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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073436 ID=TCONS_00073436|Name=TCONS_00073436|organism=Clytia hemisphaerica|type=transcript|length=2339bp
CTTCAGTGATCTCCTCTGGATCCTGCTCTTCTTGTTTGAAATGTAGTGGC
GGTGTTGGTCGGAAATGGGAAACGTTTCTTGTCCGGGTGTATTGCCCGGA
CGAATCTGTAGCCGTTATCATATTGTGGTTAGTTGCTGTAACTTTGTACT
GTCTGGGTTCGTAAGCTGTTGAAAGTTTATTTTGCTTTCGTTGTTTTAGA
ATGACAGTATCTCCAACTTTGATGTTGTGATCCTTGGCGTTTGTTCGGTT
ATCGAAGTATGTCTTGCGTTGCTGTTTGGCTTGTTCTTGCGTATCTCGTG
CCTGTTGGTTGATTGCTCTCTCTTCGAGTCGTTTTTTCATTGAAGGTATG
GTAAAACTGGTTTCTCTTTGGAACATGACTTGTGCTGGTGAGAGCTTTGT
AGTACAGTGAGGTGTATTTCGGTAGGTGAATAAGAAGTTTTGAAGTTGCT
TTCTCCAGTTGGCTCTTTCAAAATAGGCTGATCGGACGGCCTTCATGAGC
GGCTTCATGAAGTTTTCTGCTTGGGCGTTGGCTTGTGGCCATAAAGGTGT
GATACGTTGATGCTTGATTCGGAGTCTTTTAAAGAATTGCCTAATCTTAT
AAGACTTGAATGGTGGGCCGTTGTCGGAAATGACGGTTTTGGGAATTCCA
AATGTCGAAATAGTTCGTTGTAAGAAGTCAATTAGTTGGTCTGCTGAAGT
TGAGCGTATTGGTTCGACAACTGGGAACTTTGACAATTGATCGATAAGAA
CGATAAGGTAATTTCCGTTTGGTAGCGGCCCGAGGTAATCCAGATTGGTG
GTTTCCCAAACTTCTGTTGGCGTAGGCGTTACTGATAACTTTGCCGGCTG
GGTTGGTTTGGCTTGGACTTGGCAGGCTGCACAGTATTTGATAAGTCGTT
CGATTTTTTCGTCAATGTTTGGGAAGTAGACTTTGGTTCGTAAGAGTGCT
TTGGTTTTCGTGATGCCTAAATGACCGATGTGGGCTAGCTGCATGACCAC
GTTTTCTAGAGTTTCCGGTATGACGATTCTGTTCAAATTTAGTAGCAAAT
CAGATTCAGTGTTAACGGTGAGTTGATTCTTGATGTTTTTGTAAGGCAGT
ACTTTATGCAAGTGTTCCTTGATTTCGGGATAGTTGTGTAACTGTTCTAG
TTTGTACCAGGAGTTGTTTCGTACGAGGTTAGCGACAATCTGTAATGCGG
GgtccttttttgtttcttcgcGAACGTCTTCGAGCGAGATGGCGTTTGGG
CATGCGTTTTCTGCCACGTAGTTGACGTACTGTTCGATTTCGTTGTTGTT
TTCGATGGGACTTCCGATAGGGTGTCTGCTCGGATAGTCTGCAATGTTGT
CTTTGCCTGCGATGTGCTGTAAGTCGAATGTGTATCCTTGTAGACTCAAA
GTCATTTTCTCAATACGTAGCGGTACTATTGAGTTGGGGTTGTTTAATAA
AGTAACGATCGGTTTGTGGTCACAGTACATTTTATATTgtgtaccgtaca
aatacagTTTATTATGTTCACATGCGTATACGATTCCGAGGCATTCTCTT
TCGATTTGGGAGTAGCGCTGTTCTGCAGGGTTCAGGGCACGTGACGAATA
CGATATCAGCTTATGATCTTCTCTTCCCGGTGTGTTTTGTATTATGACAG
CAGAAATTCCAAATGGGCTGGCATCTGTGTAGACGGATGTTTCTTTTTTC
GGATCGTAGTACCCGACGCACGATTCAGATGAAAGACTGTCTCTGAGTGT
TTCGAAAGCTTCCTGGCACTCATCAGTCCAGGTCCACGACGCATGTTTAC
GTAATAGTTGTCGGAGCGGGTGAGTTAACGTACTGTACTGTGGTATGAAG
