TCONS_00073550-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073550-protein
Unique NameTCONS_00073550-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073550-protein ID=TCONS_00073550-protein|Name=TCONS_00073550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
QVKGFVDLRNLAHRCAPGVSGGKPDFDNPEEELYQWNSLSALSLNTLEMQ
LSKNYTVRCGNWEAQSLSRKQIMYAAKDAIVSLEIFYALVLLRRVRRRQG
RDVLDGMFESSVDFHKMLQGFQESSSSCFYYSHSKDTLNDVDAILPTDTL
RTSPSQSLTELSHSLCQGIVDIKHKPKLVMNHNVQKTASRAYSTTKQTTT
QLDKTSKRYNHQCRDKPLYENCFLIGPDKQVLATVNRTKAEWYLHKNIGV
VEKDEPFTVRLLFEPSGKPKPDADYYTTVKENVCTVCGSTENFVKKNIIP
HDYRKYFPQQMKDHMSHDVLLFCIDCHRTAQYFDDQVRQDLATKYKAPLG
TKQNMFKTDNPQLGRVRSAAKALLKNSANIPTARREELEAIILNHFKVNS
VNTQLLKDTMDMDIRVENNKFLGLHGERVVKGLLEENDLIEFIKMWRQRF
LDTMKPKFLPPLWSVDHNLQKFNASN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045653XLOC_045653Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073550TCONS_00073550Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 38..89
e-value: 3.3E-6
score: 26.8
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..90
e-value: 4.5E-11
score: 41.9
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 3..89

Blast
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BLAST of TCONS_00073550-protein vs. Swiss-Prot (Human)
Match: EXD2 (Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2)

HSP 1 Score: 272.707 bits (696), Expect = 9.636e-85
Identity = 167/495 (33.74%), Postives = 253/495 (51.11%), Query Frame = 0 
Query:    2 VKGFVDLRNLAHRCAPGVSGGKPDFDNPEEELYQWNSLSALSLNTLEMQLSKNYTVRCGNWEAQSLSRKQIMYAAKDAIVSLEIFYALVLLRRVRRRQGRDVLDGMFESSVDFHKMLQGFQESSSSCFYYSHSKDTLNDVDAILPTDTLRTSPSQSLTELSHSLCQGIVDIKHKPKLV--MNHNVQKTASRAYSTTKQTTTQLDKTSKRYNHQCRD-----------------KPLYENCFLIGPDKQVLATVNRTKAEWYLHKNIGVVEKDEPFTVRLLFEPSGKPKPDADYYTTVKENVCTVCGSTENFVKKNIIPHDYRKYFPQQMKDHMSHDVLLFCIDCHRTAQYFDDQVRQDLATKYKAPLGTKQNMFKTDNPQLGRVRSAAKALLKNSANIPTARREELEAIILNHFKVNSVNTQLLKDTMDMDIRVENNKFLGLHGERVVK-----GLLEENDLIEFIKMWRQRFLDTMKPKFLPPLWSVDHNLQKF 472
            V+G +DLR LA R    +             L    SL +L+   L   L K+  +RC NW+A++L+  Q             + YA            RD      + SV     L G+  S +S        D  +    +L                    CQG+VDI  + K +  +   V   A+ +    +   +++D      NHQ RD                  PLY+NCFL  PD Q L T +R KA+WYL K IG +  +EPF V+L FEP+G+P+   DYY  VKEN+C VCG  +++++KN+IPH+YRK+FP +MKDH SHDVLL C  CH  + Y+D+ ++Q LA +++AP+G+++ +   ++P+  +VRS A+ALL N+ ++PT R+EEL   +   +  + V  ++L++   ++ R+ N  ++  HG +VV+     GL     L++    WRQ FLD+M+PK LP  WSVDHN QK 
Sbjct:  183 VRGCLDLRYLAMRQRNNL-------------LCNGLSLKSLAETVLNFPLDKSLLLRCSNWDAETLTEDQ-------------VIYA-----------ARDA-----QISVALFLHLLGYPFSRNS---PGEKNDDHSSWRKVLEK------------------CQGVVDIPFRSKGMSRLGEEVNGEATESQQKPRNKKSKMDGMVP-GNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRKAQWYLDKGIGELVSEEPFVVKLRFEPAGRPESPGDYYLMVKENLCVVCGKRDSYIRKNVIPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDPERRQVRSGARALL-NAESLPTQRKEELLQALREFYNTDVVTEEMLQEAASLETRISNENYVP-HGLKVVQCHSQGGL---RSLMQLESRWRQHFLDSMQPKHLPQQWSVDHNHQKL 608
The following BLAST results are available for this feature:
BLAST of TCONS_00073550-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXD29.636e-8533.74Exonuclease 3'-5' domain-containing protein 2 OS=H... [more]
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