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TCONS_00073501 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073501
Unique NameTCONS_00073501
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073501 ID=TCONS_00073501|Name=TCONS_00073501|organism=Clytia hemisphaerica|type=transcript|length=2305bp
GTCAttacaattttacaaaaaaagacaCAATGAATGAATCAAGAAGCACC
ACACCACACCGACATCATCAACCACTCAACATTTCTCTTCATACAAGATG
CTGCATTGAACAAACTCTTGCTCCTTTACAAAACATGAACACGAAAAGTC
TTGAAACGATGAACAAATTGTTGGCTCCCTGTCTACCTGATAGTGAAAAC
AGAGTCTTAAGTAGCCATGGGAACAAGACAAATATGCTTAAAGATAACCT
ATTCGGGTCTATCATTTTAACCTTGGTGCCATCAAGTGAGATTTCTACTA
ACCATGAAAATACAGACCACTGTCAAAAATATTTGTGTGAAACCCCGATC
AATCAAAACATGTATCCTTACATAACATTActaatagcaacacttctcat
CGCAACCATTGGCAATATTTTTGTTTGTAGCATCATCACCAAGATTCGAT
CATTACGTCAACATCCGACATACAAACTCTTAAAATCCTTAGCTGTTAGT
GATCTGCTGGTATCGCTACTCGTCTTACCGATCAAAATATCCATGGCTTT
AACCAACAATCATTTCTGCAGCTCAATCAACATATGTCGACTATATCAGA
CTGTTGAccatgtattttttactgcttcGATCACCCATCTGTTTGTTATT
GCTATAGATCGGTATCTGACAATCAGTCGACCTTTTAACTACCGGTTTGC
AGAAAAACATTACAGGATGATGATTTGTGTGGTATGGATATATGCAGCTC
TCTGGGGAGTTCTCAGCAATGTTGATTTTGAAACCTATCAATTCCAATCA
ACCTTCCATATCGATCATGGAAAATGCCAGCGGAAAGACATCATTTTCCC
ACGTGTTTTATTCATCGCAGTTTTCTTTTTGCCTTGTTTAGTCATGTTTT
ATATGCATGCTTGTGTATGGAAGATCGCTGTTGAtcaaggaaaaaaaatc
gagaaagaAAACACAccgacacttcaattcaaaAGACTAACAGGCGTAGA
GAATAGTGAAAAAAGCTCTAAACAACTGTTACCAAAATATCTCAAGCAGT
TTTCAAATTCTTCATCAGGAAAATTCAAAGTTGAGTTTCGCGCTACAAAG
ATTATTCTCTCCGTATTCGGCACCTATCTTATCTGCTGGGCACCTGTCAC
CATTATGACTTTCATGCGGACTTTCAGAACGTTCAACATCGACAAGAATG
CGTATTTGTTTCTGTGTAGCTTTCTACCAAATCTGAACAGTTGTCTAAAT
CCGTTTCTGTATTGTTTACTTCATCGAGACTTTATAAACGCGTTGAAAAC
AGTCTATAGGCGCCTAAAGTTTGTTAGTAAACATGAGATGTCGATCAAAC
ATAGAGCTAACACTGGTGAAATTATACGGACCAGAAAAGCAAACACTAGG
TGATATCTAGCGGACCAGAAGGTTAAAGATTACGCAAAAATATACGGACC
AAATACAAGTTTAGTAGTGTTATACGGACCAAAGGAGCAAACACTAGATA
ACATTATACGGACCAGAAGAGAAAACACTAGATAACATTATACGGACCAG
AAGAAAAAACACTAGATAATATTATGGGGACCAAAAGAGCAAACACTAGA
TACAATTataccatagtccgtataaaaaaacccagtctggaagccttttg
tttctttccattgtttcttacttgaacttgcgttgagaaattagtttgtt
ttgctcactgtTTGATCatttgattaaatcttaaaccaatcccaagagga
atacttggtaacgtgataaaaaactgagcaaatcgatttctatcttttga
tattaacaaaggaaaaagctaacaaaaaattaaaacaataagcATCCAGa
acagggttttttatacgaaCTATGATTATACGGACCAGAAGAGCAAACAC
TAGATAACATTATATGGACCAGAAGAGAACGTTTCGCTCCAAATGAGCAA
CGTACCTACTTATCTTTTGAATACAATGTTTGAAAAGAACCAAAGCAAAT
ATTCAAGGAAAAGTTGTCAACTAGATTCAAACAAAACAAGAGTCAAAGTA