CGTTTAAAGTAGTTCATAAGTCCCAAAAAGCTCTGGAGTGCTTTGACATC
CTCTGGTATTGGCATGTTTTTGATCTCGTCAAGCTTAGCCGGGTCTGGAT
GCATTCCTTGGTCAGAGAATACGAAACCAAAGAACGTTAaagttttttgg
ctgaaaaggcATTTCGATAGGTTGAGCGTAAGCCCCTTATCTTCGCAACG
TTGTAACAGATTCTGTAATGCGGTATCGTGCTCTTCCTGGGTTGTCCCGA
AAACGATAATGTCATCAATTAAGTTCATTGTCCCTTTAATGTCCTTTATT
GTTTCTCGTAGGGCGTGTTGTAGTTCCTCTTGTGCCGAGTTTACACCAAA
ATTGAGCCTTTTGAAGCGTTTTATCCCGTCTTCGGTTTGGAACGTGGTAA
TGTATCTTGAGTCCTTGTCTAGCTCTAGCTGATGGAATGCACTTGTTAGG
TCGAGCTTCGAAAATACGGTGGAGTCTTTCAGTTTGAAT Run BLAST on NCBI protein sequence of TCONS_00073436-protein >TCONS_00073436-protein ID=TCONS_00073436-protein|Name=TCONS_00073436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=779bp
FKLKDSTVFSKLDLTSAFHQLELDKDSRYITTFQTEDGIKRFKRLNFGVN
SAQEELQHALRETIKDIKGTMNLIDDIIVFGTTQEEHDTALQNLLQRCED
KGLTLNLSKCLFSQKTLTFFGFVFSDQGMHPDPAKLDEIKNMPIPEDVKA
LQSFLGLMNYFKRFIPQYSTLTHPLRQLLRKHASWTWTDECQEAFETLRD
SLSSESCVGYYDPKKETSVYTDASPFGISAVIIQNTPGREDHKLISYSSR
ALNPAEQRYSQIERECLGIVYACEHNKLYLYGTQYKMYCDHKPIVTLLNN
PNSIVPLRIEKMTLSLQGYTFDLQHIAGKDNIADYPSRHPIGSPIENNNE
IEQYVNYVAENACPNAISLEDVREETKKDPALQIVANLVRNNSWYKLEQL
HNYPEIKEHLHKVLPYKNIKNQLTVNTESDLLLNLNRIVIPETLENVVMQ
LAHIGHLGITKTKALLRTKVYFPNIDEKIERLIKYCAACQVQAKPTQPAK
LSVTPTPTEVWETTNLDYLGPLPNGNYLIVLIDQLSKFPVVEPIRSTSAD
QLIDFLQRTISTFGIPKTVISDNGPPFKSYKIRQFFKRLRIKHQRITPLW
PQANAQAENFMKPLMKAVRSAYFERANWRKQLQNFLFTYRNTPHCTTKLS
PAQVMFQRETSFTIPSMKKRLEERAINQQARDTQEQAKQQRKTYFDNRTN
AKDHNIKVGDTVILKQRKQNKLSTAYEPRQYKVTATNHNMITATDSSGQY
TRTRNVSHFRPTPPLHFKQEEQDPEEITE Run BLAST on NCBI transcript from alignment at scaffold_91:435924..438262 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073436 ID=TCONS_00073436|Name=TCONS_00073436|organism=Clytia hemisphaerica|type=transcript|length=2339bp|location=Sequence derived from alignment at scaffold_91:435924..438262 (Clytia hemisphaerica)
ATTCAAACTGAAAGACTCCACCGTATTTTCGAAGCTCGACCTAACAAGTG
CATTCCATCAGCTAGAGCTAGACAAGGACTCAAGATACATTACCACGTTC
CAAACCGAAGACGGGATAAAACGCTTCAAAAGGCTCAATTTTGGTGTAAA
CTCGGCACAAGAGGAACTACAACACGCCCTACGAGAAACAATAAAGGACA
TTAAAGGGACAATGAACTTAATTGATGACATTATCGTTTTCGGGACAACC
CAGGAAGAGCACGATACCGCATTACAGAATCTGTTACAACGTTGCGAAGA
