TCONS_00073550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073550
Unique NameTCONS_00073550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073550 ID=TCONS_00073550|Name=TCONS_00073550|organism=Clytia hemisphaerica|type=transcript|length=1776bp
GCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCTGTGCAC
CTGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAGGAATTG
TACCAATGGAATAGTCTAAGCGCGCTATCTTTGAACACGTTGGAAATGCA
GTTGAGCAAGAACTACACTGTCCGTTGTGGTAACTGGGAAGCGCAATCCC
TCTCGCGAAAACAGATCATGTATGCTGCAAAAGATGCCATCGTATCTTTA
GAAATCTTTTACGCTCTCGTTTTGCTACGTCGAGTTCGACGCCGTCAAGG
GCGTGACGTATTAGACGGGATGTTTGAATCTTCAGTCGATTTTCATAAAA
TGCTGCAAGGTTTTCAGGAGAGCTCCTCTTCATGTTTCTACTACTCTCAT
AGTAAAGACACTCTTAATGATGTGGATGCCATTTTGCCGACGGATACACT
GAGAACGTCACCTTCTCAAAGTTTAACAGAACTTTCTCACTCCTTATGTC
AAGGGATAGTAGACATCAAACATAAACCGAAACTGGTGATGAATCACAAT
GTGCAGAAGACAGCATCCAGAGCTTACTCCACAACTAAACAAACAACAAC
TCAACTAGACAAAACATCTAAACGTTATAACCATCAATGTAGAGATAAAC
CATTGTATGAAAACTGCTTTCTGATTGGTCCAGATAAACAAGTACTGGCA
ACTGTCAATCGTACAAAAGCAGAATGGTATTTACACAAAAATATTGgAGT
CGTTGAAAAGGATGAACCATTCACTGTCCGGTTATTATTCGAGCCTTCCG
GAAAACCAAAACCGGACGCTGACTACTACACAACAGTCAAAGAAAACGTA
TGTACCGTGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACATCATTCC
TCATGATTATCGGAAATATTTTCCACAGCAGATGAAAGACCACATGTCAC
ATGATGTCCTTTTGTTCTGTATAGATTGTCATCGTACTGCACAATACTTT
GACGACCAAGTACGACAAGACCTTGCCACCAAGTATAAAGCTCCCCTCGG
TACCAAACAAAATATGTTTAAAACGGACAACCCTCAGCTCGGGCGTGTGC
GATCAGCCGCCAAAGCGCTATTAAAGAATTCTGCTAACATTCCAACAGCT
AGACGTGAAGAACTAGAAGCcataattttaaaccacttCAAGGTGAATTC
GGTTAATACACAATTACTTAAAGACACTATGGATATGGATATACGCGTTG
AGAACAACAAATTCTTAGGATTACATGGCGAGAGGGTCGTAAAAGGGCTG
TTAGAAGAGAATGATTTAATAGAATTCATTAAGATGTGGAGACAACGTTT
CTTGGATACAATGAAACCCAAATTTCTACCACCGCTTTGGTCTGTTGATC
ACAATCTACAGAAATTCAACGCCTCAAATTGAACTATCCTGATTCTATAT
TCACTATTGAACTTTTAATTGATAGCTTTCCATTTCATTGAATTTCAtcg
gatttttcataaaatGTTCAGTCATATTTTCCATAGGAGCCTATGAAGCA
TTTCCCGTCCTCTAAACTTTGTCTCGctaatgttttgttcttttcaaaga
aataaagcGGCCCCCAATACCTTGTActttaaaagtcttttttttctgAA
TTGAAATTCTTGGATCATCACTTTTGACGCTGTGTCCTGCcgtattttgt
tgttgatttttacaTTGATTTTCTAGGTATAACTAATAGATTTATatttt
tagaaacaaaatttCTTAGATATTTT
Run BLAST on NCBI

protein sequence of TCONS_00073550-protein

