Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073390 ID=TCONS_00073390|Name=TCONS_00073390|organism=Clytia hemisphaerica|type=transcript|length=1431bpRun BLAST on NCBI protein sequence of TCONS_00073390-protein >TCONS_00073390-protein ID=TCONS_00073390-protein|Name=TCONS_00073390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp MVLELQPVILAGGEGSKLFPLTDTIPKCLLPVGNKPMIWYPVQFLEKYGFRun BLAST on NCBI transcript from alignment at scaffold_91:255692..269355+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073390 ID=TCONS_00073390|Name=TCONS_00073390|organism=Clytia hemisphaerica|type=transcript|length=13664bp|location=Sequence derived from alignment at scaffold_91:255692..269355+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_91:255692..269355+ >TCONS_00073390 ID=TCONS_00073390|Name=TCONS_00073390|organism=Clytia hemisphaerica|type=CDS|length=11205bp|location=Sequence derived from alignment at scaffold_91:255692..269355+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073390 vs. Swiss-Prot (Human)
Match: EI2BG (Translation initiation factor eIF-2B subunit gamma OS=Homo sapiens GN=EIF2B3 PE=1 SV=1) HSP 1 Score: 273.092 bits (697), Expect = 2.676e-85 Identity = 152/420 (36.19%), Postives = 241/420 (57.38%), Query Frame = 1 Query: 157 LELQPVILAGGEGSKLFPLTDTIPKCLLPVGNKPMIWYPVQFLEKYGFQDFMVIVRKASAEKIHEALRTHCQESSKFQMICIDDDEDIGTAEAMVLIKDKTKTDLLVVSSDMVTDLALHRLVDTYRTYDATLCAVMAKRVDVHPQVEQTKSNKKSKITDPNVGTRDIVSIDPKENRLLFLSNEADLEQETISFTKSLLKKYPKMKIQSSLVDAHLYIIKNWLLSYLAQKPKYESLKSDFIPHVIHKQFSKPKVQSQQIQDSILEEENEGGEKTDKSAKDIFSF---ATADELVTMTKEWSGYQGNCLKD----PIKCYAYV-SDDFCLRVNTLPAYTYINRQIVKMKDTLAPNTSYIRLPPSVVQGGKTQIGNDCIIGDSASFGTNVTIKKSMVGKSCIIGSNVRITNSIIMNHVTIADG 1392 +E Q V++A G GS++ LT +IPK LLPVGNKP+IWYP+ LE+ GF++ +V+ + + +AL + K ++CI DD D+GTA+++ I K KTD+LV+S D++TD+ALH +VD +R YDA+L +M K D V K KK+ V RD + +D RLLF++NEADL++E + S+L+K+P+++ + LVDAHLY +K +++ +L + S++S+ IP+++ KQFS Q Q + +K + + DI+SF A L W+ +G+ +D ++CY ++ + C RV+TL Y NRQ+ K+ L P + +V K +G D +IG G +IK+S++G SC+I V ITN ++MN VT+ +G Sbjct: 1 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVV----TTRDVQKALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDLFRAYDASLAMLMRKGQDSIEPVPGQKGKKKA------VEQRDFIGVDSTGKRLLFMANEADLDEELV-IKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSASSQQGQEEKEEDL------KKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRCYVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVS--KHLVGVDSLIGPETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEG 401 The following BLAST results are available for this feature:
BLAST of TCONS_00073390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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