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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073463 ID=TCONS_00073463|Name=TCONS_00073463|organism=Clytia hemisphaerica|type=transcript|length=2122bpRun BLAST on NCBI transcript from alignment at scaffold_92:136919..157194- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073463 ID=TCONS_00073463|Name=TCONS_00073463|organism=Clytia hemisphaerica|type=transcript|length=20276bp|location=Sequence derived from alignment at scaffold_92:136919..157194- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00073463 vs. Swiss-Prot (Human)
Match: P4R3A (Serine/threonine-protein phosphatase 4 regulatory subunit 3A OS=Homo sapiens GN=PPP4R3A PE=1 SV=1) HSP 1 Score: 427.172 bits (1097), Expect = 5.466e-137 Identity = 236/566 (41.70%), Postives = 353/566 (62.37%), Query Frame = 1
Query: 469 KRVKLYKAQEQESGGEPAWKDLGVGDINIVPNSDSDYFRSNYYGGMIMLMNSEEDGSVIFRNPVSTRVQYQEQGDVIILWTEVDGPKETFALSFMDQENRDDFLTHIEETKLKLERSDKNGDAYKGLDDQDFDMHGQGLGMDLSSEESLAIPPCEFSKLNALNETLQRYLQSKNLHDDLVTLLEAQGYIPKLIEIFHMCEDLENTDALHTLYSIFKTLFMLEKNAIFETMFSQEYILDIVGILEYDPSKTTRTPHREHINDRVQFKEVIPIANKELLAKIHQTFRVQYIKDILIPVPLIFDETG-TTLSSFIFFNKVQIIDLIKEDQHFLDELFEQLTNDEVSDDKRKDIILLLKELCVYSQSLQPARREEFIKMLANIGMLQSIEQLLNIDDKDIQQALIDIVCTITECTPSIIRIYVCREASYTID------------EDTMMLNVMISHLVNCETE---GMSVILLQTLQTLLDPENMCQTANSTIERSEFLSFFYRHNMHVLTSPVLAVTATDELVGKDDFQRATVFDNIVNLLTFCVEHHQSSIKNYIVSKDMLRRVLVLL 2118
+RVK+Y E W D G G ++ S Y GM +L+ +E DGS++ + ++ YQ+Q D +I+W+E + ALSF ++ D+ I + + K D D +++ FD D+SS L +P CE S+L + E + L S + L LE +GYI KL+E+FH+CEDLEN + LH LY I K +F+L + A+FE MFS+E I+D++G LEYDP+ + HRE + +FKEVIPI++ EL KIHQT+RVQYI+D+++P P +F+E +TL SFIFFNKV+I+ +++ED+ FL +LF QLT++ ++KR++++ LKE C +SQ+LQP R+ F K L+N+G+L ++E +L +DD ++ A DI + E PS++R +V +EA D +D +++N++I H++ C+T+ G +V L+ L+TL+DPENM TAN T E++EFL FFY+H MHVLT+P+LA T D+ KDDFQ A + ++ LLTFCVEHH IKNYI++KD+LRRVLVL+
Sbjct: 6 RRVKVYTLNEDRQ-----WDDRGTGHVS------SGYVER--LKGMSLLVRAESDGSLLLESKINPNTAYQKQQDTLIVWSEAEN--YDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEERFD--------DMSSP-GLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDVSKKLTEQKITSKDILLINLIIEHMI-CDTDPELGGAVQLMGLLRTLVDPENMLATANKT-EKTEFLGFFYKHCMHVLTAPLLANTTEDK-PSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLM 544 The following BLAST results are available for this feature:
BLAST of TCONS_00073463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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