TAAGGGGCTTACGCTCAACCTATCGAAATgccttttcagccaaaaaactt
TAACGTTCTTTGGTTTCGTATTCTCTGACCAAGGAATGCATCCAGACCCG
GCTAAGCTTGACGAGATCAAAAACATGCCAATACCAGAGGATGTCAAAGC
ACTCCAGAGCTTTTTGGGACTTATGAACTACTTTAAACGCTTCATACCAC
AGTACAGTACGTTAACTCACCCGCTCCGACAACTATTACGTAAACATGCG
TCGTGGACCTGGACTGATGAGTGCCAGGAAGCTTTCGAAACACTCAGAGA
CAGTCTTTCATCTGAATCGTGCGTCGGGTACTACGATCCGAAAAAAGAAA
CATCCGTCTACACAGATGCCAGCCCATTTGGAATTTCTGCTGTCATAATA
CAAAACACACCGGGAAGAGAAGATCATAAGCTGATATCGTATTCGTCACG
TGCCCTGAACCCTGCAGAACAGCGCTACTCCCAAATCGAAAGAGAATGCC
TCGGAATCGTATACGCATGTGAACATAATAAActgtatttgtacggtaca
cAATATAAAATGTACTGTGACCACAAACCGATCGTTACTTTATTAAACAA
CCCCAACTCAATAGTACCGCTACGTATTGAGAAAATGACTTTGAGTCTAC
AAGGATACACATTCGACTTACAGCACATCGCAGGCAAAGACAACATTGCA
GACTATCCGAGCAGACACCCTATCGGAAGTCCCATCGAAAACAACAACGA
AATCGAACAGTACGTCAACTACGTGGCAGAAAACGCATGCCCAAACGCCA
TCTCGCTCGAAGACGTTCgcgaagaaacaaaaaaggacCCCGCATTACAG
ATTGTCGCTAACCTCGTACGAAACAACTCCTGGTACAAACTAGAACAGTT
ACACAACTATCCCGAAATCAAGGAACACTTGCATAAAGTACTGCCTTACA
AAAACATCAAGAATCAACTCACCGTTAACACTGAATCTGATTTGCTACTA
AATTTGAACAGAATCGTCATACCGGAAACTCTAGAAAACGTGGTCATGCA
GCTAGCCCACATCGGTCATTTAGGCATCACGAAAACCAAAGCACTCTTAC
GAACCAAAGTCTACTTCCCAAACATTGACGAAAAAATCGAACGACTTATC
AAATACTGTGCAGCCTGCCAAGTCCAAGCCAAACCAACCCAGCCGGCAAA
GTTATCAGTAACGCCTACGCCAACAGAAGTTTGGGAAACCACCAATCTGG
ATTACCTCGGGCCGCTACCAAACGGAAATTACCTTATCGTTCTTATCGAT
CAATTGTCAAAGTTCCCAGTTGTCGAACCAATACGCTCAACTTCAGCAGA
CCAACTAATTGACTTCTTACAACGAACTATTTCGACATTTGGAATTCCCA
AAACCGTCATTTCCGACAACGGCCCACCATTCAAGTCTTATAAGATTAGG
CAATTCTTTAAAAGACTCCGAATCAAGCATCAACGTATCACACCTTTATG
GCCACAAGCCAACGCCCAAGCAGAAAACTTCATGAAGCCGCTCATGAAGG
CCGTCCGATCAGCCTATTTTGAAAGAGCCAACTGGAGAAAGCAACTTCAA
AACTTCTTATTCACCTACCGAAATACACCTCACTGTACTACAAAGCTCTC
ACCAGCACAAGTCATGTTCCAAAGAGAAACCAGTTTTACCATACCTTCAA
TGAAAAAACGACTCGAAGAGAGAGCAATCAACCAACAGGCACGAGATACG
CAAGAACAAGCCAAACAGCAACGCAAGACATACTTCGATAACCGAACAAA
CGCCAAGGATCACAACATCAAAGTTGGAGATACTGTCATTCTAAAACAAC
GAAAGCAAAATAAACTTTCAACAGCTTACGAACCCAGACAGTACAAAGTT
ACAGCAACTAACCACAATATGATAACGGCTACAGATTCGTCCGGGCAATA
CACCCGGACAAGAAACGTTTCCCATTTCCGACCAACACCGCCACTACATT