>TCONS_00073550-protein ID=TCONS_00073550-protein|Name=TCONS_00073550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
QVKGFVDLRNLAHRCAPGVSGGKPDFDNPEEELYQWNSLSALSLNTLEMQ
LSKNYTVRCGNWEAQSLSRKQIMYAAKDAIVSLEIFYALVLLRRVRRRQG
RDVLDGMFESSVDFHKMLQGFQESSSSCFYYSHSKDTLNDVDAILPTDTL
RTSPSQSLTELSHSLCQGIVDIKHKPKLVMNHNVQKTASRAYSTTKQTTT
QLDKTSKRYNHQCRDKPLYENCFLIGPDKQVLATVNRTKAEWYLHKNIGV
VEKDEPFTVRLLFEPSGKPKPDADYYTTVKENVCTVCGSTENFVKKNIIP
HDYRKYFPQQMKDHMSHDVLLFCIDCHRTAQYFDDQVRQDLATKYKAPLG
TKQNMFKTDNPQLGRVRSAAKALLKNSANIPTARREELEAIILNHFKVNS
VNTQLLKDTMDMDIRVENNKFLGLHGERVVKGLLEENDLIEFIKMWRQRF
LDTMKPKFLPPLWSVDHNLQKFNASN
Run BLAST on NCBI

transcript from alignment at scaffold_94:455851..460207-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073550 ID=TCONS_00073550|Name=TCONS_00073550|organism=Clytia hemisphaerica|type=transcript|length=4357bp|location=Sequence derived from alignment at scaffold_94:455851..460207- (Clytia hemisphaerica)
GCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCTGTGCAC
CTGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAGGAATTG
TAAGTATTACCTGTTGGTGCAGGTTGGTGTCGAATAGAGAAGTCTTTGAA
AACGGGAAATAGAGAGCTAGTCTAGTACTCAGTTGTCCTAAGTACTGATC
ACTACTAGGTAAAAAACATCCATGTTCAATGTTTTTCATTGACTGTCAAT
TGCAAATTATTGACAAAAAATTCTTTATATTGACTTTCAATTGGTTTTTT
GAAAAGTCAAAGAATAATATTGACCGTTGATATTGATTTTAAACTTCTCA
CGTAATCGTGTTTTGAGCTAGCATCGCCTGTACATCATTCGTACATGTCA
AGGTTTTTACGTGTGTTAAAAACAATGCTTATTGTGTATGTTTTGCCTCA
CCACTGTCTTATAAAATCATATTTTGTTGCAAGNACATGTCAAGGTTTTT
ACGTGTGTTAAAAACAATGCTTATTGTGTATGTTTTGCCTCACCACTGTC
TTATAAAATCATATTTTGTTGCAAGGAGGTGTTTCAATTTCTGATTCAAT
TCAAGCTTAAGAACAGTACTTCCTATAATTTGTGATAATATAAATCTTTC
AAATTTTGTTACTTTAGGTACCAATGGAATAGTCTAAGCGCGCTATCTTT
GAACACGTTGGAAATGCAGTTGAGCAAGAACTACACTGTCCGTTGTGGTA
ACTGGGAAGCGCAATCCCTCTCGCGAAAACAGATCATGTATGCTGCAAAA
GATGCCATCGTATCTTTAGAAATCTTTTACGCTCTCGTTTTGCTACGTCG
AGTTCGACGCCGTCAAGGGCGTGACGTATTAGACGGGATGTTTGAATCTT
CAGTCGATTTTCATAAAATGCTGCAAGGTTTTCAGGAGAGCTCCTCTTCA
TGTTTCTACTACTCTCATAGTAAAGACACTCTTAATGATGTGGATGCCAT
TTTGCCGACGGATACACTGAGAACGTCACCTTCTCAAAGTTTAACAGAAC
TTTCTCACTCCTTATGTCAAGGGATAGTAGACATCAAACATAAACCGAAA
CTGGTGATGAATCACAATGTGCAGAAGACAGCATCCAGAGCTTACTCCAC
AACTAAACAAACAACAACTCAACTAGACAAAACATCTAAACGTTATAACC
