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TCONS_00073436 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073436
Unique NameTCONS_00073436
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073436 ID=TCONS_00073436|Name=TCONS_00073436|organism=Clytia hemisphaerica|type=transcript|length=2339bp
CTTCAGTGATCTCCTCTGGATCCTGCTCTTCTTGTTTGAAATGTAGTGGC
GGTGTTGGTCGGAAATGGGAAACGTTTCTTGTCCGGGTGTATTGCCCGGA
CGAATCTGTAGCCGTTATCATATTGTGGTTAGTTGCTGTAACTTTGTACT
GTCTGGGTTCGTAAGCTGTTGAAAGTTTATTTTGCTTTCGTTGTTTTAGA
ATGACAGTATCTCCAACTTTGATGTTGTGATCCTTGGCGTTTGTTCGGTT
ATCGAAGTATGTCTTGCGTTGCTGTTTGGCTTGTTCTTGCGTATCTCGTG
CCTGTTGGTTGATTGCTCTCTCTTCGAGTCGTTTTTTCATTGAAGGTATG
GTAAAACTGGTTTCTCTTTGGAACATGACTTGTGCTGGTGAGAGCTTTGT
AGTACAGTGAGGTGTATTTCGGTAGGTGAATAAGAAGTTTTGAAGTTGCT
TTCTCCAGTTGGCTCTTTCAAAATAGGCTGATCGGACGGCCTTCATGAGC
GGCTTCATGAAGTTTTCTGCTTGGGCGTTGGCTTGTGGCCATAAAGGTGT
GATACGTTGATGCTTGATTCGGAGTCTTTTAAAGAATTGCCTAATCTTAT
AAGACTTGAATGGTGGGCCGTTGTCGGAAATGACGGTTTTGGGAATTCCA
AATGTCGAAATAGTTCGTTGTAAGAAGTCAATTAGTTGGTCTGCTGAAGT
TGAGCGTATTGGTTCGACAACTGGGAACTTTGACAATTGATCGATAAGAA
CGATAAGGTAATTTCCGTTTGGTAGCGGCCCGAGGTAATCCAGATTGGTG
GTTTCCCAAACTTCTGTTGGCGTAGGCGTTACTGATAACTTTGCCGGCTG
GGTTGGTTTGGCTTGGACTTGGCAGGCTGCACAGTATTTGATAAGTCGTT
CGATTTTTTCGTCAATGTTTGGGAAGTAGACTTTGGTTCGTAAGAGTGCT
TTGGTTTTCGTGATGCCTAAATGACCGATGTGGGCTAGCTGCATGACCAC
GTTTTCTAGAGTTTCCGGTATGACGATTCTGTTCAAATTTAGTAGCAAAT
CAGATTCAGTGTTAACGGTGAGTTGATTCTTGATGTTTTTGTAAGGCAGT
ACTTTATGCAAGTGTTCCTTGATTTCGGGATAGTTGTGTAACTGTTCTAG
TTTGTACCAGGAGTTGTTTCGTACGAGGTTAGCGACAATCTGTAATGCGG
GgtccttttttgtttcttcgcGAACGTCTTCGAGCGAGATGGCGTTTGGG
CATGCGTTTTCTGCCACGTAGTTGACGTACTGTTCGATTTCGTTGTTGTT
TTCGATGGGACTTCCGATAGGGTGTCTGCTCGGATAGTCTGCAATGTTGT
CTTTGCCTGCGATGTGCTGTAAGTCGAATGTGTATCCTTGTAGACTCAAA
GTCATTTTCTCAATACGTAGCGGTACTATTGAGTTGGGGTTGTTTAATAA
AGTAACGATCGGTTTGTGGTCACAGTACATTTTATATTgtgtaccgtaca
aatacagTTTATTATGTTCACATGCGTATACGATTCCGAGGCATTCTCTT
TCGATTTGGGAGTAGCGCTGTTCTGCAGGGTTCAGGGCACGTGACGAATA
CGATATCAGCTTATGATCTTCTCTTCCCGGTGTGTTTTGTATTATGACAG
CAGAAATTCCAAATGGGCTGGCATCTGTGTAGACGGATGTTTCTTTTTTC
GGATCGTAGTACCCGACGCACGATTCAGATGAAAGACTGTCTCTGAGTGT
TTCGAAAGCTTCCTGGCACTCATCAGTCCAGGTCCACGACGCATGTTTAC
GTAATAGTTGTCGGAGCGGGTGAGTTAACGTACTGTACTGTGGTATGAAG
CGTTTAAAGTAGTTCATAAGTCCCAAAAAGCTCTGGAGTGCTTTGACATC
CTCTGGTATTGGCATGTTTTTGATCTCGTCAAGCTTAGCCGGGTCTGGAT