ATATTTCCGTTTCTGGCAAAGAAAAACGGCTTGAAATGATTTGGAACGCT
ACGTAGTTTTGGCTCGCAATATCGAGGACAGACAATACACTCCGTCCTAA
TAAGCCAGTCAATCTAATAAAAAAGAAGACCCGCCACCGCTTGATTTCTA
TATTTAaggaatgaaaaaatattttcaatcacACGAACTACAGACTTCCT
AAAGATttcaatgatacaaaataaacgtTGTATCAGTACAGTGGGTGTAT
CTCGA
Run BLAST on NCBI

protein sequence of TCONS_00073501-protein

>TCONS_00073501-protein ID=TCONS_00073501-protein|Name=TCONS_00073501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
HYNFTKKDTMNESRSTTPHRHHQPLNISLHTRCCIEQTLAPLQNMNTKSL
ETMNKLLAPCLPDSENRVLSSHGNKTNMLKDNLFGSIILTLVPSSEISTN
HENTDHCQKYLCETPINQNMYPYITLLIATLLIATIGNIFVCSIITKIRS
LRQHPTYKLLKSLAVSDLLVSLLVLPIKISMALTNNHFCSSINICRLYQT
VDHVFFTASITHLFVIAIDRYLTISRPFNYRFAEKHYRMMICVVWIYAAL
WGVLSNVDFETYQFQSTFHIDHGKCQRKDIIFPRVLFIAVFFLPCLVMFY
MHACVWKIAVDQGKKIEKENTPTLQFKRLTGVENSEKSSKQLLPKYLKQF
SNSSSGKFKVEFRATKIILSVFGTYLICWAPVTIMTFMRTFRTFNIDKNA
YLFLCSFLPNLNSCLNPFLYCLLHRDFINALKTVYRRLKFVSKHEMSIKH
RANTGEIIRTRKANTR
Run BLAST on NCBI

transcript from alignment at scaffold_93:96934..100158-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073501 ID=TCONS_00073501|Name=TCONS_00073501|organism=Clytia hemisphaerica|type=transcript|length=3225bp|location=Sequence derived from alignment at scaffold_93:96934..100158- (Clytia hemisphaerica)
GTCATTACAATTTTACAAAAAAAGACACAATGAATGAATCAAGAAGCACC ACACCACACCGACATCATCAACCACTCAACATTTCTCTTCATACAAGATG CTGCATTGAACAAACTCTTGCTCCTTTACAAAACATGAACACGAAAAGTC TTGAAACGATGAACAAATTGTTGGCTCCCTGTCTACCTGATAGTGAAAAC AGAGTCTTAAGTAGCCATGGGAACAAGACAAATATGCTTAAAGATAACCT ATTCGGGTCTATCATTTTAACCTTGGTGCCATCAAGTGAGATTTCTACTA ACCATGAAAATACAGACCACTGTCAAAAATATTTGTGTGAAACCCCGATC AATCAAAACATGTATCCTTACATAACATTACTAATAGCAACACTTCTCAT CGCAACCATTGGCAATATTTTTGTTTGTAGCATCATCACCAAGATTCGAT CATTACGTCAACATCCGACATACAAACTCTTAAAATCCTTAGCTGTTAGT GATCTGCTGGTATCGCTACTCGTCTTACCGATCAAAATATCCATGGCTTT AACCAACAATCATTTCTGCAGCTCAATCAACATATGTCGACTATATCAGA CTGTTGACCATGTATTTTTTACTGCTTCGATCACCCATCTGTTTGTTATT GCTATAGATCGGTATCTGACAATCAGTCGACCTTTTAACTACCGGTTTGC AGAAAAACATTACAGGTATCACATTTTATCAAATTATATTTTTGTATCGC TTGAACAGCAGGCCTGTTTTCGGATCAAATATATATCAACAGTATTGCAG GAAACCCATCTGTATACACACGCACTATGAAAGGGGAGGCTAACAGTCAT TGATTTTTTCTTTGACATGTCTTGTAACTTGATTGCGAAGAAAAGAAATT AACGAAGCCAGTCCTGATATTTTTAGATGTTACTAATTCGATTACTTACA AGCTTTTAAGCTCTTTTACATGTATTGACACTATAAGTTTCCTCGAGTCG AATCTTTCAAAACAAGTCCGAGTGAAGAAAACGAGCTAAGTAAATTTCAT ACTCGAAGTTTTATGCCACATAGGATGGCATCTTTCAGTGAAATAAACGT