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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073453 ID=TCONS_00073453|Name=TCONS_00073453|organism=Clytia hemisphaerica|type=transcript|length=930bp
CACTAATTTGCACGTTTTTTCAAGCTTCATTCATTTTTTGCATTAATTTT
CTAGAAAATACTAACCATAAATTTCgaatataaaaaacaaattaacaAAA
TGGCATCAGACAATGTgagcaaaacaatgaaaatcattTCAACAGTCAGC
TTGGGACATCTGGCAGGAATTACAGCATTTAAAAGCAGTTGCATACAACC
TGCTCTTGAAGAACAAGAAGATGTACCAGCTGCAGCCAAGACCATGTCAT
GTATCTTGAAGCGTTCATCTGTTCTCCCGATCGTCAGTATCGTTTCATCA
GCCTCTTCTCTCTACGTTTATTACAAATCGTATGGTACAAAGAGCGAGGA
TGAGTTCTACCTCATCTCATCACTTATGATCGGTGGTTTGGTCCCATACA
CAGCTTGGATGTTATTACCCATAAACCAACACTTCTTATCAGAAGGTGAA
ACGTTCGAACACTCAgatgaaaaatggaaattccTAATGAAAGATTGGAA
GAAATGGCATCTACCTAGATCTGTCGTTTGTGCTTCTTTATTCTCGATGG
CCGTATATAAATTGGTGTTTTAAACTGGTCGTGTTTGAGGAAATATTGGT
TTTGAACCTCGGCTGGCCGTCAAATACGCTCTTCCTGGAAAGTTTTATCA
ACAGACTGAGCACGTGATGTCATGGAAACGAGGTTACCGTTTCTCATTTA
AAACATCTTTACGTCCTTCTTAAGAAAGATATTTAACGTAAAAATAACGT
TTTTTACCTCCAAACATATTTTTAATTTAAGATAGTTATACCGGTTATAC
ACGAGTTGCTCAATTTCAAATCGAATTACCTTGTTTCTTCTCTTCATCCT
TCATTTAAGAAAGTATCAATTCTTGGCTACAGTAATTTTCTTTACGTTCA
TCTTATTCATCTTTCTACATAATTTCCTCA Run BLAST on NCBI protein sequence of TCONS_00073453-protein >TCONS_00073453-protein ID=TCONS_00073453-protein|Name=TCONS_00073453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MASDNVSKTMKIISTVSLGHLAGITAFKSSCIQPALEEQEDVPAAAKTMS
CILKRSSVLPIVSIVSSASSLYVYYKSYGTKSEDEFYLISSLMIGGLVPY
TAWMLLPINQHFLSEGETFEHSDEKWKFLMKDWKKWHLPRSVVCASLFSM
AVYKLVF Run BLAST on NCBI transcript from alignment at scaffold_92:236890..240906+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073453 ID=TCONS_00073453|Name=TCONS_00073453|organism=Clytia hemisphaerica|type=transcript|length=4017bp|location=Sequence derived from alignment at scaffold_92:236890..240906+ (Clytia hemisphaerica)
CACTAATTTGCACGTTTTTTCAAGCTTCATTCATTTTTTGCATTAATTTT
CTAGAAAATACTAACCATAAATTTCgaatataaaaaacaaattaacaAAA
TGGCATCAGACAATGTgagcaaaacaatgaaaatcattTCAACAGTCAGC
TTGGGACATCTGGCAGGAATTACAGCATTTAAAAGCAGTTGCATACAACC
TGCTCTTGAAGAACAAGAAGATGTACCAGCTGCAGCCAAGGTATACAtct
caactttctttttttCGTCCACTTTATTCATCATTTCGACCCTAGTTGTA
CAGACAGACGCGTGCCATTTAATTGCTTATGATCGTCCTAAGCTCGATCT
AATCCTTTTTGACGCCCTTTTCTTTCGTATTTATGTGCGAGAAAAAGACT
TGAGACCGGTTTAAGGTGATGTAACTGGACAAAAAAAGTGCTGATCTGCT
GCTACGGTTGCAAAGGTGTTTCACTTTAACAACAACTTCTAAGTACTAca
accaggggggggggcacgcagttactacaagacatgaagtgctttttcaa
cactttttttcaggaccaccaccctttgcagttactacaccttggtagta
actgttttcagaaaagatttccaggtaccacccttgtttttgagtgatat
catcaaaaacatgctcgaaattatCCTAAATTGCGATtgtttttcaacct
aaagccatttttgtgctagattttcttttaatttacttggttaacagctg
ttgagaacattttaatgataattagggaaagcataatttcaaagttgggt
