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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073363 ID=TCONS_00073363|Name=TCONS_00073363|organism=Clytia hemisphaerica|type=transcript|length=1421bp
GTTAGTTCTTGCGCGTGCGATGTTTCCATTTATATTGTATTATATTATTG
TCGTATACTATTTAAACGATTCTGGTGGCATCATTCCTTAATCATTTTCA
TTCCAAACGTCGAAATGGAATCACCTACAAGATCAATCACGCCCTCTTGT
ACGCCACCGCCATCTCTAGCGACGTTGAAGCGCCCTGACAGTTGTTACTC
AAGTGGTGGCGAGACGCCACCTTCAACTGATAGACATTGCAGTCCAACTT
TCTTCACAACAGATGACCAAGACGTCACTTTGGTTTGTGAAAATCTGATA
AATGCTGCTAAATTTGATCGCCTTGAACGTTTCATATGGGCTGTTCCAGC
TACTGAGAAATCCCGTAATGCGGAAATTATATTGATCGCTAAAAGTTATT
TAGCGTTTCGTAGTGGACAGTTCGAATTGCTGTACGAGCTTCTACAAAGA
CGACCTTTCGCCAAAAAGTATCACCGGCAACTGCAATATCTATGGCGGAC
CGCCCGCTACATTGAAGCCGAACGTGCACGAGGACGCGCGCTCGGTAGCG
TGGGAAAGTATCGGATTCGCAGGAAATTCCCGTTACCTTACACCATCTGG
GACGGAGAATGCATGTCTTATTGTTTCCGTGAAGAAGCTCGTGAAATTTT
GAACGCCATGTATAAAAGAACGCCTTATCCGACCGCCCAAGAGAAATATA
GCATCGCTCAACGTGCTAACCTGAGTGTAATGCAAGTCAGCAACTGGTTC
AAGAATAAACGACAGCGTGCTCGAGCAAAGAAAGCTGAAGCTAAAGACAG
taCCGAAACCAGCATCAATGAAGATGCCAGTATCACCAGAACCAAATTAG
ATGacaattatcatcatcatcctcaCACTATCAAAATGGAAGATAACCTT
CCTTCTCCTACGATCCCCAAAAGATGTTCTTCTCCACAACAACTTTTAAA
ACCGATGATAAAAATGGAGTATCAGAAACCAACATCATCGTTCAAACCTA
TTCCTCATTTACCAGCAATGACGCAGGACCTGCTTCACCATTCAAAATCA
CCAAAGCGAAGACTATTCATGACTCCGACACCGTATCATCCATATCTAGC
CTCACTTCATCATCTCCCACGTACAGAATACAGGCTAATGCCACCAGCAT
TGACGTCATCATATTATAAACTTAGTCGTGGTCACATCCAACCTTACGTT
GTTGTGCCAAGAAAACGAATTTTAGTCGATAGACCTCGTTTGGTACCAGA
CTTCTATAGAACACCTCTGGATTATCGGCATCATGCGATTTCTGATCGAC
ATTGTGAACAATGCAACAAAGACCTACATTAAATTATGATGGATTTTTGA
AAGCATGTCGTTTAAAACGATCCTTGtcatatttattaaaatataattta
tttCCATTTTTAGGACTTTAG Run BLAST on NCBI protein sequence of TCONS_00073363-protein >TCONS_00073363-protein ID=TCONS_00073363-protein|Name=TCONS_00073363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
VSSCACDVSIYIVLYYCRILFKRFWWHHSLIIFIPNVEMESPTRSITPSC
TPPPSLATLKRPDSCYSSGGETPPSTDRHCSPTFFTTDDQDVTLVCENLI
NAAKFDRLERFIWAVPATEKSRNAEIILIAKSYLAFRSGQFELLYELLQR
RPFAKKYHRQLQYLWRTARYIEAERARGRALGSVGKYRIRRKFPLPYTIW
DGECMSYCFREEAREILNAMYKRTPYPTAQEKYSIAQRANLSVMQVSNWF
KNKRQRARAKKAEAKDSTETSINEDASITRTKLDDNYHHHPHTIKMEDNL
PSPTIPKRCSSPQQLLKPMIKMEYQKPTSSFKPIPHLPAMTQDLLHHSKS
PKRRLFMTPTPYHPYLASLHHLPRTEYRLMPPALTSSYYKLSRGHIQPYV
