTTCACCCGAT
TCGGTTTACGAAGATGATGATCGACGAGAAATTCGGGAAAACGGACAATC
TTCTCCTAAAAGGTAaaTGGAGAGAAGGACTGAAGAGGTGATTAAAGACG
TCAAAATGAGAGCCAGACCTGAACTGAAAAGCCTCGAAGGCTGGCAGCGA
CTTGGTTACGCTGATTCATTTGACGCTTCACTAAGCAGGCCGTGTGATAA
CGTGCCAAGGGTCGATTGCAGTACTTTATCACACCAAGATTTTATTGAAC
AATATGAGAAAAAATGTAAACCTGTTGTATTAACTGGATGTCAGAAACAC
TGGTTGGCCAATAGGAAGTGGACTTTAAAGAAACTAGCGAAGAAATATCG
CAATCAAAAGTTCAAAGTGGGCGAGGACGACGATGGTTATTCGgtgaaaa
tgaaattcaaatatTATTACGAATATTTGAAACGACAGAACGATGACAGT
CCTCTCTACATATTTGATGGTTCTTATGGCGAGcATTCACGTAAAAGGAA
GCTACTGCAAGATTACGCACCTCCGACTTTCTTCCAAGACGATTTGTTTC
GGTATGCAAGCGAGAAAAGAAGACCTCCTTACAGGTGGGTTGTGATCGGA
CCATCTCGTTCAGGTACTGGAATACACATCGACCCTCTGGGCACAAGTGC
TTGGAACGCGTTGTTAAGCGGACATAAGTGGTGGGTCATGCTACCAACGG
AAACACCCAAACACATGATCACCGTACCTAAAGGCGAAGGTCAACACCAG
TCTGGAGAAGGCGTTCAGTGGTTCCAAAAAGTCTACCCTAAAATCAAAAG
TCCAACATGGCCGAAAGAATACGCTCCGTTGGAGATCCTACAGAAACCTG
GGGAGACTGTCTTCGTACCCGGTGGATGGTGGCATGTCGTGTTGAACCTG
GGTCAAACAGTGGCTGTCACACAAAACTTCGCTTCACCTACTAACTTTCA
CATCGTCTGGCACAAGACCGTTCGAAGTCGACCCAAATTATCTAAGTACT
GGCTAAGTCAACTCAGAATGTATCGACCGGAGATAGCCAAGATAGCGGAC
CAAGTCAACATCACCGGTAGCAGTGGCATTGCATCCGATTCAAGTTCAAG
CAGTTCCAGCAGTTCCAGTTCTTCCGAATCGGATACCGATTCTGAAGATT
CTTCACCCGATTCGGTTTACGAAGATGATGATCGACGAGAAATTCGGGAA
AACGGACAATCTTCTCCTAAAAGGTAaaTGGAGAGAAGGACTGAAGAGGT
GATTAAAGACGTCAAAATGAGAGCCAGACCTGAACTGAAAAGCCTCGAAG
GCTGGCAGCGACTTGGTTACGCTGATTCATTTGACGCTTCACTAAGCAGG
CCGTGTGATAACGTGCCAAGGGTCGATTGCAGTACTTTATCACACCAAGA
TTTTATTGAACAATATGAGAAAAAATGTAAACCTGTTGTATTAACTGGAT
GTCAGAAACACTGGTTGGCCAATAGGAAGTGGACTTTAAAGAAACTAGCG
AAGAAATATCGCAATCAAAAGTTCAAAGTGGGCGAGGACGACGATGGTTA
TTCGgtgaaaatgaaattcaaatatTATTACGAATATTTGAAACGACAGA
ACGATGACAGTCCTCTCTACATATTTGATGGTTCTTATGGCGAGcATTCA
CGTAAAAGGAAGCTACTGCAAGATTACGCACCTCCGACTTTCTTCCAAGA
CGATTTGTTTCGGTATGCAAGCGAGAAAAGAAGACCTCCTTACAGGTGGG
TTGTGATCGGACCATCTCGTTCAGGTACTGGAATACACATCGACCCTCTG
GGCACAAGTGCTTGGAACGCGTTGTTAAGCGGACATAAGTGGTGGGTCAT
GCTACCAACGGAAACACCCAAACACATGATCACCGTACCTAAAGGCGAAG
GTCAACACCAGTCTGGAGAAGGCGTTCAGTGGTTCCAAAAAGTCTACCCT
AAAATCAAAAGTCCAACATGGCCGAAAGAATACGCTCCGTTGGAGATCCT
ACAGAAACCTGGGGAGACTGTCTTCGTACCCGGTGGATGGTGGCATGTCG
TGTTGAACCTGGGTCAAACAGTGGCTGTCACACAAAACTTCGCTTCACCT
ACTAACTTTCACATCGTCTGGCACAAGACCGTTCGAAGTCGACCCAAATT
ATCTAAGTACTGGCTAAGTCAACTCAGAATGTATCGACCGGAGATAGCCA
AGATAGCGGACCAAGTCAACATCACCGGTAGCAGTGGCATTGCATCCGAT
TCAAGTTCAAGCAGTTCCAGCAGTTCCAGTTCTTCCGAATCGGATACCGA
TTCTGAAGATTCTTCACCCGATTCGGTTTACGAAGATGATGATCGACGAG
AAATTCGGGAAAACGGACAATCTTCTCCTAAAAGGTAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045714XLOC_045714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073614-exon-scaffold_96-1491911889:11387..11529TCONS_00073614-exon-scaffold_96-1491911889:11387..11529Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:11387..11529TCONS_00073614-exon-scaffold_96-1510915933:11387..11529Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:11387..11529TCONS_00073614-exon-scaffold_96-1575043694:11387..11529Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1491911889:11743..11951TCONS_00073614-exon-scaffold_96-1491911889:11743..11951Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:11743..11951TCONS_00073614-exon-scaffold_96-1510915933:11743..11951Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:11743..11951TCONS_00073614-exon-scaffold_96-1575043694:11743..11951Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1491911889:12545..12697TCONS_00073614-exon-scaffold_96-1491911889:12545..12697Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:12545..12697TCONS_00073614-exon-scaffold_96-1510915933:12545..12697Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:12545..12697TCONS_00073614-exon-scaffold_96-1575043694:12545..12697Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1491911889:13246..13346TCONS_00073614-exon-scaffold_96-1491911889:13246..13346Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