TCAAACAAGAAGAGCAGGATCCAGAGGAGATCACTGAAG Coding sequence (CDS) from alignment at scaffold_91:435924..438262 >TCONS_00073436 ID=TCONS_00073436|Name=TCONS_00073436|organism=Clytia hemisphaerica|type=CDS|length=2337bp|location=Sequence derived from alignment at scaffold_91:435924..438262 (Clytia hemisphaerica)
TTCAAACTGAAAGACTCCACCGTATTTTCGAAGCTCGACCTAACAAGTGC
ATTCCATCAGCTAGAGCTAGACAAGGACTCAAGATACATTACCACGTTCC
AAACCGAAGACGGGATAAAACGCTTCAAAAGGCTCAATTTTGGTGTAAAC
TCGGCACAAGAGGAACTACAACACGCCCTACGAGAAACAATAAAGGACAT
TAAAGGGACAATGAACTTAATTGATGACATTATCGTTTTCGGGACAACCC
AGGAAGAGCACGATACCGCATTACAGAATCTGTTACAACGTTGCGAAGAT
AAGGGGCTTACGCTCAACCTATCGAAATgccttttcagccaaaaaacttT
AACGTTCTTTGGTTTCGTATTCTCTGACCAAGGAATGCATCCAGACCCGG
CTAAGCTTGACGAGATCAAAAACATGCCAATACCAGAGGATGTCAAAGCA
CTCCAGAGCTTTTTGGGACTTATGAACTACTTTAAACGCTTCATACCACA
GTACAGTACGTTAACTCACCCGCTCCGACAACTATTACGTAAACATGCGT
CGTGGACCTGGACTGATGAGTGCCAGGAAGCTTTCGAAACACTCAGAGAC
AGTCTTTCATCTGAATCGTGCGTCGGGTACTACGATCCGAAAAAAGAAAC
ATCCGTCTACACAGATGCCAGCCCATTTGGAATTTCTGCTGTCATAATAC
AAAACACACCGGGAAGAGAAGATCATAAGCTGATATCGTATTCGTCACGT
GCCCTGAACCCTGCAGAACAGCGCTACTCCCAAATCGAAAGAGAATGCCT
CGGAATCGTATACGCATGTGAACATAATAAActgtatttgtacggtacac
AATATAAAATGTACTGTGACCACAAACCGATCGTTACTTTATTAAACAAC
CCCAACTCAATAGTACCGCTACGTATTGAGAAAATGACTTTGAGTCTACA
AGGATACACATTCGACTTACAGCACATCGCAGGCAAAGACAACATTGCAG
ACTATCCGAGCAGACACCCTATCGGAAGTCCCATCGAAAACAACAACGAA
ATCGAACAGTACGTCAACTACGTGGCAGAAAACGCATGCCCAAACGCCAT
CTCGCTCGAAGACGTTCgcgaagaaacaaaaaaggacCCCGCATTACAGA
TTGTCGCTAACCTCGTACGAAACAACTCCTGGTACAAACTAGAACAGTTA
CACAACTATCCCGAAATCAAGGAACACTTGCATAAAGTACTGCCTTACAA
AAACATCAAGAATCAACTCACCGTTAACACTGAATCTGATTTGCTACTAA
ATTTGAACAGAATCGTCATACCGGAAACTCTAGAAAACGTGGTCATGCAG
CTAGCCCACATCGGTCATTTAGGCATCACGAAAACCAAAGCACTCTTACG
AACCAAAGTCTACTTCCCAAACATTGACGAAAAAATCGAACGACTTATCA
AATACTGTGCAGCCTGCCAAGTCCAAGCCAAACCAACCCAGCCGGCAAAG
TTATCAGTAACGCCTACGCCAACAGAAGTTTGGGAAACCACCAATCTGGA
TTACCTCGGGCCGCTACCAAACGGAAATTACCTTATCGTTCTTATCGATC
AATTGTCAAAGTTCCCAGTTGTCGAACCAATACGCTCAACTTCAGCAGAC
CAACTAATTGACTTCTTACAACGAACTATTTCGACATTTGGAATTCCCAA
AACCGTCATTTCCGACAACGGCCCACCATTCAAGTCTTATAAGATTAGGC
AATTCTTTAAAAGACTCCGAATCAAGCATCAACGTATCACACCTTTATGG
