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TCONS_00073453 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073453
Unique NameTCONS_00073453
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073453 ID=TCONS_00073453|Name=TCONS_00073453|organism=Clytia hemisphaerica|type=transcript|length=930bp
CACTAATTTGCACGTTTTTTCAAGCTTCATTCATTTTTTGCATTAATTTT
CTAGAAAATACTAACCATAAATTTCgaatataaaaaacaaattaacaAAA
TGGCATCAGACAATGTgagcaaaacaatgaaaatcattTCAACAGTCAGC
TTGGGACATCTGGCAGGAATTACAGCATTTAAAAGCAGTTGCATACAACC
TGCTCTTGAAGAACAAGAAGATGTACCAGCTGCAGCCAAGACCATGTCAT
GTATCTTGAAGCGTTCATCTGTTCTCCCGATCGTCAGTATCGTTTCATCA
GCCTCTTCTCTCTACGTTTATTACAAATCGTATGGTACAAAGAGCGAGGA
TGAGTTCTACCTCATCTCATCACTTATGATCGGTGGTTTGGTCCCATACA
CAGCTTGGATGTTATTACCCATAAACCAACACTTCTTATCAGAAGGTGAA
ACGTTCGAACACTCAgatgaaaaatggaaattccTAATGAAAGATTGGAA
GAAATGGCATCTACCTAGATCTGTCGTTTGTGCTTCTTTATTCTCGATGG
CCGTATATAAATTGGTGTTTTAAACTGGTCGTGTTTGAGGAAATATTGGT
TTTGAACCTCGGCTGGCCGTCAAATACGCTCTTCCTGGAAAGTTTTATCA
ACAGACTGAGCACGTGATGTCATGGAAACGAGGTTACCGTTTCTCATTTA
AAACATCTTTACGTCCTTCTTAAGAAAGATATTTAACGTAAAAATAACGT
TTTTTACCTCCAAACATATTTTTAATTTAAGATAGTTATACCGGTTATAC
ACGAGTTGCTCAATTTCAAATCGAATTACCTTGTTTCTTCTCTTCATCCT
TCATTTAAGAAAGTATCAATTCTTGGCTACAGTAATTTTCTTTACGTTCA
TCTTATTCATCTTTCTACATAATTTCCTCA
Run BLAST on NCBI

protein sequence of TCONS_00073453-protein

>TCONS_00073453-protein ID=TCONS_00073453-protein|Name=TCONS_00073453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MASDNVSKTMKIISTVSLGHLAGITAFKSSCIQPALEEQEDVPAAAKTMS
CILKRSSVLPIVSIVSSASSLYVYYKSYGTKSEDEFYLISSLMIGGLVPY
TAWMLLPINQHFLSEGETFEHSDEKWKFLMKDWKKWHLPRSVVCASLFSM
AVYKLVF
Run BLAST on NCBI