ATCAATGTAGAGATAAACCATTGTATGAAAACTGCTTTCTGATTGGTCCA
GATAAACAAGTACTGGCAACTGTCAATCGTACAAAAGCAGAATGGTATTT
ACACAAAAATATTGGTATGGAAGTTTTGTAGTGTTGTCTAAGGTCGATTG
CATATCGTTTTTCACTTTTAGATACAACCATATGTATGACTGAATATTAG
TAAGGGGCTTTCTTAGAACTTGTAACATAATTTCCGGAGTAAAAGTTTTT
GACTGTGTAAAAAAAACTTAGAGACTTTTCTGAAAAGGCTTACGTGAATG
TTTTTGTGCTAAAACTGTCAGGTCAGGAAAGCACGTGTAAAAATGAACAT
TTTTTGGTACCATTGGAGTATTAAATTTCGAGGAAAAACATACTACAAGC
AAAATATCCCTGACTCGATTATATTTTTTAAGGTCGAAGTCCTGTCAGTT
TCATTACAACTGACGTCAGATTCCATACACTTGATATAACAGAATTTCTA
ACTTTTGTTATGTTTTCTTGGGATATGTAGTATGTACACTATTCCGCTCA
GAATTTCATGCTTTATCTGAATGAATTTTATCATTCACTTAATTCATTCG
TCCAGGAGTCATCCACATAGTACGTGCGCAAAAACTCTCCAGATTTTTGC
CACCCCTCCCCCTTGTACACAGGGAACAATTTAGAAATGCCGTCATTCAA
ACAATAGACGTACGCTTTTGCTAAACCCCCTCTCCCCTCTTCGCTGCGTA
CATACTATAGTGATGGCCCCAAGGCATAATTCATGTACCACCTGTCGTGT
ACCCTATGTCCTAAGGAATGTTCCCTTACTTATAGTGTGTACGACATTTT
TGATAAAAGTCACGCAGTTTCTTTTTGAAAAGTTTATTTTTAGGTTTCTT
ACCAAGCAAGAGATATCATTTAATCGGATTTAAATTTCGCGGTATTTAAA
TTTTCGGNACGACATTTTTGATAAAAGTCAGGTAGTTTCTTTTTGAAAAG
TTTATTTTTAGGTTTCTTACCAAGCAAGAGATATCATTTAATCGGATTTA
AATTTCGCGGTATTTAAATTTTCGGGATTTATTTAGCGGGTCAGCATTTT
CAAATATTTTGCGTGGATTTAACTTCGGAAAGCGGCGAATAAAATTCAGT
TGAGAATGACACTGAAAAACGCCAATTTGTTAAAAATCTCCCGAATCAAC
TTCCTCACGGGATTCTGTGCATTTTTTCCGCGAAAAAAGGGAAAAATTTG
CGAAAACGTGAAATTAAATCTCACAAAAATTAATCCTAATCTTCAGTTTT
CTGAATAGATTGATGAATTTATTTTTTATTAATTTTCAGGAGTCGTTGAA
AAGGATGAACCATTCACTGTCCGGTTATTATTCGAGCCTTCCGGAAAACC
AAAACCGGACGCTGACTACTACACAACAGTCAAAGAAAACGTATGTACCG
TGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACATCATTCCTCATGAT
TATCGGAAATATTTTCCACAGCAGATGAAAGACCACATGTCACATGATGT
CCTTTTGTTCTGTATAGATTGTCATCGGTGAGATTGCTTTTTTTTCTTCT
GATAGAAAGGGTTTCATATGACGGTTATGATATGATGATACTATTGAGAT
GATAATCTGATAGATTTCCCACTTTAATGCTCATAATGATCTGTATTGCC
TTTTCTGAAATTCAGTTGTAATCTAAAATCAAGTCATACACCATGTTCAC
ACGTTAATGTTCCGTTTCGCTCCGGTATGATTTTCGTTACGGATCGAGTG
TGTTTATATTGGTTTTGGTACGTGTTCGGAGCAAGAAAACGGAGTGCAGT
TCCGTTCTGAAGGCCGGTGTCCACTTTCGCGCGAAACTTTTCACGTTATT
TGTAACGTCATTGGTTGATTGAAAAAAGAAGCAATTCCATTGTTCAAAAT
TGACGTAACGGTTGAAAAAAGTTTAACTCCCTTCAACTTTTTTTTTGTTC
GCGCGAAACTTTTTTATGACGTAATCCTTTCTTCAGGCAAAAACGGTTAA
GAAAAAATCTTTCGCGCGCTTCACACGAAAGTGGACACCGGCCTTGATGA
AAAAAGTGGAGCGAAACCGTTTCGATCTGTTTTGCTTTGTAATGTCTTCT