GCATTCCTTGGTCAGAGAATACGAAACCAAAGAACGTTAaagttttttgg
ctgaaaaggcATTTCGATAGGTTGAGCGTAAGCCCCTTATCTTCGCAACG
TTGTAACAGATTCTGTAATGCGGTATCGTGCTCTTCCTGGGTTGTCCCGA
AAACGATAATGTCATCAATTAAGTTCATTGTCCCTTTAATGTCCTTTATT
GTTTCTCGTAGGGCGTGTTGTAGTTCCTCTTGTGCCGAGTTTACACCAAA
ATTGAGCCTTTTGAAGCGTTTTATCCCGTCTTCGGTTTGGAACGTGGTAA
TGTATCTTGAGTCCTTGTCTAGCTCTAGCTGATGGAATGCACTTGTTAGG
TCGAGCTTCGAAAATACGGTGGAGTCTTTCAGTTTGAAT
Run BLAST on NCBI

protein sequence of TCONS_00073436-protein

>TCONS_00073436-protein ID=TCONS_00073436-protein|Name=TCONS_00073436-protein|organism=Clytia hemisphaerica|type=polypeptide|length=779bp
FKLKDSTVFSKLDLTSAFHQLELDKDSRYITTFQTEDGIKRFKRLNFGVN
SAQEELQHALRETIKDIKGTMNLIDDIIVFGTTQEEHDTALQNLLQRCED
KGLTLNLSKCLFSQKTLTFFGFVFSDQGMHPDPAKLDEIKNMPIPEDVKA
LQSFLGLMNYFKRFIPQYSTLTHPLRQLLRKHASWTWTDECQEAFETLRD
SLSSESCVGYYDPKKETSVYTDASPFGISAVIIQNTPGREDHKLISYSSR
ALNPAEQRYSQIERECLGIVYACEHNKLYLYGTQYKMYCDHKPIVTLLNN
PNSIVPLRIEKMTLSLQGYTFDLQHIAGKDNIADYPSRHPIGSPIENNNE
IEQYVNYVAENACPNAISLEDVREETKKDPALQIVANLVRNNSWYKLEQL
HNYPEIKEHLHKVLPYKNIKNQLTVNTESDLLLNLNRIVIPETLENVVMQ
LAHIGHLGITKTKALLRTKVYFPNIDEKIERLIKYCAACQVQAKPTQPAK
LSVTPTPTEVWETTNLDYLGPLPNGNYLIVLIDQLSKFPVVEPIRSTSAD
QLIDFLQRTISTFGIPKTVISDNGPPFKSYKIRQFFKRLRIKHQRITPLW
PQANAQAENFMKPLMKAVRSAYFERANWRKQLQNFLFTYRNTPHCTTKLS
PAQVMFQRETSFTIPSMKKRLEERAINQQARDTQEQAKQQRKTYFDNRTN
AKDHNIKVGDTVILKQRKQNKLSTAYEPRQYKVTATNHNMITATDSSGQY
TRTRNVSHFRPTPPLHFKQEEQDPEEITE
Run BLAST on NCBI

transcript from alignment at scaffold_91:435924..438262

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073436 ID=TCONS_00073436|Name=TCONS_00073436|organism=Clytia hemisphaerica|type=transcript|length=2339bp|location=Sequence derived from alignment at scaffold_91:435924..438262 (Clytia hemisphaerica)
ATTCAAACTGAAAGACTCCACCGTATTTTCGAAGCTCGACCTAACAAGTG CATTCCATCAGCTAGAGCTAGACAAGGACTCAAGATACATTACCACGTTC CAAACCGAAGACGGGATAAAACGCTTCAAAAGGCTCAATTTTGGTGTAAA CTCGGCACAAGAGGAACTACAACACGCCCTACGAGAAACAATAAAGGACA TTAAAGGGACAATGAACTTAATTGATGACATTATCGTTTTCGGGACAACC CAGGAAGAGCACGATACCGCATTACAGAATCTGTTACAACGTTGCGAAGA TAAGGGGCTTACGCTCAACCTATCGAAATgccttttcagccaaaaaactt TAACGTTCTTTGGTTTCGTATTCTCTGACCAAGGAATGCATCCAGACCCG GCTAAGCTTGACGAGATCAAAAACATGCCAATACCAGAGGATGTCAAAGC ACTCCAGAGCTTTTTGGGACTTATGAACTACTTTAAACGCTTCATACCAC AGTACAGTACGTTAACTCACCCGCTCCGACAACTATTACGTAAACATGCG