VVPRKRILVDRPRLVPDFYRTPLDYRHHAISDRHCEQCNKDLH Run BLAST on NCBI transcript from alignment at scaffold_90:214411..216082- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073363 ID=TCONS_00073363|Name=TCONS_00073363|organism=Clytia hemisphaerica|type=transcript|length=1672bp|location=Sequence derived from alignment at scaffold_90:214411..216082- (Clytia hemisphaerica)
GTTAGTTCTTGCGCGTGCGATGTTTCCATTTATATTGTATTATATTATTG
TCGTATACTATTTAAACGATTCTGGTGGCATCATTCCTTAATCATTTTCA
TTCCAAACGTCGAAATGGAATCACCTACAAGATCAATCACGCCCTCTTGT
ACGCCACCGCCATCTCTAGCGACGTTGAAGCGCCCTGACAGTTGTTACTC
AAGTGGTGGCGAGACGCCACCTTCAACTGATAGACATTGCAGTCCAACTT
TCTTCACAACAGATGACCAAGACGTCACTTTGGTTTGTGAAAATCTGATA
AATGCTGCTAAATTTGATCGCCTTGAACGTTTCATATGGGCTGTTCCAGC
TACTGAGAAATCCCGTAATGCGGAAATTATATTGATCGCTAAAAGTTATT
TAGCGTTTCGTAGTGGACAGTTCGAATTGCTGTACGAGCTTCTACAAAGA
CGACCTTTCGCCAAAAAGTATCACCGGCAACTGCAATATCTATGGCGGAC
CGCCCGCTACATTGAAGCCGAACGTGCACGAGGACGCGCGCTCGGTAGCG
TGGGAAAGTATCGGATTCGCAGGAAATTCCCGTTACCTTACACCATCTGG
GACGGAGAATGCATGTCTTATTGTTTCCGTGAAGAAGCTCGTGAAATTTT
GAACGCCATGTATAAAAGAACGCCTTATCCGACCGCCCAAGAGAAATATA
GCATCGCTCAACGTGCTAACCTGAGTGTAATGCAAGTCAGCAACTGGTTC
AAGAATAAACGACAGCGTGCTCGAGCAAAGAAAGCTGAAGCTAAAGACAG
GTAATTGACGGATATATTCTGACTTTGATACTTTTAAAATCTTTGCGTTA
AGGTGGTCGAACATTTCTGATTAATTTTTATTTCACAGAACTGCCTTCCC
TATGTCTTGGTAACTATTTTAAAAAACTTTTTGTATCAAAAATTATAATN
TAATTTTTATTTCACAGAACTGCCTTCCCTATGTCTTGGTAACTATTTTA
AAAAACTTTTTGTATCCAAAATTATAATCTGTGTATTTTTATTATATTTA
GTACCGAAACCAGCATCAATGAAGATGCCAGTATCACCAGAACCAAATTA
GATGACAATTATCATCATCATCCTCACACTATCAAAATGGAAGATAACCT
TCCTTCTCCTACGATCCCCAAAAGATGTTCTTCTCCACAACAACTTTTAA
AACCGATGATAAAAATGGAGTATCAGAAACCAACATCATCGTTCAAACCT
ATTCCTCATTTACCAGCAATGACGCAGGACCTGCTTCACCATTCAAAATC
ACCAAAGCGAAGACTATTCATGACTCCGACACCGTATCATCCATATCTAG
CCTCACTTCATCATCTCCCACGTACAGAATACAGGCTAATGCCACCAGCA
TTGACGTCATCATATTATAAACTTAGTCGTGGTCACATCCAACCTTACGT
TGTTGTGCCAAGAAAACGAATTTTAGTCGATAGACCTCGTTTGGTACCAG
ACTTCTATAGAACACCTCTGGATTATCGGCATCATGCGATTTCTGATCGA
CATTGTGAACAATGCAACAAAGACCTACATTAAATTATGATGGATTTTTG
AAAGCATGTCGTTTAAAACGATCCTTGTCATATTTATTAAAATATAATTT
ATTTCCATTTTTAGGACTTTAG Coding sequence (CDS) from alignment at scaffold_90:214411..216082- >TCONS_00073363 ID=TCONS_00073363|Name=TCONS_00073363|organism=Clytia hemisphaerica|type=CDS|length=2664bp|location=Sequence derived from alignment at scaffold_90:214411..216082- (Clytia hemisphaerica)
TACCGAAACCAGCATCAATGAAGATGCCAGTATCACCAGAACCAAATTAG