TTTTTGACGTTTCCAATTTTGACGTTCACACTTGTTTCGGAACCGTTTCG
TCTGAACATAGGCATAATCTATTTCCTGCTCTTTGCCACTAGTGGGACTA
GAATATATCTTGTCAGCATAAACTTCTCTTTATTAGGAAGAAGAATATGG
GTTGACGTATTTTAGTTTTATATCCACCTAGTTACTCAAATGCGTACGAT
TATTTACTTTTTCAGTACTGCACAATACTTTGACGACCAAGTACGACAAG
ACCTTGCCACCAAGTATAAAGCTCCCCTCGGTACCAAACAAAATATGTTT
AAAACGGACAACCCTCAGCTCGGGCGTGTGCGATCAGCCGCCAAAGCGCT
ATTAAAGAATTCTGCTAACATTCCAACAGCTAGACGTGAAGAACTAGAAG
CCATAATTTTAAACCACTTCAAGGTGAATTCGGTTAATACACAATTACTT
AAAGACACTATGGATATGGATATACGCGTTGAGAACAACAAATTCTTAGG
ATTACATGGCGAGAGGGTCGTAAAAGGGCTGTTAGAAGAGAATGATTTAA
TAGAATTCATTAAGATGTGGAGACAACGTTTCTTGGATACAATGAAACCC
AAATTTCTACCACCGCTTTGGTCTGTTGATCACAATCTACAGAAATTCAA
CGCCTCAAATTGAACTATCCTGATTCTATATTCACTATTGAACTTTTAAT
TGATAGCTTTCCATTTCATTGAATTTCATCGGATTTTTCATAAAATGTTC
AGTCATATTTTCCATAGGAGCCTATGAAGCATTTCCCGTCCTCTAAACTT
TGTCTCGCTAATGTTTTGTTCTTTTCAAAGAAATAAAGCGGCCCCCAATA
CCTTGTACTTTAAAAGTCTTTTTTTTCTGAATTGAAATTCTTGGATCATC
ACTTTTGACGCTGTGTCCTGCCGTATTTTGTTGTTGATTTTTACATTGAT
TTTCTAGGTATAACTAATAGATTTATATTTTTAGAAACAAAATTTCTTAG
ATATTTT

Coding sequence (CDS) from alignment at scaffold_94:455851..460207-

>TCONS_00073550 ID=TCONS_00073550|Name=TCONS_00073550|organism=Clytia hemisphaerica|type=CDS|length=5724bp|location=Sequence derived from alignment at scaffold_94:455851..460207- (Clytia hemisphaerica)
TACTGCACAATACTTTGACGACCAAGTACGACAAGACCTTGCCACCAAGT
ATAAAGCTCCCCTCGGTACCAAACAAAATATGTTTAAAACGGACAACCCT
CAGCTCGGGCGTGTGCGATCAGCCGCCAAAGCGCTATTAAAGAATTCTGC
TAACATTCCAACAGCTAGACGTGAAGAACTAGAAGCCATAATTTTAAACC
ACTTCAAGGTGAATTCGGTTAATACACAATTACTTAAAGACACTATGGAT
ATGGATATACGCGTTGAGAACAACAAATTCTTAGGATTACATGGCGAGAG
GGTCGTAAAAGGGCTGTTAGAAGAGAATGATTTAATAGAATTCATTAAGA
TGTGGAGACAACGTTTCTTGGATACAATGAAACCCAAATTTCTACCACCG
CTTTGGTCTGTTGATCACAATCTACAGAAATTCAACGCCTCAAATTGAGA
GTCGTTGAAAAGGATGAACCATTCACTGTCCGGTTATTATTCGAGCCTTC
CGGAAAACCAAAACCGGACGCTGACTACTACACAACAGTCAAAGAAAACG
TATGTACCGTGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACATCATT
CCTCATGATTATCGGAAATATTTTCCACAGCAGATGAAAGACCACATGTC
ACATGATGTCCTTTTGTTCTGTATAGATTGTCATCGGTACCAATGGAATA
GTCTAAGCGCGCTATCTTTGAACACGTTGGAAATGCAGTTGAGCAAGAAC
TACACTGTCCGTTGTGGTAACTGGGAAGCGCAATCCCTCTCGCGAAAACA
GATCATGTATGCTGCAAAAGATGCCATCGTATCTTTAGAAATCTTTTACG