CCACAAGCCAACGCCCAAGCAGAAAACTTCATGAAGCCGCTCATGAAGGC
CGTCCGATCAGCCTATTTTGAAAGAGCCAACTGGAGAAAGCAACTTCAAA
ACTTCTTATTCACCTACCGAAATACACCTCACTGTACTACAAAGCTCTCA
CCAGCACAAGTCATGTTCCAAAGAGAAACCAGTTTTACCATACCTTCAAT
GAAAAAACGACTCGAAGAGAGAGCAATCAACCAACAGGCACGAGATACGC
AAGAACAAGCCAAACAGCAACGCAAGACATACTTCGATAACCGAACAAAC
GCCAAGGATCACAACATCAAAGTTGGAGATACTGTCATTCTAAAACAACG
AAAGCAAAATAAACTTTCAACAGCTTACGAACCCAGACAGTACAAAGTTA
CAGCAACTAACCACAATATGATAACGGCTACAGATTCGTCCGGGCAATAC
ACCCGGACAAGAAACGTTTCCCATTTCCGACCAACACCGCCACTACATTT
CAAACAAGAAGAGCAGGATCCAGAGGAGATCACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073436-exon-scaffold_91-1491911889:435924..438262 | TCONS_00073436-exon-scaffold_91-1491911889:435924..438262 | Clytia hemisphaerica | exon |
| TCONS_00073436-exon-scaffold_91-1510915933:435924..438262 | TCONS_00073436-exon-scaffold_91-1510915933:435924..438262 | Clytia hemisphaerica | exon |
| TCONS_00073436-exon-scaffold_91-1575043694:435924..438262 | TCONS_00073436-exon-scaffold_91-1575043694:435924..438262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_91 | supercontig | scaffold_91:435924..438262 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00073436 vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 2.283e-17 Identity = 72/291 (24.74%), Postives = 136/291 (46.74%), Query Frame = -2
Query: 1331 QHALRETIKDIKG--TMNLIDDIIVFGTTQEEHDTALQNLLQRCEDKGLTLNLSKCLFSQKTLTFFGFVFSDQGMHPDPAKLDEIKNMPIPEDVKALQSFLGLMNYFKRFIPQYSTLTHPL-RQLLRKHASWTWTDECQEAFETLRDSLSSESCVGYYDPKKETSVYTDASPFGISAVIIQNTPGREDHKLISYSSRALNPAEQRYSQIERECLGIVYACEHNKLYLYGTQYKMYCDHKPIVTLLNNPNSIVPLRIEKMTLSLQG--------YTFDLQHIAGKDNIADYP 2170
Q+ + +KD+ G ++ +++++ +QEEH ++ +L R + +L K F ++T+ F GFV + +G+ + + I P P +L++F+ + ++ F+ ++S + PL RQLL + + W E QEAFE L+ + + + P+ + T + + A +IQ ++ SR ++P E YSQ E + L I A YL T+ +PI+ LLN + L +++T+ L G + FD+ + +D P
Sbjct: 713 QNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSY-QFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTE-------EPIMILLNT-EDLASLNNDRLTVLLPGHWVFFFSHFNFDVMELPEQDGGRALP 994
The following BLAST results are available for this feature:
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