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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073520 ID=TCONS_00073520|Name=TCONS_00073520|organism=Clytia hemisphaerica|type=transcript|length=2342bp
gtttgtttacattcattcaattttacgtacatgttcTTCTTTCGTTTTGT
GCATTGTTGGTCGATAGTTGTGCTGGTTGTATATTTTAACCAGAGCTAAA
CATGACATTAATACATACTGTCAAGATTTTTCTAACTTGGGGAAGTACTT
GCTATCTTTTGTTGTGATTTAAAAGACTACGTACTACCAAAACTAATGTA
TATACAACATCCCAAACATCCCCGCGTAAATCAGATTTTGCCCGAAAAAT
CTTGTTTCTCCTGTCGTGTTGTTAAACTTCCACTGGATATAGACCTTTTC
GATAGTTCCATGACCATATTGAAAAGTATAGACAAAATAGCAACTATTGC
TAAAGGTGTATTTTACTTAGAGAAAGTAGACGTTTATATCTTTGTGAGAA
GCTGTCGTGCTGCTTCTTAAAGAGAAGGGAGATTTTATTCTGTTGATTTG
CTGGCTTACAGAATGTTTAGAAATAGTGATACTGCTCTACTTATGACTTT
TGTAAAATAACTGATTTGGGTTCTTTGCAAAATGTtgtaaacaaatcaaa
aacacaaaacatGACCCACATTGAAAGTTGAATAAAATGAGGACCAACAA
GTTCAATCatgcatcaaattttaaatacttaaaaagagaattttcaaaaa
tttgtctgggtcttgttttttttttatactcAACGTTGGTGTATtactaa
atgtaaacaaaacaggCGAACAAATCTTTAATTCACCAAATTGTGATGAG
AGACTTAACTTTCTTAAtcagatttgaaaatttgatattgttATGTCAGC
TTCTTTCTTTTCCCAAAATAATGAAAGCTATCTTTTTATTTTAGGCAATC
GATTATGAATTGTACAGCATTGTTTTTACATCCCCGGAAACAATTTTGGA
GAAGAATCGGAATATTCTGAAACAAAATCAATTCACCAAACGTATTGTCG
GTATTGCTGTTGATGAAAGTCACTGTGTTAAGAAATGagGAGAAGGTGAT
AAAGATTCTAATGCTTTTCGTAAATGGTACGGAAGATTGTCAGAAATTCG
ATCATTTTTATCAGCAGAAACACCCATGATAGCTATGACAGCCACAGCAA
CCTCAAGTGTACGTCAAGATATAATCGACAGTCTGGAGCTGTATCAACCC
TATATTTCTGTGGCTGTTCCATTTAAGCCAAATGTCAAGTATTTCCTACA
CTGCAATTCAACAAGAAATGTTGAACAGATTTTTTTGCCTTATGTCAAGG
ACATTCAGAACAATGGCTTTGAGGCTGAACGTGTAATTGTTTTTTGTCGG
ACGTCCCACCTTCTAAGGAAACTATTTGCTTTATTTGATGGCAAGTTCTC
GTCAAATTATCCTGACCTCCTGGTAAGACCATATGCACGCTACCATGCCC
ATACCGACGATGAAGTTAAAGCTATGATTAACGATTCGTTGGCACAGCCT
TATGGAAAAGTTCGCTTCTTGATGGCATCAATCGCTTTTGGTATGGGGGT
TGATTGTAAAGGACTTTACACCGTAATCCATTTTGGAGCCCCTAGTGATA
TTGATGATTATTTCCAAGAATCAGGAAGAGTTGGTCGGGATGGAGCCCAA
AGTCAAGCCATTTTGTTGACATCCCTCGCTGTCTAATATCACCCAATATA
TCAAAAGCCATGAAAGAATATtgtaaaaatacagaaaaatgcAGAAGACA
AATTTTGATGGGACAATACAGCACTGATTCGTTCAATATCACACCACTCC
ACCTCTGTTGTGATGTATGTGAAAAAAACTGTGAATGTGGCCAAAAAGAC
TGCCAGTCTTACAGATTGACCACCTTTGAAGTAAATGAAGAGACTCTCCT
GGTACCCAAAGAATGTTCTTTGAATTCTGATGGCATTCAGATTACAAATG
AACTATCTAAATTGAGAAAGTCGTTACTAGTTGTCAGCAATGTCATTTCA
CCAAGTATTTCCTCAGGATTCCCTCTTGAAGCTGTTGATGAAATTGTGAG
TATAGCTTCAAAAACTGTCACTGAGGAGGATCTATACACAAAGACTACAC