ATGACAATTATCATCATCATCCTCACACTATCAAAATGGAAGATAACCTT
CCTTCTCCTACGATCCCCAAAAGATGTTCTTCTCCACAACAACTTTTAAA
ACCGATGATAAAAATGGAGTATCAGAAACCAACATCATCGTTCAAACCTA
TTCCTCATTTACCAGCAATGACGCAGGACCTGCTTCACCATTCAAAATCA
CCAAAGCGAAGACTATTCATGACTCCGACACCGTATCATCCATATCTAGC
CTCACTTCATCATCTCCCACGTACAGAATACAGGCTAATGCCACCAGCAT
TGACGTCATCATATTATAAACTTAGTCGTGGTCACATCCAACCTTACGTT
GTTGTGCCAAGAAAACGAATTTTAGTCGATAGACCTCGTTTGGTACCAGA
CTTCTATAGAACACCTCTGGATTATCGGCATCATGCGATTTCTGATCGAC
ATTGTGAACAATGCAACAAAGACCTACATTAAGTTAGTTCTTGCGCGTGC
GATGTTTCCATTTATATTGTATTATATTATTGTCGTATACTATTTAAACG
ATTCTGGTGGCATCATTCCTTAATCATTTTCATTCCAAACGTCGAAATGG
AATCACCTACAAGATCAATCACGCCCTCTTGTACGCCACCGCCATCTCTA
GCGACGTTGAAGCGCCCTGACAGTTGTTACTCAAGTGGTGGCGAGACGCC
ACCTTCAACTGATAGACATTGCAGTCCAACTTTCTTCACAACAGATGACC
AAGACGTCACTTTGGTTTGTGAAAATCTGATAAATGCTGCTAAATTTGAT
CGCCTTGAACGTTTCATATGGGCTGTTCCAGCTACTGAGAAATCCCGTAA
TGCGGAAATTATATTGATCGCTAAAAGTTATTTAGCGTTTCGTAGTGGAC
AGTTCGAATTGCTGTACGAGCTTCTACAAAGACGACCTTTCGCCAAAAAG
TATCACCGGCAACTGCAATATCTATGGCGGACCGCCCGCTACATTGAAGC
CGAACGTGCACGAGGACGCGCGCTCGGTAGCGTGGGAAAGTATCGGATTC
GCAGGAAATTCCCGTTACCTTACACCATCTGGGACGGAGAATGCATGTCT
TATTGTTTCCGTGAAGAAGCTCGTGAAATTTTGAACGCCATGTATAAAAG
AACGCCTTATCCGACCGCCCAAGAGAAATATAGCATCGCTCAACGTGCTA
ACCTGAGTGTAATGCAAGTCAGCAACTGGTTCAAGAATAAACGACAGCGT
GCTCGAGCAAAGAAAGCTGAAGCTAAAGACAGTACCGAAACCAGCATCAA
TGAAGATGCCAGTATCACCAGAACCAAATTAGATGACAATTATCATCATC
ATCCTCACACTATCAAAATGGAAGATAACCTTCCTTCTCCTACGATCCCC
AAAAGATGTTCTTCTCCACAACAACTTTTAAAACCGATGATAAAAATGGA
GTATCAGAAACCAACATCATCGTTCAAACCTATTCCTCATTTACCAGCAA
TGACGCAGGACCTGCTTCACCATTCAAAATCACCAAAGCGAAGACTATTC
ATGACTCCGACACCGTATCATCCATATCTAGCCTCACTTCATCATCTCCC
ACGTACAGAATACAGGCTAATGCCACCAGCATTGACGTCATCATATTATA
AACTTAGTCGTGGTCACATCCAACCTTACGTTGTTGTGCCAAGAAAACGA
ATTTTAGTCGATAGACCTCGTTTGGTACCAGACTTCTATAGAACACCTCT
GGATTATCGGCATCATGCGATTTCTGATCGACATTGTGAACAATGCAACA
AAGACCTACATTAAGTTAGTTCTTGCGCGTGCGATGTTTCCATTTATATT
GTATTATATTATTGTCGTATACTATTTAAACGATTCTGGTGGCATCATTC
CTTAATCATTTTCATTCCAAACGTCGAAATGGAATCACCTACAAGATCAA
TCACGCCCTCTTGTACGCCACCGCCATCTCTAGCGACGTTGAAGCGCCCT
GACAGTTGTTACTCAAGTGGTGGCGAGACGCCACCTTCAACTGATAGACA
TTGCAGTCCAACTTTCTTCACAACAGATGACCAAGACGTCACTTTGGTTT
GTGAAAATCTGATAAATGCTGCTAAATTTGATCGCCTTGAACGTTTCATA
TGGGCTGTTCCAGCTACTGAGAAATCCCGTAATGCGGAAATTATATTGAT
CGCTAAAAGTTATTTAGCGTTTCGTAGTGGACAGTTCGAATTGCTGTACG