transcript from alignment at scaffold_92:236890..240906+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073453 ID=TCONS_00073453|Name=TCONS_00073453|organism=Clytia hemisphaerica|type=transcript|length=4017bp|location=Sequence derived from alignment at scaffold_92:236890..240906+ (Clytia hemisphaerica)
CACTAATTTGCACGTTTTTTCAAGCTTCATTCATTTTTTGCATTAATTTT CTAGAAAATACTAACCATAAATTTCgaatataaaaaacaaattaacaAAA TGGCATCAGACAATGTgagcaaaacaatgaaaatcattTCAACAGTCAGC TTGGGACATCTGGCAGGAATTACAGCATTTAAAAGCAGTTGCATACAACC TGCTCTTGAAGAACAAGAAGATGTACCAGCTGCAGCCAAGGTATACAtct caactttctttttttCGTCCACTTTATTCATCATTTCGACCCTAGTTGTA CAGACAGACGCGTGCCATTTAATTGCTTATGATCGTCCTAAGCTCGATCT AATCCTTTTTGACGCCCTTTTCTTTCGTATTTATGTGCGAGAAAAAGACT TGAGACCGGTTTAAGGTGATGTAACTGGACAAAAAAAGTGCTGATCTGCT GCTACGGTTGCAAAGGTGTTTCACTTTAACAACAACTTCTAAGTACTAca accaggggggggggcacgcagttactacaagacatgaagtgctttttcaa cactttttttcaggaccaccaccctttgcagttactacaccttggtagta actgttttcagaaaagatttccaggtaccacccttgtttttgagtgatat catcaaaaacatgctcgaaattatCCTAAATTGCGATtgtttttcaacct aaagccatttttgtgctagattttcttttaatttacttggttaacagctg ttgagaacattttaatgataattagggaaagcataatttcaaagttgggt ctgagaaaaatttcaaatttttttcgtccatttatatcaaaaatattttt tttaacaaagaattttttcacaaaaaaattcattttttgtgaaaaatttt gaaagttcttttaaaagaattaaaatacaaGCACTTgatacaccaaaagt gctagttttagtgtttggcaccacccccaaacagcagttactacactgtg tagtaactgttttcataacttctgaatacagtaccaccacggtagtaagt gtcatactgtcttgtagtaactgcgtgcccccccctgcTACAACCAATAT AATCGATATGAACAGTTTAGAACAGTAAAATGAAAACTGTTATTTACTGT GATATATCCTAAAGGGCCTAAAGGCATTTGATATTGATTGATCCCTGCTC CCAAAAGTTATGTTAACCACCTAAGGCTGAATTTTAAGCTTggcaaattt aaaaatgaaataaatattttcttccttATTATCGTCGCAGTGTCGAGTTT ATAGTGGTTTCAGTGGGCTCTTTTAATTTATAATCCTCTCGACTTAGCTA AGGGGCCGTAAAACCGTGGTCTGCAAAATAGCTAGTTTTtcgtgaattga aaaattggtgTCTTCATTCTTTAATTTCGATCAATTATCGATTCTTATTC ATTCAGTTTCAACtatgaataaaatttcaactttttctttttcatataaa agaaaaattagcaTCATAAATGCAAGTGAAAGGCTGTGGGATGCATTTAA AGTTATGTACTAAAATCATAGTTTTTCCAAAACTGCACGGGTTTGAGTaa cttttgaaagtttatttttcttgaaataactCAACATTACTTCGTGTGAG GTCCTCCGAAGTAGGGGCTAATTCCAGATGCAAAAGAAAAGCAGAAAAAT CCTAAGAAGTGTCACAAAAATCTCAACTTTAACTTTGAAGCCGCATAGGT CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NATTCAGCTTGACAGATCTCTTCCTGTGAACAGTTATGAACGCTGAGAAA GACTCAAGTGATAAGAATTCTACAAAGAGGAGGGTAGCCAGACAGGAGAC AGGGGTGGTTGGTTGGTTTCTAGCAATATTTCTGGAAGGAAGTTTTCCCA TGCATTGAAGTATTGTCAATTTTTAAAGGAGGATTTTGATATGAACTGGA CAGCAATCAAtcggtttttcatttttccaccTCAAAGTCAAAGAAGTAGG AGTACTGAGCgggaaaaacaaaagaacaaaaaatgcAAAGAAACTGAGAC TACATATTTTACAAAGCATTGCTTACCTTCTTGTATCGACAAAATGCTTT CTAAATCAAACTGCACCAttacaataatttcttccttttccAACAGTCTT GATTTGTTGATGTGATGTGGCTTGAAATTCTTCTTTTACTTCTTTTTTCC TTGCTTGAGTAGCCAACCAAATATCGAAAAAATCTATATCGAGCTGCAGA GATCCACCTAAAACTTATTTGAACCGATAACAAAAATTTGAACACAGAAA ACTGAGGTTAACGAAGCCTTTCTCTTTCTCCTCATTATTGAGagatattt tgaatgaaatattGCAGCAGAAATGCTCTTGGTTTATTAAGATGAAGAAC ATATCCATAGATTGAATGATGGTCCTTCCATTAAATACAAAGGCATCTTT CAAACAAAGAAACTTTGAGTGACCTGCTAAGAAAAATCTCCCACCCCTCT ATtcgcttttttgaaaaaataaagtggACTTCGAGAAATTTCCATACAAA ACATTTCCAAGACCGTCCAGATTGCTCACACATACCAAATTAAAATCgaa taaaacattcgaaaaatagTCACGCGCGTGTGTTCGAtgataaacattcg aatcttaAAAAGCTAGTTTACACGGCGAAAAAAGAGAAGAATTGAAACAA GGCTCTATTTATACTCGCGCGcggagaaaaacaaaatttttcgaaaaatc acgTCCTTAGACAACTCGAGCTAAAATACTCCAAAGTCAGTTCTTACATT TTTTgattatcttctttttttccaCAGACCATGTCATGTATCTTGAAGCG TTCATCTGTTCTCCCGATCGTCAGTATCGTTTCATCAGCCTCTTCTCTCT ACGTTTATTACAAATCGTATGGTACAAAGAGCGAGGATGAGTTCTACCTC ATCTCATCACTTATGATCGGTGGTTTGGTCCCATACACAGCTTGGATGTT ATTACCCATAAACCAACACTTCTTATCAGAAGGTGAAACGTTCGAACACT CAgatgaaaaatggaaattccTAATGAAAGATTGGAAGAAATGGCATCTA CCTAGATCTGTCGTTTGTGCTTCTTTATTCTCGATGGCCGTATATAAATT GGTGTTTTAAACTGGTCGTGTTTGAGGAAATATTGGTTTTGAACCTCGGC TGGCCGTCAAATACGCTCTTCCTGGAAAGTTTTATCAACAGACTGAGCAC GTGATGTCATGGAAACGAGGTTACCGTTTCTCATTTAAAACATCTTTACG TCCTTCTTAAGAAAGATATTTAACGTAAAAATAACGTTTTTTACCTCCAA ACATATTTTTAATTTAAGATAGTTATACCGGTTATACACGAGTTGCTCAA TTTCAAATCGAATTACCTTGTTTCTTCTCTTCATCCTTCATTTAAGAAAG TATCAATTCTTGGCTACAGTAATTTTCTTTACGTTCATCTTATTCATCTT TCTACATAATTTCCTCA

