TCONS_00073363-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073363-protein
Unique NameTCONS_00073363-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073363-protein ID=TCONS_00073363-protein|Name=TCONS_00073363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=443bp
VSSCACDVSIYIVLYYCRILFKRFWWHHSLIIFIPNVEMESPTRSITPSC
TPPPSLATLKRPDSCYSSGGETPPSTDRHCSPTFFTTDDQDVTLVCENLI
NAAKFDRLERFIWAVPATEKSRNAEIILIAKSYLAFRSGQFELLYELLQR
RPFAKKYHRQLQYLWRTARYIEAERARGRALGSVGKYRIRRKFPLPYTIW
DGECMSYCFREEAREILNAMYKRTPYPTAQEKYSIAQRANLSVMQVSNWF
KNKRQRARAKKAEAKDSTETSINEDASITRTKLDDNYHHHPHTIKMEDNL
PSPTIPKRCSSPQQLLKPMIKMEYQKPTSSFKPIPHLPAMTQDLLHHSKS
PKRRLFMTPTPYHPYLASLHHLPRTEYRLMPPALTSSYYKLSRGHIQPYV
VVPRKRILVDRPRLVPDFYRTPLDYRHHAISDRHCEQCNKDLH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045518XLOC_045518Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073363TCONS_00073363Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR031701SIX1_SD
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 203..264
e-value: 1.0E-12
score: 58.3
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 209..258
e-value: 6.0E-13
score: 48.3
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 209..260
score: 13.831
NoneNo IPR availableGENE3D1.10.10.60coord: 208..244
e-value: 9.4E-14
score: 50.5
NoneNo IPR availableGENE3D1.10.10.60coord: 245..325
e-value: 4.6E-4
score: 19.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..80
NoneNo IPR availableCDDcd00086homeodomaincoord: 207..261
e-value: 9.33847E-12
score: 59.1793
IPR031701Homeobox protein SIX1, N-terminal SD domainPFAMPF16878SIX1_SDcoord: 89..196
e-value: 9.8E-35
score: 119.3
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 235..258
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 201..262

Blast
[Close]
BLAST of TCONS_00073363-protein vs. Swiss-Prot (Human)
Match: SIX1 (Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.840e-59
Identity = 92/188 (48.94%), Postives = 126/188 (67.02%), Query Frame = 0 
Query:   82 PTFFTTDDQDVTLVCENLINAAKFDRLERFIWAVPATEKSRNAEIILIAKSYLAFRSGQFELLYELLQRRPFAKKYHRQLQYLWRTARYIEAERARGRALGSVGKYRIRRKFPLPYTIWDGECMSYCFREEAREILNAMYKRTPYPTAQEKYSIAQRANLSVMQVSNWFKNKRQRARAKKAEAKDSTE 269
            P+F  T +Q V  VCE L      +RL RF+W++PA +     E +L AK+ +AF  G F  LY++L+   F+   H +LQ LW  A Y+EAE+ RGR LG+VGKYR+RRKFPLP TIWDGE  SYCF+E++R +L   Y   PYP+ +EK  +A+   L+  QVSNWFKN+RQR RA +A+ +++TE
Sbjct:    5 PSFGFTQEQ-VACVCEVLQQGGNLERLGRFLWSLPACDHLHKNESVLKAKAVVAFHRGNFRELYKILESHQFSPHNHPKLQQLWLKAHYVEAEKLRGRPLGAVGKYRVRRKFPLPRTIWDGEETSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQVSNWFKNRRQRDRAAEAKERENTE 191
The following BLAST results are available for this feature:
BLAST of TCONS_00073363-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SIX12.840e-5948.94Homeobox protein SIX1 OS=Homo sapiens GN=SIX1 PE=1... [more]
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