ctgagaaaaatttcaaatttttttcgtccatttatatcaaaaatattttt
tttaacaaagaattttttcacaaaaaaattcattttttgtgaaaaatttt
gaaagttcttttaaaagaattaaaatacaaGCACTTgatacaccaaaagt
gctagttttagtgtttggcaccacccccaaacagcagttactacactgtg
tagtaactgttttcataacttctgaatacagtaccaccacggtagtaagt
gtcatactgtcttgtagtaactgcgtgcccccccctgcTACAACCAATAT
AATCGATATGAACAGTTTAGAACAGTAAAATGAAAACTGTTATTTACTGT
GATATATCCTAAAGGGCCTAAAGGCATTTGATATTGATTGATCCCTGCTC
CCAAAAGTTATGTTAACCACCTAAGGCTGAATTTTAAGCTTggcaaattt
aaaaatgaaataaatattttcttccttATTATCGTCGCAGTGTCGAGTTT
ATAGTGGTTTCAGTGGGCTCTTTTAATTTATAATCCTCTCGACTTAGCTA
AGGGGCCGTAAAACCGTGGTCTGCAAAATAGCTAGTTTTtcgtgaattga
aaaattggtgTCTTCATTCTTTAATTTCGATCAATTATCGATTCTTATTC
ATTCAGTTTCAACtatgaataaaatttcaactttttctttttcatataaa
agaaaaattagcaTCATAAATGCAAGTGAAAGGCTGTGGGATGCATTTAA
AGTTATGTACTAAAATCATAGTTTTTCCAAAACTGCACGGGTTTGAGTaa
cttttgaaagtttatttttcttgaaataactCAACATTACTTCGTGTGAG
GTCCTCCGAAGTAGGGGCTAATTCCAGATGCAAAAGAAAAGCAGAAAAAT
CCTAAGAAGTGTCACAAAAATCTCAACTTTAACTTTGAAGCCGCATAGGT
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATTCAGCTTGACAGATCTCTTCCTGTGAACAGTTATGAACGCTGAGAAA
GACTCAAGTGATAAGAATTCTACAAAGAGGAGGGTAGCCAGACAGGAGAC
AGGGGTGGTTGGTTGGTTTCTAGCAATATTTCTGGAAGGAAGTTTTCCCA
TGCATTGAAGTATTGTCAATTTTTAAAGGAGGATTTTGATATGAACTGGA
CAGCAATCAAtcggtttttcatttttccaccTCAAAGTCAAAGAAGTAGG
AGTACTGAGCgggaaaaacaaaagaacaaaaaatgcAAAGAAACTGAGAC
TACATATTTTACAAAGCATTGCTTACCTTCTTGTATCGACAAAATGCTTT
CTAAATCAAACTGCACCAttacaataatttcttccttttccAACAGTCTT
GATTTGTTGATGTGATGTGGCTTGAAATTCTTCTTTTACTTCTTTTTTCC
TTGCTTGAGTAGCCAACCAAATATCGAAAAAATCTATATCGAGCTGCAGA
GATCCACCTAAAACTTATTTGAACCGATAACAAAAATTTGAACACAGAAA
ACTGAGGTTAACGAAGCCTTTCTCTTTCTCCTCATTATTGAGagatattt
tgaatgaaatattGCAGCAGAAATGCTCTTGGTTTATTAAGATGAAGAAC
ATATCCATAGATTGAATGATGGTCCTTCCATTAAATACAAAGGCATCTTT
CAAACAAAGAAACTTTGAGTGACCTGCTAAGAAAAATCTCCCACCCCTCT
ATtcgcttttttgaaaaaataaagtggACTTCGAGAAATTTCCATACAAA
ACATTTCCAAGACCGTCCAGATTGCTCACACATACCAAATTAAAATCgaa
taaaacattcgaaaaatagTCACGCGCGTGTGTTCGAtgataaacattcg
aatcttaAAAAGCTAGTTTACACGGCGAAAAAAGAGAAGAATTGAAACAA
GGCTCTATTTATACTCGCGCGcggagaaaaacaaaatttttcgaaaaatc
acgTCCTTAGACAACTCGAGCTAAAATACTCCAAAGTCAGTTCTTACATT
TTTTgattatcttctttttttccaCAGACCATGTCATGTATCTTGAAGCG
TTCATCTGTTCTCCCGATCGTCAGTATCGTTTCATCAGCCTCTTCTCTCT
ACGTTTATTACAAATCGTATGGTACAAAGAGCGAGGATGAGTTCTACCTC
ATCTCATCACTTATGATCGGTGGTTTGGTCCCATACACAGCTTGGATGTT
ATTACCCATAAACCAACACTTCTTATCAGAAGGTGAAACGTTCGAACACT
CAgatgaaaaatggaaattccTAATGAAAGATTGGAAGAAATGGCATCTA
CCTAGATCTGTCGTTTGTGCTTCTTTATTCTCGATGGCCGTATATAAATT
GGTGTTTTAAACTGGTCGTGTTTGAGGAAATATTGGTTTTGAACCTCGGC
TGGCCGTCAAATACGCTCTTCCTGGAAAGTTTTATCAACAGACTGAGCAC
GTGATGTCATGGAAACGAGGTTACCGTTTCTCATTTAAAACATCTTTACG