TCGTGGACCTGGACTGATGAGTGCCAGGAAGCTTTCGAAACACTCAGAGA CAGTCTTTCATCTGAATCGTGCGTCGGGTACTACGATCCGAAAAAAGAAA CATCCGTCTACACAGATGCCAGCCCATTTGGAATTTCTGCTGTCATAATA CAAAACACACCGGGAAGAGAAGATCATAAGCTGATATCGTATTCGTCACG TGCCCTGAACCCTGCAGAACAGCGCTACTCCCAAATCGAAAGAGAATGCC TCGGAATCGTATACGCATGTGAACATAATAAActgtatttgtacggtaca cAATATAAAATGTACTGTGACCACAAACCGATCGTTACTTTATTAAACAA CCCCAACTCAATAGTACCGCTACGTATTGAGAAAATGACTTTGAGTCTAC AAGGATACACATTCGACTTACAGCACATCGCAGGCAAAGACAACATTGCA GACTATCCGAGCAGACACCCTATCGGAAGTCCCATCGAAAACAACAACGA AATCGAACAGTACGTCAACTACGTGGCAGAAAACGCATGCCCAAACGCCA TCTCGCTCGAAGACGTTCgcgaagaaacaaaaaaggacCCCGCATTACAG ATTGTCGCTAACCTCGTACGAAACAACTCCTGGTACAAACTAGAACAGTT ACACAACTATCCCGAAATCAAGGAACACTTGCATAAAGTACTGCCTTACA AAAACATCAAGAATCAACTCACCGTTAACACTGAATCTGATTTGCTACTA AATTTGAACAGAATCGTCATACCGGAAACTCTAGAAAACGTGGTCATGCA GCTAGCCCACATCGGTCATTTAGGCATCACGAAAACCAAAGCACTCTTAC GAACCAAAGTCTACTTCCCAAACATTGACGAAAAAATCGAACGACTTATC AAATACTGTGCAGCCTGCCAAGTCCAAGCCAAACCAACCCAGCCGGCAAA GTTATCAGTAACGCCTACGCCAACAGAAGTTTGGGAAACCACCAATCTGG ATTACCTCGGGCCGCTACCAAACGGAAATTACCTTATCGTTCTTATCGAT CAATTGTCAAAGTTCCCAGTTGTCGAACCAATACGCTCAACTTCAGCAGA CCAACTAATTGACTTCTTACAACGAACTATTTCGACATTTGGAATTCCCA AAACCGTCATTTCCGACAACGGCCCACCATTCAAGTCTTATAAGATTAGG CAATTCTTTAAAAGACTCCGAATCAAGCATCAACGTATCACACCTTTATG GCCACAAGCCAACGCCCAAGCAGAAAACTTCATGAAGCCGCTCATGAAGG CCGTCCGATCAGCCTATTTTGAAAGAGCCAACTGGAGAAAGCAACTTCAA AACTTCTTATTCACCTACCGAAATACACCTCACTGTACTACAAAGCTCTC ACCAGCACAAGTCATGTTCCAAAGAGAAACCAGTTTTACCATACCTTCAA TGAAAAAACGACTCGAAGAGAGAGCAATCAACCAACAGGCACGAGATACG CAAGAACAAGCCAAACAGCAACGCAAGACATACTTCGATAACCGAACAAA CGCCAAGGATCACAACATCAAAGTTGGAGATACTGTCATTCTAAAACAAC GAAAGCAAAATAAACTTTCAACAGCTTACGAACCCAGACAGTACAAAGTT ACAGCAACTAACCACAATATGATAACGGCTACAGATTCGTCCGGGCAATA CACCCGGACAAGAAACGTTTCCCATTTCCGACCAACACCGCCACTACATT TCAAACAAGAAGAGCAGGATCCAGAGGAGATCACTGAAG

Coding sequence (CDS) from alignment at scaffold_91:435924..438262

>TCONS_00073436 ID=TCONS_00073436|Name=TCONS_00073436|organism=Clytia hemisphaerica|type=CDS|length=2337bp|location=Sequence derived from alignment at scaffold_91:435924..438262 (Clytia hemisphaerica)
TTCAAACTGAAAGACTCCACCGTATTTTCGAAGCTCGACCTAACAAGTGC
ATTCCATCAGCTAGAGCTAGACAAGGACTCAAGATACATTACCACGTTCC
AAACCGAAGACGGGATAAAACGCTTCAAAAGGCTCAATTTTGGTGTAAAC
TCGGCACAAGAGGAACTACAACACGCCCTACGAGAAACAATAAAGGACAT
