TCONS_00073436-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073436-protein
Unique NameTCONS_00073436-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length779

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073436-protein ID=TCONS_00073436-protein|Name=TCONS_00073436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=779bp
FKLKDSTVFSKLDLTSAFHQLELDKDSRYITTFQTEDGIKRFKRLNFGVN
SAQEELQHALRETIKDIKGTMNLIDDIIVFGTTQEEHDTALQNLLQRCED
KGLTLNLSKCLFSQKTLTFFGFVFSDQGMHPDPAKLDEIKNMPIPEDVKA
LQSFLGLMNYFKRFIPQYSTLTHPLRQLLRKHASWTWTDECQEAFETLRD
SLSSESCVGYYDPKKETSVYTDASPFGISAVIIQNTPGREDHKLISYSSR
ALNPAEQRYSQIERECLGIVYACEHNKLYLYGTQYKMYCDHKPIVTLLNN
PNSIVPLRIEKMTLSLQGYTFDLQHIAGKDNIADYPSRHPIGSPIENNNE
IEQYVNYVAENACPNAISLEDVREETKKDPALQIVANLVRNNSWYKLEQL
HNYPEIKEHLHKVLPYKNIKNQLTVNTESDLLLNLNRIVIPETLENVVMQ
LAHIGHLGITKTKALLRTKVYFPNIDEKIERLIKYCAACQVQAKPTQPAK
LSVTPTPTEVWETTNLDYLGPLPNGNYLIVLIDQLSKFPVVEPIRSTSAD
QLIDFLQRTISTFGIPKTVISDNGPPFKSYKIRQFFKRLRIKHQRITPLW
PQANAQAENFMKPLMKAVRSAYFERANWRKQLQNFLFTYRNTPHCTTKLS
PAQVMFQRETSFTIPSMKKRLEERAINQQARDTQEQAKQQRKTYFDNRTN
AKDHNIKVGDTVILKQRKQNKLSTAYEPRQYKVTATNHNMITATDSSGQY
TRTRNVSHFRPTPPLHFKQEEQDPEEITE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045580XLOC_045580Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073436TCONS_00073436Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR000477RT_dom
IPR012337RNaseH-like_dom
IPR015416Znf_H2C2_histone_UAS-bd
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 507..616
e-value: 5.5E-18
score: 65.2
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 503..659
score: 23.332
NoneNo IPR availableGENE3D3.30.70.270coord: 42..129
e-value: 3.6E-19
score: 68.3
NoneNo IPR availableGENE3D3.30.70.270coord: 130..258
e-value: 3.9E-38
score: 129.7
NoneNo IPR availableGENE3D3.10.10.10coord: 1..41
e-value: 3.6E-6
score: 26.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 758..779
NoneNo IPR availableCDDcd01647RT_LTRcoord: 2..123
e-value: 4.63907E-33
score: 125.015
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 219..340
e-value: 1.64209E-39
score: 141.476
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 3..325
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 2..123
e-value: 4.3E-13
score: 49.2
IPR000477Reverse transcriptase domainPROSITEPS50878RT_POLcoord: 1..124
score: 11.909
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 499..699
e-value: 2.1E-41
score: 141.2
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 511..663
IPR015416Zinc finger, H2C2-type, histone UAS bindingPFAMPF09337zf-H2C2coord: 456..490
e-value: 5.4E-10
score: 39.3

Blast
[Close]
BLAST of TCONS_00073436-protein vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.011e-17
Identity = 71/286 (24.83%), Postives = 135/286 (47.20%), Query Frame = 0 
Query:   57 QHALRETIKDIKG--TMNLIDDIIVFGTTQEEHDTALQNLLQRCEDKGLTLNLSKCLFSQKTLTFFGFVFSDQGMHPDPAKLDEIKNMPIPEDVKALQSFLGLMNYFKRFIPQYSTLTHPL-RQLLRKHASWTWTDECQEAFETLRDSLSSESCVGYYDPKKETSVYTDASPFGISAVIIQNTPGREDHKLISYSSRALNPAEQRYSQIERECLGIVYACEHNKLYLYGTQYKMYCDHKPIVTLLNNPNSIVPLRIEKMTLSLQG--------YTFDLQHIAGKDN 331
            Q+ +   +KD+ G   ++   +++++  +QEEH   ++ +L R     +  +L K  F ++T+ F GFV + +G+  +   +  I   P P    +L++F+  +  ++ F+ ++S +  PL RQLL  +  + W  E QEAFE L+ +      + +  P+    + T  +   + A +IQ           ++ SR ++P E  YSQ E + L I  A      YL  T+       +PI+ LLN    +  L  +++T+ L G        + FD+  +  +D 
Sbjct:  713 QNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSY-QFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTE-------EPIMILLNT-EDLASLNNDRLTVLLPGHWVFFFSHFNFDVMELPEQDG 989
The following BLAST results are available for this feature:
BLAST of TCONS_00073436-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL11.011e-1724.83Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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