TAATGAATCAAGAAATGATTCCTAgagttttggaaattttgacacGAGCT
GTGAACtctttgaaatgaaaaactACGACGATGAATACTATTTTTCAAGT
GATGATAATGAATCAGATTCTGAAAACGAAAATAGACGCTATCGATTCGG
CAATAGTTCTCTTACTGAGAGTGACAGTgattaaaatacttttttatccC
AATTGACTATAGCATTATActgctttattttcttttttatttgaatattt
tttatttctgatttcTGATTGGTCACTAATACTTATCCATGT Run BLAST on NCBI protein sequence of TCONS_00073520-protein >TCONS_00073520-protein ID=TCONS_00073520-protein|Name=TCONS_00073520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MIAMTATATSSVRQDIIDSLELYQPYISVAVPFKPNVKYFLHCNSTRNVE
QIFLPYVKDIQNNGFEAERVIVFCRTSHLLRKLFALFDGKFSSNYPDLLV
RPYARYHAHTDDEVKAMINDSLAQPYGKVRFLMASIAFGMGVDCKGLYTV
IHFGAPSDIDDYFQESGRVGRDGAQSQAILLTSLAV Run BLAST on NCBI transcript from alignment at scaffold_94:11756..14718+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073520 ID=TCONS_00073520|Name=TCONS_00073520|organism=Clytia hemisphaerica|type=transcript|length=2963bp|location=Sequence derived from alignment at scaffold_94:11756..14718+ (Clytia hemisphaerica)
gtttgtttacattcattcaattttacgtacatgttcTTCTTTCGTTTTGT
GCATTGTTGGTCGATAGTTGTGCTGGTTGTATATTTTAACCAGAGCTAAA
CATGACATTAATACATACTGTCAAGATTTTTCTAACTTGGGGAAGTACTT
GCTATCTTTTGTTGTGATTTAAAAGACTACGTACTACCAAAACTAATGTA
TATACAACATCCCAAACATCCCCGCGTAAATCAGATTTTGCCCGAAAAAT
CTTGTTTCTCCTGTCGTGTTGTTAAACTTCCACTGGATATAGACCTTTTC
GATAGTTCCATGACCATATTGAAAAGTATAGACAAAATAGCAACTATTGC
TAAAGGTGTATTTTACTTAGAGAAAGTAGACGTTTATATCTTTGTGAGAA
GCTGTCGTGCTGCTTCTTAAAGAGAAGGGAGATTTTATTCTGTTGATTTG
CTGGCTTACAGAATGTTTAGAAATAGTGATACTGCTCTACTTATGACTTT
TGTAAAATAACTGATTTGGGTTCTTTGCAAAATGTtgtaaacaaatcaaa
aacacaaaacatGACCCACATTGAAAGTTGAATAAAATGAGGACCAACAA
GTTCAATCatgcatcaaattttaaatacttaaaaagagaattttcaaaaa
tttgtctgggtcttgttttttttttatactcAACGTTGGTGTATtactaa
atgtaaacaaaacaggCGAACAAATCTTTAATTCACCAAATTGTGATGAG
AGACTTAACTTTCTTAAtcagatttgaaaatttgatattgttATGTCAGC
TTCTTTCTTTTCCCAAAATAATGAAAGCTATCTTTTTATTTTAGGCAATC
GATTATGAATTGTACAGCATTGTTTTTACATCCCCGGAAACAATTTTGGA
GAAGAATCGGAATATTCTGAAACAAAATCAATTCACCAAACGTATTGTCG
GTATTGCTGTTGATGAAAGTCACTGTGTTAAGAAATGGTATGATGATTGG
TACTATTTCAgactgttttttattttgatgactTTACCCTATTGTGAAAG
TCGTAAAAATGTAAGATTTGCATTATCTTTAAGGTGATTATTCACAACTT
TTTAAAGGATAGGAAGGAACTTGTGTAGTTAATTTTACTACAATAGGTGT
ATattgaaaatagtatttttctTGGTATATAGCTTTGACTAACATGatag
actttttttcaaaaaggacgtcctattgaataattatgtagtccagccat
aaaaacaatgatagagccatgcataattaatgtatcatgcatattgtaat