AGCTTCTACAAAGACGACCTTTCGCCAAAAAGTATCACCGGCAACTGCAA
TATCTATGGCGGACCGCCCGCTACATTGAAGCCGAACGTGCACGAGGACG
CGCGCTCGGTAGCGTGGGAAAGTATCGGATTCGCAGGAAATTCCCGTTAC
CTTACACCATCTGGGACGGAGAATGCATGTCTTATTGTTTCCGTGAAGAA
GCTCGTGAAATTTTGAACGCCATGTATAAAAGAACGCCTTATCCGACCGC
CCAAGAGAAATATAGCATCGCTCAACGTGCTAACCTGAGTGTAATGCAAG
TCAGCAACTGGTTCAAGAATAAACGACAGCGTGCTCGAGCAAAGAAAGCT
GAAGCTAAAGACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073363-exon-scaffold_90-1575043694:215283..216082 | TCONS_00073363-exon-scaffold_90-1575043694:215283..216082 | Clytia hemisphaerica | exon |
| TCONS_00073363-exon-scaffold_90-1575043694:214411..215031 | TCONS_00073363-exon-scaffold_90-1575043694:214411..215031 | Clytia hemisphaerica | exon |
| TCONS_00073363-exon-scaffold_90-1510915933:215283..216082 | TCONS_00073363-exon-scaffold_90-1510915933:215283..216082 | Clytia hemisphaerica | exon |
| TCONS_00073363-exon-scaffold_90-1510915933:214411..215031 | TCONS_00073363-exon-scaffold_90-1510915933:214411..215031 | Clytia hemisphaerica | exon |
| TCONS_00073363-exon-scaffold_90-1491911889:215283..216082 | TCONS_00073363-exon-scaffold_90-1491911889:215283..216082 | Clytia hemisphaerica | exon |
| TCONS_00073363-exon-scaffold_90-1491911889:214411..215031 | TCONS_00073363-exon-scaffold_90-1491911889:214411..215031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_90 | supercontig | scaffold_90:214411..216082 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00073363 vs. Swiss-Prot (Human)
Match: SIX2 (Homeobox protein SIX2 OS=Homo sapiens GN=SIX2 PE=1 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 8.353e-53 Identity = 86/171 (50.29%), Postives = 112/171 (65.50%), Query Frame = 1
Query: 244 PTFFTTDDQDVTLVCENLINAAKFDRLERFIWAVPATEKSRNAEIILIAKSYLAFRSGQFELLYELLQRRPFAKKYHRQLQYLWRTARYIEAERARGRALGSVGKYRIRRKFPLPYTIWDGECMSYCFREEAREILNAMYKRTPYPTAQEKYSIAQRANLSVMQVSNWFKN 756
PTF T +Q V VCE L +RL RF+W++PA E E +L AK+ +AF G F LY++L+ F+ H +LQ LW A YIEAE+ RGR LG+VGKYR+RRKFPLP +IWDGE SYCF+E++R +L Y PYP+ +EK +A+ L+ QVSNWFKN
Sbjct: 5 PTFGFTQEQ-VACVCEVLQQGGNIERLGRFLWSLPACEHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHAKLQQLWLKAHYIEAEKLRGRPLGAVGKYRVRRKFPLPRSIWDGEETSYCFKEKSRSVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKN 174
The following BLAST results are available for this feature:
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