TCCTTCTTAAGAAAGATATTTAACGTAAAAATAACGTTTTTTACCTCCAA
ACATATTTTTAATTTAAGATAGTTATACCGGTTATACACGAGTTGCTCAA
TTTCAAATCGAATTACCTTGTTTCTTCTCTTCATCCTTCATTTAAGAAAG
TATCAATTCTTGGCTACAGTAATTTTCTTTACGTTCATCTTATTCATCTT
TCTACATAATTTCCTCA Coding sequence (CDS) from alignment at scaffold_92:236890..240906+ >TCONS_00073453 ID=TCONS_00073453|Name=TCONS_00073453|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_92:236890..240906+ (Clytia hemisphaerica)
ATGGCATCAGACAATGTgagcaaaacaatgaaaatcattTCAACAGTCAG
CTTGGGACATCTGGCAGGAATTACAGCATTTAAAAGCAGTTGCATACAAC
CTGCTCTTGAAGAACAAGAAGATGTACCAGCTGCAGCCAAGACCATGTCA
TGTATCTTGAAGCGTTCATCTGTTCTCCCGATCGTCAGTATCGTTTCATC
AGCCTCTTCTCTCTACGTTTATTACAAATCGTATGGTACAAAGAGCGAGG
ATGAGTTCTACCTCATCTCATCACTTATGATCGGTGGTTTGGTCCCATAC
ACAGCTTGGATGTTATTACCCATAAACCAACACTTCTTATCAGAAGGTGA
AACGTTCGAACACTCAgatgaaaaatggaaattccTAATGAAAGATTGGA
AGAAATGGCATCTACCTAGATCTGTCGTTTGTGCTTCTTTATTCTCGATG
GCCGTATATAAATTGGTGTTTTAAATGGCATCAGACAATGTgagcaaaac
aatgaaaatcattTCAACAGTCAGCTTGGGACATCTGGCAGGAATTACAG
CATTTAAAAGCAGTTGCATACAACCTGCTCTTGAAGAACAAGAAGATGTA
CCAGCTGCAGCCAAGACCATGTCATGTATCTTGAAGCGTTCATCTGTTCT
CCCGATCGTCAGTATCGTTTCATCAGCCTCTTCTCTCTACGTTTATTACA
AATCGTATGGTACAAAGAGCGAGGATGAGTTCTACCTCATCTCATCACTT
ATGATCGGTGGTTTGGTCCCATACACAGCTTGGATGTTATTACCCATAAA
CCAACACTTCTTATCAGAAGGTGAAACGTTCGAACACTCAgatgaaaaat
ggaaattccTAATGAAAGATTGGAAGAAATGGCATCTACCTAGATCTGTC
GTTTGTGCTTCTTTATTCTCGATGGCCGTATATAAATTGGTGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073453-exon-scaffold_92-1491911889:236890..237129 | TCONS_00073453-exon-scaffold_92-1491911889:236890..237129 | Clytia hemisphaerica | exon |
| TCONS_00073453-exon-scaffold_92-1510915933:236890..237129 | TCONS_00073453-exon-scaffold_92-1510915933:236890..237129 | Clytia hemisphaerica | exon |
| TCONS_00073453-exon-scaffold_92-1575043694:236890..237129 | TCONS_00073453-exon-scaffold_92-1575043694:236890..237129 | Clytia hemisphaerica | exon |
| TCONS_00073453-exon-scaffold_92-1491911889:240217..240906 | TCONS_00073453-exon-scaffold_92-1491911889:240217..240906 | Clytia hemisphaerica | exon |
| TCONS_00073453-exon-scaffold_92-1510915933:240217..240906 | TCONS_00073453-exon-scaffold_92-1510915933:240217..240906 | Clytia hemisphaerica | exon |
| TCONS_00073453-exon-scaffold_92-1575043694:240217..240906 | TCONS_00073453-exon-scaffold_92-1575043694:240217..240906 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_92 | supercontig | scaffold_92:236890..240906 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013901 | Anthrone_oxy |
Blast
The following BLAST results are available for this feature:
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