Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073316 ID=TCONS_00073316|Name=TCONS_00073316|organism=Clytia hemisphaerica|type=transcript|length=1122bpRun BLAST on NCBI protein sequence of TCONS_00073316-protein >TCONS_00073316-protein ID=TCONS_00073316-protein|Name=TCONS_00073316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp METQQYKVTLKDVTSFLSKNDEKIEERTNYAITLLQSLPCARYAVLEKIGRun BLAST on NCBI transcript from alignment at scaffold_9:178423..192491- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073316 ID=TCONS_00073316|Name=TCONS_00073316|organism=Clytia hemisphaerica|type=transcript|length=14069bp|location=Sequence derived from alignment at scaffold_9:178423..192491- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_9:178423..192491- >TCONS_00073316 ID=TCONS_00073316|Name=TCONS_00073316|organism=Clytia hemisphaerica|type=CDS|length=8937bp|location=Sequence derived from alignment at scaffold_9:178423..192491- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073316 vs. Swiss-Prot (Human)
Match: INT5 (Integrator complex subunit 5 OS=Homo sapiens GN=INTS5 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.316e-28 Identity = 92/352 (26.14%), Postives = 148/352 (42.05%), Query Frame = 2 Query: 53 TQQYKVTLKDVTSFLSKNDEKIEERTNYAITLLQSLPCARYAVLEKIGEVFFDEAQRYIVELER--------------QHLEDGGTLISETATLNHDIQIKKIKHVLISSIESNSKAWAPLIFQWAVQTCSQICSQYGTSRH----FSIMPLEERLQMWLACSATNSLMEITITCMKKLIDKNEESCVKSLLGATLSCSPFFDWALAHLSCAFPSIVPNRLLWHALDAF---------------------------SKQSRKAEVIKETILSIFDLMMPKIENH---IQNCIQEMFMSSLVEVKSDEDEKSHTLLCIIPFLLHLGVAKIELFTPIVGTILDQSKFYCVYRQF 964 +Q+ K L V L + E + LL+SLP AR AVL+ + VF + + ++ L+ H+ GG + + +++++ VL I +N KAWAP+I W++ Q+ S Y + +H + L E LQ+W+ C AT +LM+I + C+ LI ++CV +LL ++ SP FDW +AH+ +FP + +R+L L F + AE I S+ ++ H I+ + MF SL S +L +PFLL L V L + G ++D K V Q Sbjct: 32 SQEIKAFLTGVDPILG-HQLSAREHARCGLLLLRSLPPARAAVLDHLRGVFDESVRAHLAALDETPVAGPPHLRPPPPSHVPAGGPGLEDV--------VQEVQQVLSEFIRANPKAWAPVISAWSIDLMGQLSSTY-SGQHQRVPHATGALNELLQLWMGCRATRTLMDIYVQCLSALIGSCPDACVDALLDTSVQHSPHFDWVVAHIGSSFPGTIISRVLSCGLKDFCVHGGAGGGAGSSGGSSSQTPSTDPFPGSPAIPAEKRVPKIASVVGILGHLASRHGDSIRRELLRMFHDSLAG-GSGGRSGDPSLQATVPFLLQLAVMSPALLGTVSGELVDCLKPPAVLSQL 372 The following BLAST results are available for this feature:
BLAST of TCONS_00073316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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