TCONS_00073316-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073316-protein
Unique NameTCONS_00073316-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073316-protein ID=TCONS_00073316-protein|Name=TCONS_00073316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
METQQYKVTLKDVTSFLSKNDEKIEERTNYAITLLQSLPCARYAVLEKIG
EVFFDEAQRYIVELERQHLEDGGTLISETATLNHDIQIKKIKHVLISSIE
SNSKAWAPLIFQWAVQTCSQICSQYGTSRHFSIMPLEERLQMWLACSATN
SLMEITITCMKKLIDKNEESCVKSLLGATLSCSPFFDWALAHLSCAFPSI
VPNRLLWHALDAFSKQSRKAEVIKETILSIFDLMMPKIENHIQNCIQEMF
MSSLVEVKSDEDEKSHTLLCIIPFLLHLGVAKIELFTPIVGTILDQSKFY
CVYRQFTTVGVWTVLVHILIRFVDNINQQM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045484XLOC_045484Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073316TCONS_00073316Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029445INTS5_N
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029445Integrator complex subunit 5, N-terminalPFAMPF14837INTS5_Ncoord: 10..214
e-value: 8.5E-45
score: 152.9

Blast
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BLAST of TCONS_00073316-protein vs. Swiss-Prot (Human)
Match: INT5 (Integrator complex subunit 5 OS=Homo sapiens GN=INTS5 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.939e-27
Identity = 67/228 (29.39%), Postives = 110/228 (48.25%), Query Frame = 0 
Query:    3 TQQYKVTLKDVTSFLSKNDEKIEERTNYAITLLQSLPCARYAVLEKIGEVFFDEAQRYIVELER--------------QHLEDGGTLISETATLNHDIQIKKIKHVLISSIESNSKAWAPLIFQWAVQTCSQICSQYGTSRH---FSIMPLEERLQMWLACSATNSLMEITITCMKKLIDKNEESCVKSLLGATLSCSPFFDWALAHLSCAFPSIVPNRLLWHALDAF 213
            +Q+ K  L  V   L  +     E     + LL+SLP AR AVL+ +  VF +  + ++  L+                H+  GG  + +         +++++ VL   I +N KAWAP+I  W++    Q+ S Y         +   L E LQ+W+ C AT +LM+I + C+  LI    ++CV +LL  ++  SP FDW +AH+  +FP  + +R+L   L  F
Sbjct:   32 SQEIKAFLTGVDPILG-HQLSAREHARCGLLLLRSLPPARAAVLDHLRGVFDESVRAHLAALDETPVAGPPHLRPPPPSHVPAGGPGLEDV--------VQEVQQVLSEFIRANPKAWAPVISAWSIDLMGQLSSTYSGQHQRVPHATGALNELLQLWMGCRATRTLMDIYVQCLSALIGSCPDACVDALLDTSVQHSPHFDWVVAHIGSSFPGTIISRVLSCGLKDF 250
The following BLAST results are available for this feature:
BLAST of TCONS_00073316-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INT51.939e-2729.39Integrator complex subunit 5 OS=Homo sapiens GN=IN... [more]
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