CTCTCGTTTTGCTACGTCGAGTTCGACGCCGTCAAGGGCGTGACGTATTA
GACGGGATGTTTGAATCTTCAGTCGATTTTCATAAAATGCTGCAAGGTTT
TCAGGAGAGCTCCTCTTCATGTTTCTACTACTCTCATAGTAAAGACACTC
TTAATGATGTGGATGCCATTTTGCCGACGGATACACTGAGAACGTCACCT
TCTCAAAGTTTAACAGAACTTTCTCACTCCTTATGTCAAGGGATAGTAGA
CATCAAACATAAACCGAAACTGGTGATGAATCACAATGTGCAGAAGACAG
CATCCAGAGCTTACTCCACAACTAAACAAACAACAACTCAACTAGACAAA
ACATCTAAACGTTATAACCATCAATGTAGAGATAAACCATTGTATGAAAA
CTGCTTTCTGATTGGTCCAGATAAACAAGTACTGGCAACTGTCAATCGTA
CAAAAGCAGAATGGTATTTACACAAAAATATTGCAAGTGAAAGGATTTGT
TGACTTGCGGAACTTGGCTCACCGCTGTGCACCTGGTGTCAGTGGTGGAA
AACCTGACTTTGACAACCCTGAGGAGGAATTTACTGCACAATACTTTGAC
GACCAAGTACGACAAGACCTTGCCACCAAGTATAAAGCTCCCCTCGGTAC
CAAACAAAATATGTTTAAAACGGACAACCCTCAGCTCGGGCGTGTGCGAT
CAGCCGCCAAAGCGCTATTAAAGAATTCTGCTAACATTCCAACAGCTAGA
CGTGAAGAACTAGAAGCCATAATTTTAAACCACTTCAAGGTGAATTCGGT
TAATACACAATTACTTAAAGACACTATGGATATGGATATACGCGTTGAGA
ACAACAAATTCTTAGGATTACATGGCGAGAGGGTCGTAAAAGGGCTGTTA
GAAGAGAATGATTTAATAGAATTCATTAAGATGTGGAGACAACGTTTCTT
GGATACAATGAAACCCAAATTTCTACCACCGCTTTGGTCTGTTGATCACA
ATCTACAGAAATTCAACGCCTCAAATTGAGAGTCGTTGAAAAGGATGAAC
CATTCACTGTCCGGTTATTATTCGAGCCTTCCGGAAAACCAAAACCGGAC
GCTGACTACTACACAACAGTCAAAGAAAACGTATGTACCGTGTGTGGTAG
TACCGAGAATTTCGTCAAGAAGAACATCATTCCTCATGATTATCGGAAAT
ATTTTCCACAGCAGATGAAAGACCACATGTCACATGATGTCCTTTTGTTC
TGTATAGATTGTCATCGGTACCAATGGAATAGTCTAAGCGCGCTATCTTT
GAACACGTTGGAAATGCAGTTGAGCAAGAACTACACTGTCCGTTGTGGTA
ACTGGGAAGCGCAATCCCTCTCGCGAAAACAGATCATGTATGCTGCAAAA
GATGCCATCGTATCTTTAGAAATCTTTTACGCTCTCGTTTTGCTACGTCG
AGTTCGACGCCGTCAAGGGCGTGACGTATTAGACGGGATGTTTGAATCTT
CAGTCGATTTTCATAAAATGCTGCAAGGTTTTCAGGAGAGCTCCTCTTCA
TGTTTCTACTACTCTCATAGTAAAGACACTCTTAATGATGTGGATGCCAT
TTTGCCGACGGATACACTGAGAACGTCACCTTCTCAAAGTTTAACAGAAC
TTTCTCACTCCTTATGTCAAGGGATAGTAGACATCAAACATAAACCGAAA
CTGGTGATGAATCACAATGTGCAGAAGACAGCATCCAGAGCTTACTCCAC
AACTAAACAAACAACAACTCAACTAGACAAAACATCTAAACGTTATAACC
ATCAATGTAGAGATAAACCATTGTATGAAAACTGCTTTCTGATTGGTCCA
GATAAACAAGTACTGGCAACTGTCAATCGTACAAAAGCAGAATGGTATTT
ACACAAAAATATTGCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCT
CACCGCTGTGCACCTGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCC
TGAGGAGGAATTTACTGCACAATACTTTGACGACCAAGTACGACAAGACC
TTGCCACCAAGTATAAAGCTCCCCTCGGTACCAAACAAAATATGTTTAAA