TAAAGGGACAATGAACTTAATTGATGACATTATCGTTTTCGGGACAACCC
AGGAAGAGCACGATACCGCATTACAGAATCTGTTACAACGTTGCGAAGAT
AAGGGGCTTACGCTCAACCTATCGAAATgccttttcagccaaaaaacttT
AACGTTCTTTGGTTTCGTATTCTCTGACCAAGGAATGCATCCAGACCCGG
CTAAGCTTGACGAGATCAAAAACATGCCAATACCAGAGGATGTCAAAGCA
CTCCAGAGCTTTTTGGGACTTATGAACTACTTTAAACGCTTCATACCACA
GTACAGTACGTTAACTCACCCGCTCCGACAACTATTACGTAAACATGCGT
CGTGGACCTGGACTGATGAGTGCCAGGAAGCTTTCGAAACACTCAGAGAC
AGTCTTTCATCTGAATCGTGCGTCGGGTACTACGATCCGAAAAAAGAAAC
ATCCGTCTACACAGATGCCAGCCCATTTGGAATTTCTGCTGTCATAATAC
AAAACACACCGGGAAGAGAAGATCATAAGCTGATATCGTATTCGTCACGT
GCCCTGAACCCTGCAGAACAGCGCTACTCCCAAATCGAAAGAGAATGCCT
CGGAATCGTATACGCATGTGAACATAATAAActgtatttgtacggtacac
AATATAAAATGTACTGTGACCACAAACCGATCGTTACTTTATTAAACAAC
CCCAACTCAATAGTACCGCTACGTATTGAGAAAATGACTTTGAGTCTACA
AGGATACACATTCGACTTACAGCACATCGCAGGCAAAGACAACATTGCAG
ACTATCCGAGCAGACACCCTATCGGAAGTCCCATCGAAAACAACAACGAA
ATCGAACAGTACGTCAACTACGTGGCAGAAAACGCATGCCCAAACGCCAT
CTCGCTCGAAGACGTTCgcgaagaaacaaaaaaggacCCCGCATTACAGA
TTGTCGCTAACCTCGTACGAAACAACTCCTGGTACAAACTAGAACAGTTA
CACAACTATCCCGAAATCAAGGAACACTTGCATAAAGTACTGCCTTACAA
AAACATCAAGAATCAACTCACCGTTAACACTGAATCTGATTTGCTACTAA
ATTTGAACAGAATCGTCATACCGGAAACTCTAGAAAACGTGGTCATGCAG
CTAGCCCACATCGGTCATTTAGGCATCACGAAAACCAAAGCACTCTTACG
AACCAAAGTCTACTTCCCAAACATTGACGAAAAAATCGAACGACTTATCA
AATACTGTGCAGCCTGCCAAGTCCAAGCCAAACCAACCCAGCCGGCAAAG
TTATCAGTAACGCCTACGCCAACAGAAGTTTGGGAAACCACCAATCTGGA
TTACCTCGGGCCGCTACCAAACGGAAATTACCTTATCGTTCTTATCGATC
AATTGTCAAAGTTCCCAGTTGTCGAACCAATACGCTCAACTTCAGCAGAC
CAACTAATTGACTTCTTACAACGAACTATTTCGACATTTGGAATTCCCAA
AACCGTCATTTCCGACAACGGCCCACCATTCAAGTCTTATAAGATTAGGC
AATTCTTTAAAAGACTCCGAATCAAGCATCAACGTATCACACCTTTATGG
CCACAAGCCAACGCCCAAGCAGAAAACTTCATGAAGCCGCTCATGAAGGC
CGTCCGATCAGCCTATTTTGAAAGAGCCAACTGGAGAAAGCAACTTCAAA
ACTTCTTATTCACCTACCGAAATACACCTCACTGTACTACAAAGCTCTCA
CCAGCACAAGTCATGTTCCAAAGAGAAACCAGTTTTACCATACCTTCAAT
GAAAAAACGACTCGAAGAGAGAGCAATCAACCAACAGGCACGAGATACGC
AAGAACAAGCCAAACAGCAACGCAAGACATACTTCGATAACCGAACAAAC
GCCAAGGATCACAACATCAAAGTTGGAGATACTGTCATTCTAAAACAACG
AAAGCAAAATAAACTTTCAACAGCTTACGAACCCAGACAGTACAAAGTTA
CAGCAACTAACCACAATATGATAACGGCTACAGATTCGTCCGGGCAATAC
ACCCGGACAAGAAACGTTTCCCATTTCCGACCAACACCGCCACTACATTT