TTCACTCAAAAATGTCATATATAAGATTCTCAATTAAGACATCTACTCGA TGTCAGCATATTAACCCCAATTGATGTTGTTTTGTTCTCTAGTTTCCCCA GTGCGTTTTGTGTCTTTTAAAGGTACCAAGTCAAATATTTCGCCTTTGGC ATACAACTTTTACCACTTTTACCACTTTTACCAGTTAAAGAAGATTGAGT TATTAAAGTTCGAGCTTCCAGCGGTCTGTGTGATGGTGTGATTGGCCCTT TTTTTATTGTAGTAGTGGTGTGTTCTATGATTTCAAAAGAGTGATGGTAC ATGTGATCACTCATCACTGTGATGGTGTCAAAAGATTTTTCTTTGTATAA TGACGCGATTAGAATTTAGTTTTGCTCCGCTAGGAGGGGCCTCTATGAAG ACTCTGGTGCATCAAATTTTCTTTAAATTTCAGGATGATGATTTGTGTGG TATGGATATATGCAGCTCTCTGGGGAGTTCTCAGCAATGTTGATTTTGAA ACCTATCAATTCCAATCAACCTTCCATATCGATCATGGAAAATGCCAGCG GAAAGACATCATTTTCCCACGTGTTTTATTCATCGCAGTTTTCTTTTTGC CTTGTTTAGTCATGTTTTATATGCATGCTTGTGTATGGAAGATCGCTGTT GATCAAGGAAAAAAAATCGAGAAAGAAAACACACCGACACTTCAATTCAA AAGACTAACAGGCGTAGAGAATAGTGAAAAAAGCTCTAAACAACTGTTAC CAAAATATCTCAAGCAGTTTTCAAATTCTTCATCAGGAAAATTCAAAGTT GAGTTTCGCGCTACAAAGATTATTCTCTCCGTATTCGGCACCTATCTTAT CTGCTGGGCACCTGTCACCATTATGACTTTCATGCGGACTTTCAGAACGT TCAACATCGACAAGAATGCGTATTTGTTTCTGTGTAGCTTTCTACCAAAT CTGAACAGTTGTCTAAATCCGTTTCTGTATTGTTTACTTCATCGAGACTT TATAAACGCGTTGAAAACAGTCTATAGGCGCCTAAAGTTTGTTAGTAAAC ATGAGATGTCGATCAAACATAGAGCTAACACTGGTGAAATTATACGGACC AGAAAAGCAAACACTAGGTGATATCTAGCGGACCAGAAGGTTAAAGATTA CGCAAAAATATACGGACCAAATACAAGTTTAGTAGTGTTATACGGACCAA AGGAGCAAACACTAGATAACATTATAAGGACCAGAGGGGAAAGCACTACA TAACATTATGCGGATCAAAAGAGCAAACACTAGATAAAATTATACGGACT AGAAGAGCAAAAACTATATAACATTATACGGACCAGAAGAGAAAACACTA GATAACATTATACGGACCAGAAGAAAAAACACTAGATAATATTATGGGGA CCAAAAGAGCAAACACTAGATACAATTATACCATAGTCCGTATAAAAAAA CCCAGTCTGGAAGCCTTTTGTTTCTTTCCATTGTTTCTTACTTGAACTTG CGTTGAGAAATTAGTTTGTTTTGCTCACTGTTTGATCATTTGATTAAATC TTAAACCAATCCCAAGAGGAATACTTGGTAACGTGATAAAAAACTGAGCA AATCGATTTCTATCTTTTGATATTAACAAAGGAAAAAGCTAACAAAAAAT TAAAACAATAAGCATCCAGAACAGGGTTTTTTATACGAACTATGATTATA CGGACCAGAAGAGCAAACACTAGATAACATTATATGGACCAGAAGAGAAC GTTTCGCTCCAAATGAGCAACGTACCTACTTATCTTTTGAATACAATGTT TGAAAAGAACCAAAGCAAATATTCAAGGAAAAGTTGTCAACTAGATTCAA ACAAAACAAGAGTCAAAGTAATATTTCCGTTTCTGGCAAAGAAAAACGGC TTGAAATGATTTGGAACGCTACGTAGTTTTGGCTCGCAATATCGAGGACA GACAATACACTCCGTCCTAATAAGCCAGTCAATCTAATAAAAAAGAAGAC CCGCCACCGCTTGATTTCTATATTTAAGGAATGAAAAAATATTTTCAATC ACACGAACTACAGACTTCCTAAAGATTTCAATGATACAAAATAAACGTTG TATCAGTACAGTGGGTGTATCTCGA

Coding sequence (CDS) from alignment at scaffold_93:96934..100158-

>TCONS_00073501 ID=TCONS_00073501|Name=TCONS_00073501|organism=Clytia hemisphaerica|type=CDS|length=2802bp|location=Sequence derived from alignment at scaffold_93:96934..100158- (Clytia hemisphaerica)