ACGGACAACCCTCAGCTCGGGCGTGTGCGATCAGCCGCCAAAGCGCTATT
AAAGAATTCTGCTAACATTCCAACAGCTAGACGTGAAGAACTAGAAGCCA
TAATTTTAAACCACTTCAAGGTGAATTCGGTTAATACACAATTACTTAAA
GACACTATGGATATGGATATACGCGTTGAGAACAACAAATTCTTAGGATT
ACATGGCGAGAGGGTCGTAAAAGGGCTGTTAGAAGAGAATGATTTAATAG
AATTCATTAAGATGTGGAGACAACGTTTCTTGGATACAATGAAACCCAAA
TTTCTACCACCGCTTTGGTCTGTTGATCACAATCTACAGAAATTCAACGC
CTCAAATTGAGAGTCGTTGAAAAGGATGAACCATTCACTGTCCGGTTATT
ATTCGAGCCTTCCGGAAAACCAAAACCGGACGCTGACTACTACACAACAG
TCAAAGAAAACGTATGTACCGTGTGTGGTAGTACCGAGAATTTCGTCAAG
AAGAACATCATTCCTCATGATTATCGGAAATATTTTCCACAGCAGATGAA
AGACCACATGTCACATGATGTCCTTTTGTTCTGTATAGATTGTCATCGGT
ACCAATGGAATAGTCTAAGCGCGCTATCTTTGAACACGTTGGAAATGCAG
TTGAGCAAGAACTACACTGTCCGTTGTGGTAACTGGGAAGCGCAATCCCT
CTCGCGAAAACAGATCATGTATGCTGCAAAAGATGCCATCGTATCTTTAG
AAATCTTTTACGCTCTCGTTTTGCTACGTCGAGTTCGACGCCGTCAAGGG
CGTGACGTATTAGACGGGATGTTTGAATCTTCAGTCGATTTTCATAAAAT
GCTGCAAGGTTTTCAGGAGAGCTCCTCTTCATGTTTCTACTACTCTCATA
GTAAAGACACTCTTAATGATGTGGATGCCATTTTGCCGACGGATACACTG
AGAACGTCACCTTCTCAAAGTTTAACAGAACTTTCTCACTCCTTATGTCA
AGGGATAGTAGACATCAAACATAAACCGAAACTGGTGATGAATCACAATG
TGCAGAAGACAGCATCCAGAGCTTACTCCACAACTAAACAAACAACAACT
CAACTAGACAAAACATCTAAACGTTATAACCATCAATGTAGAGATAAACC
ATTGTATGAAAACTGCTTTCTGATTGGTCCAGATAAACAAGTACTGGCAA
CTGTCAATCGTACAAAAGCAGAATGGTATTTACACAAAAATATTGCAAGT
GAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCTGTGCACCTGGTG
TCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAGGAATTTACTGCA
CAATACTTTGACGACCAAGTACGACAAGACCTTGCCACCAAGTATAAAGC
TCCCCTCGGTACCAAACAAAATATGTTTAAAACGGACAACCCTCAGCTCG
GGCGTGTGCGATCAGCCGCCAAAGCGCTATTAAAGAATTCTGCTAACATT
CCAACAGCTAGACGTGAAGAACTAGAAGCCATAATTTTAAACCACTTCAA
GGTGAATTCGGTTAATACACAATTACTTAAAGACACTATGGATATGGATA
TACGCGTTGAGAACAACAAATTCTTAGGATTACATGGCGAGAGGGTCGTA
AAAGGGCTGTTAGAAGAGAATGATTTAATAGAATTCATTAAGATGTGGAG
ACAACGTTTCTTGGATACAATGAAACCCAAATTTCTACCACCGCTTTGGT
CTGTTGATCACAATCTACAGAAATTCAACGCCTCAAATTGAGAGTCGTTG
AAAAGGATGAACCATTCACTGTCCGGTTATTATTCGAGCCTTCCGGAAAA
CCAAAACCGGACGCTGACTACTACACAACAGTCAAAGAAAACGTATGTAC
CGTGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACATCATTCCTCATG
ATTATCGGAAATATTTTCCACAGCAGATGAAAGACCACATGTCACATGAT
GTCCTTTTGTTCTGTATAGATTGTCATCGGTACCAATGGAATAGTCTAAG
CGCGCTATCTTTGAACACGTTGGAAATGCAGTTGAGCAAGAACTACACTG
