TCONS_00073501-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00073501-protein
Unique Name	TCONS_00073501-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	466

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00073501-protein ID=TCONS_00073501-protein|Name=TCONS_00073501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
HYNFTKKDTMNESRSTTPHRHHQPLNISLHTRCCIEQTLAPLQNMNTKSL
ETMNKLLAPCLPDSENRVLSSHGNKTNMLKDNLFGSIILTLVPSSEISTN
HENTDHCQKYLCETPINQNMYPYITLLIATLLIATIGNIFVCSIITKIRS
LRQHPTYKLLKSLAVSDLLVSLLVLPIKISMALTNNHFCSSINICRLYQT
VDHVFFTASITHLFVIAIDRYLTISRPFNYRFAEKHYRMMICVVWIYAAL
WGVLSNVDFETYQFQSTFHIDHGKCQRKDIIFPRVLFIAVFFLPCLVMFY
MHACVWKIAVDQGKKIEKENTPTLQFKRLTGVENSEKSSKQLLPKYLKQF
SNSSSGKFKVEFRATKIILSVFGTYLICWAPVTIMTFMRTFRTFNIDKNA
YLFLCSFLPNLNSCLNPFLYCLLHRDFINALKTVYRRLKFVSKHEMSIKH
RANTGEIIRTRKANTR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045620	XLOC_045620	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00073501	TCONS_00073501	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 364..388 score: 23.78 coord: 283..306 score: 19.0 coord: 122..146 score: 19.96 coord: 202..224 score: 36.36 coord: 156..177 score: 36.7 coord: 402..428 score: 28.96
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 137..420 e-value: 3.0E-43 score: 147.9
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 208..224
None	No IPR available	GENE3D	1.20.1070.10		coord: 88..466 e-value: 3.9E-62 score: 209.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 97..317 coord: 353..450
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 137..420 score: 36.039

Blast

[Close]

BLAST of TCONS_00073501-protein vs. Swiss-Prot (Human)
Match: ADRB2 (Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB2 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 6.353e-22
Identity = 83/312 (26.60%), Postives = 151/312 (48.40%), Query Frame = 0

Query:  127 LIATLLIATI--GNIFVCSIITKIRSLRQHPTYKLLKSLAVSDLLVSLLVLPIKISMAL----TNNHFCSSINICRLYQTVDHVFFTASITHLFVIAIDRYLTISRPFNYR--FAEKHYRMMICVVWIYAALWGVLSNVDFETYQFQSTFHIDHGKCQRKDI--------IFPRVLFIAVFFLPCLVMFYMHACVWKIAVDQGKKIEKENTPTLQFKRLTGVENSEKSSKQLLPKYLKQFSNSSSGKFKV-EFRATKIILSVFGTYLICWAPVTIMTFMRTFRTFNIDKNAYLFLCSFLPNLNSCLNPFLYC 421
            ++ +L++  I  GN+ V + I K   L+    Y  + SLA +DL++ L V+P   +  L    T  +F      C  + ++D +  TASI  L VIA+DRY  I+ PF Y+    +   R++I +VWI +   G+ S +  + + +++T H +   C   +          +     I  F++P ++M ++++ V++ A  Q +KI+K        + L+ VE   ++   L            S KF + E +A K +  + GT+ +CW P  I+  +   +   I K  Y+ L +++  +NS  NP +YC
Sbjct:   38 IVMSLIVLAIVFGNVLVITAIAKFERLQTVTNY-FITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW-----CEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVS---GLTSFLPIQMHWYRAT-HQEAINCYANETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEG-RFHVQNLSQVEQDGRTGHGL----------RRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILL-NWIGYVNSGFNPLIYC 327

The following BLAST results are available for this feature:

BLAST of TCONS_00073501-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00073501-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ADRB2	6.353e-22	26.60	Beta-2 adrenergic receptor OS=Homo sapiens GN=ADRB...	[more]

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TCONS_00073501-protein (polypeptide) - C. hemisphaerica