:13246..13346TCONS_00073614-exon-scaffold_96-1510915933:13246..13346Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:13246..13346TCONS_00073614-exon-scaffold_96-1575043694:13246..13346Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1491911889:13682..13830TCONS_00073614-exon-scaffold_96-1491911889:13682..13830Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:13682..13830TCONS_00073614-exon-scaffold_96-1510915933:13682..13830Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:13682..13830TCONS_00073614-exon-scaffold_96-1575043694:13682..13830Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1491911889:14199..14293TCONS_00073614-exon-scaffold_96-1491911889:14199..14293Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:14199..14293TCONS_00073614-exon-scaffold_96-1510915933:14199..14293Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:14199..14293TCONS_00073614-exon-scaffold_96-1575043694:14199..14293Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1491911889:14644..14832TCONS_00073614-exon-scaffold_96-1491911889:14644..14832Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:14644..14832TCONS_00073614-exon-scaffold_96-1510915933:14644..14832Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:14644..14832TCONS_00073614-exon-scaffold_96-1575043694:14644..14832Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1491911889:15138..15348TCONS_00073614-exon-scaffold_96-1491911889:15138..15348Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1510915933:15138..15348TCONS_00073614-exon-scaffold_96-1510915933:15138..15348Clytia hemisphaericaexon
TCONS_00073614-exon-scaffold_96-1575043694:15138..15348TCONS_00073614-exon-scaffold_96-1575043694:15138..15348Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073614-proteinTCONS_00073614-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_96supercontigscaffold_96:11387..15348 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.3705	30.9389	34.8337	37.2541	34.9293	22.1391	30.8239	32.5069	24.4253	24.1177	23.2057	21.1702	36.5445	38.1704	22.6928	18.4563	24.2578	25.5541	12.5888	9.32918	19.0961	19.305	34.5246	33.0599	53.8777	54.0996	11.0002	9.8088	18.2192	19.2875
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
Blast
[Close]
BLAST of TCONS_00073614 vs. Swiss-Prot (Human)
Match: JMJD6 (Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6 OS=Homo sapiens GN=JMJD6 PE=1 SV=1)

HSP 1 Score: 434.106 bits (1115), Expect = 2.024e-149
Identity = 202/332 (60.84%), Postives = 247/332 (74.40%), Query Frame = 2 
Query:   89 MERRTEEVIKDVKMRARPELKSLEGWQRLGYADSFDASLSRPCDNVPRVDCSTLSHQDFIEQYEKKCKPVVLTGCQKHWLANRKWTLKKLAKKYRNQKFKVGEDDDGYSVKMKFKYYYEYLKRQNDDSPLYIFDGSYGEHSRKRKLLQDYAPPTFFQDDLFRYASEKRRPPYRWVVIGPSRSGTGIHIDPLGTSAWNALLSGHKWWVMLPTETPKHMITVPKGEGQHQSGEGVQWFQKVYPKIKSPTWPKEYAPLEILQKPGETVFVPGGWWHVVLNLGQTVAVTQNFASPTNFHIVWHKTVRSRPKLSKYWLSQLRMYRPEIAKIADQVNI 1084
            M  ++++ I++ K  ARPELK    W R  Y +SF  S +   DNV R D   LS ++F+E+YE+  KPVVL   Q+ W A  KWTL++L +KYRNQKFK GED+DGYSVKMK KYY EY++   DDSPLYIFD SYGEH ++RKLL+DY  P FF DDLF+YA EKRRPPYRW V+GP RSGTGIHIDPLGTSAWNAL+ GHK W + PT TP+ +I V + EG +Q  E + WF  +YP+ + PTWP E+ PLEILQKPGETVFVPGGWWHVVLNL  T+A+TQNFAS TNF +VWHKTVR RPKLS+ W   L+   PE+A +AD V++
Sbjct:    1 MNHKSKKRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERADALQLSVEEFVERYERPYKPVVLLNAQEGWSAQEKWTLERLKRKYRNQKFKCGEDNDGYSVKMKMKYYIEYMESTRDDSPLYIFDSSYGEHPKRRKLLEDYKVPKFFTDDLFQYAGEKRRPPYRWFVMGPPRSGTGIHIDPLGTSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWPPEFKPLEILQKPGETVFVPGGWWHVVLNLDTTIAITQNFASSTNFPVVWHKTVRGRPKLSRKWYRILKQEHPELAVLADSVDL 332
The following BLAST results are available for this feature:
BLAST of TCONS_00073614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
JMJD62.024e-14960.84Bifunctional arginine demethylase and lysyl-hydrox... [more]
back to top