TCCGTTGTGGTAACTGGGAAGCGCAATCCCTCTCGCGAAAACAGATCATG
TATGCTGCAAAAGATGCCATCGTATCTTTAGAAATCTTTTACGCTCTCGT
TTTGCTACGTCGAGTTCGACGCCGTCAAGGGCGTGACGTATTAGACGGGA
TGTTTGAATCTTCAGTCGATTTTCATAAAATGCTGCAAGGTTTTCAGGAG
AGCTCCTCTTCATGTTTCTACTACTCTCATAGTAAAGACACTCTTAATGA
TGTGGATGCCATTTTGCCGACGGATACACTGAGAACGTCACCTTCTCAAA
GTTTAACAGAACTTTCTCACTCCTTATGTCAAGGGATAGTAGACATCAAA
CATAAACCGAAACTGGTGATGAATCACAATGTGCAGAAGACAGCATCCAG
AGCTTACTCCACAACTAAACAAACAACAACTCAACTAGACAAAACATCTA
AACGTTATAACCATCAATGTAGAGATAAACCATTGTATGAAAACTGCTTT
CTGATTGGTCCAGATAAACAAGTACTGGCAACTGTCAATCGTACAAAAGC
AGAATGGTATTTACACAAAAATATTGCAAGTGAAAGGATTTGTTGACTTG
CGGAACTTGGCTCACCGCTGTGCACCTGGTGTCAGTGGTGGAAAACCTGA
CTTTGACAACCCTGAGGAGGAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045653XLOC_045653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073550-exon-scaffold_94-1575043694:460109..460207TCONS_00073550-exon-scaffold_94-1575043694:460109..460207Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1575043694:458894..459540TCONS_00073550-exon-scaffold_94-1575043694:458894..459540Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1575043694:457431..457668TCONS_00073550-exon-scaffold_94-1575043694:457431..457668Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1575043694:455851..456642TCONS_00073550-exon-scaffold_94-1575043694:455851..456642Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1510915933:460109..460207TCONS_00073550-exon-scaffold_94-1510915933:460109..460207Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1510915933:458894..459540TCONS_00073550-exon-scaffold_94-1510915933:458894..459540Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1510915933:457431..457668TCONS_00073550-exon-scaffold_94-1510915933:457431..457668Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1510915933:455851..456642TCONS_00073550-exon-scaffold_94-1510915933:455851..456642Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1491911889:460109..460207TCONS_00073550-exon-scaffold_94-1491911889:460109..460207Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1491911889:458894..459540TCONS_00073550-exon-scaffold_94-1491911889:458894..459540Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1491911889:457431..457668TCONS_00073550-exon-scaffold_94-1491911889:457431..457668Clytia hemisphaericaexon