Coding sequence (CDS) from alignment at scaffold_92:236890..240906+

>TCONS_00073453 ID=TCONS_00073453|Name=TCONS_00073453|organism=Clytia hemisphaerica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_92:236890..240906+ (Clytia hemisphaerica)
ATGGCATCAGACAATGTgagcaaaacaatgaaaatcattTCAACAGTCAG
CTTGGGACATCTGGCAGGAATTACAGCATTTAAAAGCAGTTGCATACAAC
CTGCTCTTGAAGAACAAGAAGATGTACCAGCTGCAGCCAAGACCATGTCA
TGTATCTTGAAGCGTTCATCTGTTCTCCCGATCGTCAGTATCGTTTCATC
AGCCTCTTCTCTCTACGTTTATTACAAATCGTATGGTACAAAGAGCGAGG
ATGAGTTCTACCTCATCTCATCACTTATGATCGGTGGTTTGGTCCCATAC
ACAGCTTGGATGTTATTACCCATAAACCAACACTTCTTATCAGAAGGTGA
AACGTTCGAACACTCAgatgaaaaatggaaattccTAATGAAAGATTGGA
AGAAATGGCATCTACCTAGATCTGTCGTTTGTGCTTCTTTATTCTCGATG
GCCGTATATAAATTGGTGTTTTAAATGGCATCAGACAATGTgagcaaaac
aatgaaaatcattTCAACAGTCAGCTTGGGACATCTGGCAGGAATTACAG
CATTTAAAAGCAGTTGCATACAACCTGCTCTTGAAGAACAAGAAGATGTA
CCAGCTGCAGCCAAGACCATGTCATGTATCTTGAAGCGTTCATCTGTTCT
CCCGATCGTCAGTATCGTTTCATCAGCCTCTTCTCTCTACGTTTATTACA
AATCGTATGGTACAAAGAGCGAGGATGAGTTCTACCTCATCTCATCACTT
ATGATCGGTGGTTTGGTCCCATACACAGCTTGGATGTTATTACCCATAAA
CCAACACTTCTTATCAGAAGGTGAAACGTTCGAACACTCAgatgaaaaat
ggaaattccTAATGAAAGATTGGAAGAAATGGCATCTACCTAGATCTGTC
GTTTGTGCTTCTTTATTCTCGATGGCCGTATATAAATTGGTGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045588XLOC_045588Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073453-proteinTCONS_00073453-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073453-exon-scaffold_92-1491911889:236890..237129TCONS_00073453-exon-scaffold_92-1491911889:236890..237129Clytia hemisphaericaexon
TCONS_00073453-exon-scaffold_92-1510915933:236890..237129TCONS_00073453-exon-scaffold_92-1510915933:236890..237129Clytia hemisphaericaexon
TCONS_00073453-exon-scaffold_92-1575043694:236890..237129TCONS_00073453-exon-scaffold_92-1575043694:236890..237129Clytia hemisphaericaexon
TCONS_00073453-exon-scaffold_92-1491911889:240217..240906TCONS_00073453-exon-scaffold_92-1491911889:240217..240906Clytia hemisphaericaexon
TCONS_00073453-exon-scaffold_92-1510915933:240217..240906TCONS_00073453-exon-scaffold_92-1510915933:240217..240906Clytia hemisphaericaexon
TCONS_00073453-exon-scaffold_92-1575043694:240217..240906TCONS_00073453-exon-scaffold_92-1575043694:240217..240906Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:236890..240906 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.8063 34.0686 13.1485 13.2998 11.878 8.54716 28.0885 28.9021 18.8667 16.8465 19.6918 18.5157 10.7667 6.93311 10.6734 10.1349 25.0077 20.1043 9.10149 10.3998 9.94327 9.18943 22.3419 20.312 63.7666 53.8925 5.73509 4.10443 8.51996 9.79338
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013901Anthrone_oxy
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073453 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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