aattatatgcatggttttatcattgtttttctgctggacgacataattat
tcaacagggtggcctctttgaaaaaaggtctattgaccaagcaaagaaaa
agaaatcatcTTTACATCATATCCTTAAATCTATTGGAAAGCTTTGAATA
CCTTTGTTTAAAACAATACGAAAGataatcagcaaaatttcaccACCCAG
AAAATTGACAACAAATTTTAAAAACGTTTATTTTCAGAAGAACACTATTG
AATGATGAATAAATACCaaagattttttctaaattctattaatttctatt
tttttcagagGAGAAGGTGATAAAGATTCTAATGCTTTTCGTAAATGGTA
CGGAAGATTGTCAGAAATTCGATCATTTTTATCAGCAGAAACACCCATGA
TAGCTATGACAGCCACAGCAACCTCAAGTGTACGTCAAGATATAATCGAC
AGTCTGGAGCTGTATCAACCCTATATTTCTGTGGCTGTTCCATTTAAGCC
AAATGTCAAGTATTTCCTACACTGCAATTCAACAAGAAATGTTGAACAGA
TTTTTTTGCCTTATGTCAAGGACATTCAGAACAATGGCTTTGAGGCTGAA
CGTGTAATTGTTTTTTGTCGGACGTCCCACCTTCTAAGGAAACTATTTGC
TTTATTTGATGGCAAGTTCTCGTCAAATTATCCTGACCTCCTGGTAAGAC
CATATGCACGCTACCATGCCCATACCGACGATGAAGTTAAAGCTATGATT
AACGATTCGTTGGCACAGCCTTATGGAAAAGTTCGCTTCTTGATGGCATC
AATCGCTTTTGGTATGGGGGTTGATTGTAAAGGACTTTACACCGTAATCC
ATTTTGGAGCCCCTAGTGATATTGATGATTATTTCCAAGAATCAGGAAGA
GTTGGTCGGGATGGAGCCCAAAGTCAAGCCATTTTGTTGACATCCCTCGC
TGTCTAATATCACCCAATATATCAAAAGCCATGAAAGAATATtgtaaaaa
tacagaaaaatgcAGAAGACAAATTTTGATGGGACAATACAGCACTGATT
CGTTCAATATCACACCACTCCACCTCTGTTGTGATGTATGTGAAAAAAAC
TGTGAATGTGGCCAAAAAGACTGCCAGTCTTACAGATTGACCACCTTTGA
AGTAAATGAAGAGACTCTCCTGGTACCCAAAGAATGTTCTTTGAATTCTG
ATGGCATTCAGATTACAAATGAACTATCTAAATTGAGAAAGTCGTTACTA
GTTGTCAGCAATGTCATTTCACCAAGTATTTCCTCAGGATTCCCTCTTGA
AGCTGTTGATGAAATTGTGAGTATAGCTTCAAAAACTGTCACTGAGGAGG
ATCTATACACAAAGACTACACTAATGAATCAAGAAATGATTCCTAgagtt
ttggaaattttgacacGAGCTGTGAACtctttgaaatgaaaaactACGAC
GATGAATACTATTTTTCAAGTGATGATAATGAATCAGATTCTGAAAACGA
AAATAGACGCTATCGATTCGGCAATAGTTCTCTTACTGAGAGTGACAGTg
attaaaatacttttttatccCAATTGACTATAGCATTATActgctttatt
ttcttttttatttgaatattttttatttctgatttcTGATTGGTCACTAA
TACTTATCCATGT Coding sequence (CDS) from alignment at scaffold_94:11756..14718+ >TCONS_00073520 ID=TCONS_00073520|Name=TCONS_00073520|organism=Clytia hemisphaerica|type=CDS|length=561bp|location=Sequence derived from alignment at scaffold_94:11756..14718+ (Clytia hemisphaerica)
ATGATAGCTATGACAGCCACAGCAACCTCAAGTGTACGTCAAGATATAAT
CGACAGTCTGGAGCTGTATCAACCCTATATTTCTGTGGCTGTTCCATTTA
AGCCAAATGTCAAGTATTTCCTACACTGCAATTCAACAAGAAATGTTGAA
CAGATTTTTTTGCCTTATGTCAAGGACATTCAGAACAATGGCTTTGAGGC
TGAACGTGTAATTGTTTTTTGTCGGACGTCCCACCTTCTAAGGAAACTAT
TTGCTTTATTTGATGGCAAGTTCTCGTCAAATTATCCTGACCTCCTGGTA