GATGATGATTTGTGTGGTATGGATATATGCAGCTCTCTGGGGAGTTCTCA
GCAATGTTGATTTTGAAACCTATCAATTCCAATCAACCTTCCATATCGAT
CATGGAAAATGCCAGCGGAAAGACATCATTTTCCCACGTGTTTTATTCAT
CGCAGTTTTCTTTTTGCCTTGTTTAGTCATGTTTTATATGCATGCTTGTG
TATGGAAGATCGCTGTTGATCAAGGAAAAAAAATCGAGAAAGAAAACACA
CCGACACTTCAATTCAAAAGACTAACAGGCGTAGAGAATAGTGAAAAAAG
CTCTAAACAACTGTTACCAAAATATCTCAAGCAGTTTTCAAATTCTTCAT
CAGGAAAATTCAAAGTTGAGTTTCGCGCTACAAAGATTATTCTCTCCGTA
TTCGGCACCTATCTTATCTGCTGGGCACCTGTCACCATTATGACTTTCAT
GCGGACTTTCAGAACGTTCAACATCGACAAGAATGCGTATTTGTTTCTGT
GTAGCTTTCTACCAAATCTGAACAGTTGTCTAAATCCGTTTCTGTATTGT
TTACTTCATCGAGACTTTATAAACGCGTTGAAAACAGTCTATAGGCGCCT
AAAGTTTGTTAGTAAACATGAGATGTCGATCAAACATAGAGCTAACACTG
GTGAAATTATACGGACCAGAAAAGCAAACACTAGGTGACATTACAATTTT
ACAAAAAAAGACACAATGAATGAATCAAGAAGCACCACACCACACCGACA
TCATCAACCACTCAACATTTCTCTTCATACAAGATGCTGCATTGAACAAA
CTCTTGCTCCTTTACAAAACATGAACACGAAAAGTCTTGAAACGATGAAC
AAATTGTTGGCTCCCTGTCTACCTGATAGTGAAAACAGAGTCTTAAGTAG
CCATGGGAACAAGACAAATATGCTTAAAGATAACCTATTCGGGTCTATCA
TTTTAACCTTGGTGCCATCAAGTGAGATTTCTACTAACCATGAAAATACA
GACCACTGTCAAAAATATTTGTGTGAAACCCCGATCAATCAAAACATGTA
TCCTTACATAACATTACTAATAGCAACACTTCTCATCGCAACCATTGGCA
ATATTTTTGTTTGTAGCATCATCACCAAGATTCGATCATTACGTCAACAT
CCGACATACAAACTCTTAAAATCCTTAGCTGTTAGTGATCTGCTGGTATC
GCTACTCGTCTTACCGATCAAAATATCCATGGCTTTAACCAACAATCATT
TCTGCAGCTCAATCAACATATGTCGACTATATCAGACTGTTGACCATGTA
TTTTTTACTGCTTCGATCACCCATCTGTTTGTTATTGCTATAGATCGGTA
TCTGACAATCAGTCGACCTTTTAACTACCGGTTTGCAGAAAAACATTACA
GGATGATGATTTGTGTGGTATGGATATATGCAGCTCTCTGGGGAGTTCTC
AGCAATGTTGATTTTGAAACCTATCAATTCCAATCAACCTTCCATATCGA
TCATGGAAAATGCCAGCGGAAAGACATCATTTTCCCACGTGTTTTATTCA
TCGCAGTTTTCTTTTTGCCTTGTTTAGTCATGTTTTATATGCATGCTTGT
GTATGGAAGATCGCTGTTGATCAAGGAAAAAAAATCGAGAAAGAAAACAC
ACCGACACTTCAATTCAAAAGACTAACAGGCGTAGAGAATAGTGAAAAAA
GCTCTAAACAACTGTTACCAAAATATCTCAAGCAGTTTTCAAATTCTTCA
TCAGGAAAATTCAAAGTTGAGTTTCGCGCTACAAAGATTATTCTCTCCGT
ATTCGGCACCTATCTTATCTGCTGGGCACCTGTCACCATTATGACTTTCA
TGCGGACTTTCAGAACGTTCAACATCGACAAGAATGCGTATTTGTTTCTG
TGTAGCTTTCTACCAAATCTGAACAGTTGTCTAAATCCGTTTCTGTATTG
TTTACTTCATCGAGACTTTATAAACGCGTTGAAAACAGTCTATAGGCGCC
TAAAGTTTGTTAGTAAACATGAGATGTCGATCAAACATAGAGCTAACACT
GGTGAAATTATACGGACCAGAAAAGCAAACACTAGGTGACATTACAATTT
TACAAAAAAAGACACAATGAATGAATCAAGAAGCACCACACCACACCGAC
ATCATCAACCACTCAACATTTCTCTTCATACAAGATGCTGCATTGAACAA
ACTCTTGCTCCTTTACAAAACATGAACACGAAAAGTCTTGAAACGATGAA