TCONS_00073550-exon-scaffold_94-1491911889:455851..456642TCONS_00073550-exon-scaffold_94-1491911889:455851..456642Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073550-proteinTCONS_00073550-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:455851..460207 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.96473	5.53351	1.32136	0.505583	7.36074	7.61442	6.46826	7.32831	7.73969	9.11112	9.66416	5.15573	7.11528	6.21697	6.92222	5.7147	6.90783	9.04724	2.1699	3.01645	4.12866	1.09409	9.23609	9.30672	5.0746	5.38688	1.35388	2.35339	5.78601	5.86441
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00073550 vs. Swiss-Prot (Human)
Match: EXD2 (Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 3.739e-78
Identity = 133/331 (40.18%), Postives = 202/331 (61.03%), Query Frame = 2 
Query:  497 CQGIVDIKHKPKLV--MNHNVQKTASRAYXXXXXXXXXXXXXXXRYNHQCRD-----------------KPLYENCFLIGPDKQVLATVNRTKAEWYLHKNIGVVEKDEPFTVRLLFEPSGKPKPDADYYTTVKENVCTVCGSTENFVKKNIIPHDYRKYFPQQMKDHMSHDVLLFCIDCHRTAQYFDDQVRQDLATKYKAPLGTKQNMFKTDNPQLGRVRSAAKALLKNSANIPTARREELEAIILNHFKVNSVNTQLLKDTMDMDIRVENNKFLGLHGERVVK-----GLLEENDLIEFIKMWRQRFLDTMKPKFLPPLWSVDHNLQKF 1417
            CQG+VDI  + K +  +   V   A+ +    +   +++D      NHQ RD                  PLY+NCFL  PD Q L T +R KA+WYL K IG +  +EPF V+L FEP+G+P+   DYY  VKEN+C VCG  +++++KN+IPH+YRK+FP +MKDH SHDVLL C  CH  + Y+D+ ++Q LA +++AP+G+++ +   ++P+  +VRS A+ALL N+ ++PT R+EEL   +   +  + V  ++L++   ++ R+ N  ++  HG +VV+     GL     L++    WRQ FLD+M+PK LP  WSVDHN QK 
Sbjct:  284 CQGVVDIPFRSKGMSRLGEEVNGEATESQQKPRNKKSKMDGMVP-GNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRKAQWYLDKGIGELVSEEPFVVKLRFEPAGRPESPGDYYLMVKENLCVVCGKRDSYIRKNVIPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDPERRQVRSGARALL-NAESLPTQRKEELLQALREFYNTDVVTEEMLQEAASLETRISNENYVP-HGLKVVQCHSQGGL---RSLMQLESRWRQHFLDSMQPKHLPQQWSVDHNHQKL 608
The following BLAST results are available for this feature:
BLAST of TCONS_00073550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXD23.739e-7840.18Exonuclease 3'-5' domain-containing protein 2 OS=H... [more]
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