AGACCATATGCACGCTACCATGCCCATACCGACGATGAAGTTAAAGCTAT
GATTAACGATTCGTTGGCACAGCCTTATGGAAAAGTTCGCTTCTTGATGG
CATCAATCGCTTTTGGTATGGGGGTTGATTGTAAAGGACTTTACACCGTA
ATCCATTTTGGAGCCCCTAGTGATATTGATGATTATTTCCAAGAATCAGG
AAGAGTTGGTCGGGATGGAGCCCAAAGTCAAGCCATTTTGTTGACATCCC
TCGCTGTCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073520-exon-scaffold_94-1491911889:11756..12742 | TCONS_00073520-exon-scaffold_94-1491911889:11756..12742 | Clytia hemisphaerica | exon |
| TCONS_00073520-exon-scaffold_94-1510915933:11756..12742 | TCONS_00073520-exon-scaffold_94-1510915933:11756..12742 | Clytia hemisphaerica | exon |
| TCONS_00073520-exon-scaffold_94-1575043694:11756..12742 | TCONS_00073520-exon-scaffold_94-1575043694:11756..12742 | Clytia hemisphaerica | exon |
| TCONS_00073520-exon-scaffold_94-1491911889:13364..14718 | TCONS_00073520-exon-scaffold_94-1491911889:13364..14718 | Clytia hemisphaerica | exon |
| TCONS_00073520-exon-scaffold_94-1510915933:13364..14718 | TCONS_00073520-exon-scaffold_94-1510915933:13364..14718 | Clytia hemisphaerica | exon |
| TCONS_00073520-exon-scaffold_94-1575043694:13364..14718 | TCONS_00073520-exon-scaffold_94-1575043694:13364..14718 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:11756..14718 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073520 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 6.598e-27 Identity = 87/257 (33.85%), Postives = 135/257 (52.53%), Query Frame = 2
Query: 863 YSIVFTSPETILEKNRNILKQNQFTKRIVGIAVDESHCVKK*GEGDKDSNAFRKWYGRLSEIRSFLSAETPMIAMTATATSSVRQDIIDSLELYQPYISVAVPFKPNVKYFLHCNSTRNVEQIFLPY-VKDIQNNGFEAERVIVFCRTSHLLRKLFALFDGKFSSNYPDLLVRPYARYHAHTDDEVKAMINDSLAQPYGKVRFLMASIAFGMGVDCKGLYTVIHFGAPSDIDDYFQESGRVGRDGAQSQAILLTSLA 1630
Y IV+ +PE N +L+Q + I IAVDE+HC+ + G +DS FRK L +++ L P++A+TATA+SS+R+DI+ L L P I+ +PN+ Y T N+ Q P+ VK + FE I++C + RK+ G+ L YHA + I+ + +++ ++A+IAFGMG++ + VIH+GAP D++ Y+QE GR GRDG QS +L + A
Sbjct: 636 YRIVYVTPE-YCSGNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDS--FRK----LGSLKTALPM-VPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNL-YLEVRRKTGNILQDLQPFLVKTSSHWEFEGP-TIIYCPS----RKMTQQVTGELRK-----LNLSCGTYHAGMSFSTRKDIHHRFVR--DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPA 871
The following BLAST results are available for this feature:
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