CAAATTGTTGGCTCCCTGTCTACCTGATAGTGAAAACAGAGTCTTAAGTA
GCCATGGGAACAAGACAAATATGCTTAAAGATAACCTATTCGGGTCTATC
ATTTTAACCTTGGTGCCATCAAGTGAGATTTCTACTAACCATGAAAATAC
AGACCACTGTCAAAAATATTTGTGTGAAACCCCGATCAATCAAAACATGT
ATCCTTACATAACATTACTAATAGCAACACTTCTCATCGCAACCATTGGC
AATATTTTTGTTTGTAGCATCATCACCAAGATTCGATCATTACGTCAACA
TCCGACATACAAACTCTTAAAATCCTTAGCTGTTAGTGATCTGCTGGTAT
CGCTACTCGTCTTACCGATCAAAATATCCATGGCTTTAACCAACAATCAT
TTCTGCAGCTCAATCAACATATGTCGACTATATCAGACTGTTGACCATGT
ATTTTTTACTGCTTCGATCACCCATCTGTTTGTTATTGCTATAGATCGGT
ATCTGACAATCAGTCGACCTTTTAACTACCGGTTTGCAGAAAAACATTAC
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045620XLOC_045620Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073501-proteinTCONS_00073501-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073501-exon-scaffold_93-1575043694:99444..100158TCONS_00073501-exon-scaffold_93-1575043694:99444..100158Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1575043694:97839..98625TCONS_00073501-exon-scaffold_93-1575043694:97839..98625Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1575043694:96934..97736TCONS_00073501-exon-scaffold_93-1575043694:96934..97736Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1510915933:99444..100158TCONS_00073501-exon-scaffold_93-1510915933:99444..100158Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1510915933:97839..98625TCONS_00073501-exon-scaffold_93-1510915933:97839..98625Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1510915933:96934..97736TCONS_00073501-exon-scaffold_93-1510915933:96934..97736Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1491911889:99444..100158TCONS_00073501-exon-scaffold_93-1491911889:99444..100158Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1491911889:97839..98625TCONS_00073501-exon-scaffold_93-1491911889:97839..98625Clytia hemisphaericaexon
TCONS_00073501-exon-scaffold_93-1491911889:96934..97736TCONS_00073501-exon-scaffold_93-1491911889:96934..97736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_93supercontigscaffold_93:96934..100158 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.05601 0.0884861 0.0632617 0 0 0 0.0350044 0.0349558 0.0726038 0 0 0 0.0404414 0 0 0 0 1.50635 1.51206 2.23598 1.96882 12.072 8.722 0.116674 0.116101
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073501 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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