CAAACAAGAAGAGCAGGATCCAGAGGAGATCACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045580XLOC_045580Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073436-proteinTCONS_00073436-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073436-exon-scaffold_91-1491911889:435924..438262TCONS_00073436-exon-scaffold_91-1491911889:435924..438262Clytia hemisphaericaexon
TCONS_00073436-exon-scaffold_91-1510915933:435924..438262TCONS_00073436-exon-scaffold_91-1510915933:435924..438262Clytia hemisphaericaexon
TCONS_00073436-exon-scaffold_91-1575043694:435924..438262TCONS_00073436-exon-scaffold_91-1575043694:435924..438262Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:435924..438262 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.339529 0.526918 0.898631 1.10472 0.24708 0.286571 0.66384 0.781861 0.954439 0.824865 1.215 1.3136 0.781122 1.24871 0.888734 0.859861 1.3951 1.38412 0.964065 0.934959 0.880057 0.675569 0.484666 0.458264 1.62736 1.91522 0.576503 0.742549 0.44369 0.282531
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR000477RT_dom
IPR012337RNaseH-like_dom
IPR015416Znf_H2C2_histone_UAS-bd
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00073436 vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 2.283e-17
Identity = 72/291 (24.74%), Postives = 136/291 (46.74%), Query Frame = -2
Query: 1331 QHALRETIKDIKG--TMNLIDDIIVFGTTQEEHDTALQNLLQRCEDKGLTLNLSKCLFSQKTLTFFGFVFSDQGMHPDPAKLDEIKNMPIPEDVKALQSFLGLMNYFKRFIPQYSTLTHPL-RQLLRKHASWTWTDECQEAFETLRDSLSSESCVGYYDPKKETSVYTDASPFGISAVIIQNTPGREDHKLISYSSRALNPAEQRYSQIERECLGIVYACEHNKLYLYGTQYKMYCDHKPIVTLLNNPNSIVPLRIEKMTLSLQG--------YTFDLQHIAGKDNIADYP 2170
            Q+ +   +KD+ G   ++   +++++  +QEEH   ++ +L R     +  +L K  F ++T+ F GFV + +G+  +   +  I   P P    +L++F+  +  ++ F+ ++S +  PL RQLL  +  + W  E QEAFE L+ +      + +  P+    + T  +   + A +IQ           ++ SR ++P E  YSQ E + L I  A      YL  T+       +PI+ LLN    +  L  +++T+ L G        + FD+  +  +D     P
Sbjct:  713 QNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSY-QFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAAFMVWCRYLENTE-------EPIMILLNT-EDLASLNNDRLTVLLPGHWVFFFSHFNFDVMELPEQDGGRALP 994          
The following BLAST results are available for this feature:
BLAST of TCONS_00073436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RTL12.283e-1724.74Retrotransposon-like protein 1 OS=Homo sapiens GN=... [more]
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