TCONS_00073315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073315
Unique NameTCONS_00073315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1847

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073315 ID=TCONS_00073315|Name=TCONS_00073315|organism=Clytia hemisphaerica|type=transcript|length=1847bp
GggaaaaaaaggttttgaaacaaTATCTCACTggttaattttgattttga
ttaacATGATGATTGACCTTAAAcctcacttttttagaaaataaattcac
TCGCATTAATAAACAATGGGCAACTATTTTATGAAAGGATTTCAAAGGTT
ATTTGGTGGCCCAGAAGTTCGTATTCTGATGGTAGGTTTGGACAATGCTG
GCAAAACAACCATTTTATACAAATTCCGCTTAAATGAAACCGTTTCAACG
GTCCCAACCATTGGTTTTAATGTGGAGACAgtcaaatataaaaatattgc
tttCACTGTTTGGGATATTGGTGGTCAGGATAAGATTCGAAGTCTCTGGC
GTGTTTATTTGAAAGGTTCGACTGGATTGATTTTTGTTGTCGATAGTAGT
GATAAACAGCGCTTGAGTGAAGCAAAAAATGAATTACACAAACTATTAGA
AGAAGAAGATCTTAAAGAGGCTCATGTTTTAGTGTTCGCCAATAAACAAG
ATGTTTTAGGTGCTTTAAATGTTAATGATGTTAAAGCAGGACTTGGTTTG
GCAGAATTAACAATGCATAATTGGTTTATACAGCCTACTGTTGCGGTGAA
GGGTGAAGGCCTTTTTCAAGGGTTGGATTGGTTAGCACAGCAAATACAGA
GTAATCAATTTCTCAacaggaaaatgttttaaaaaatatgaTTCTTATTT
GGTGTATATGTTTTTACTGGcacatttatttttgttatatacAAAGACCC
TGGTGGAAAGATGACGATCTCCAATCAATTTGTGCAGCATTCTCAGATTT
TATCGAACGCTAACTTTTTAAAAGCTAGAAACAACAGAGCAAGAACGTTG
AAAAGGTTCTATCTTCTTTAAATAATTGTTTTAATCCAACTGTAAATTGC
AAAGTTGATTTGAacttatgttttttttaattatctaTTTTAATTATATG
TAATCAACTTTTACTGAGCTTTTCCTAAAACTAGTAGACTTATATTGGGA
GTCTTGAAATTAATCAGACTATCGTGGTTATATTTGTTTTACTACTTTTC
TGTGATCTTTTGGTGCTTTGTTCGATcggatttcattttcatttcctaat
aatttgaaaattctcTTCATTCTCTAATGTtcttgaaattccaaaaaaaa
ttaaaagttttgtaTGATTTTATAATTACTATTATTGCCATatacaaaaa
ttttatttattttctattttgaattaattttttttgacttctttATTAAG
TATGCCTCTTTGTGTCAGGGTATCTGGCCTTTATCTTTAACACTCCATGC
ATTTTGTGAAAGCTGTCAGATAAGTTTTGACCCTCGGAGATAATTTCTTC
CGCACCGATGTGAAAAGTTTTAATGATCCATGTTCAAGCTTCGCCTTACT
AAGCTTAAGTACTAAGTTACAAAGAAAGTGATGTTTTTCTTATCAAATAT
TGAATAGTATAagataatatatattttatgtatattttggtaATAGGGAA
GTTTGACAAAGTGAGGTCAGATTATTACCTCAATTTGTCtcaatgatttt
gaaattatataaaaTGCGAACTTCATTTTAATCGAACGATTTTGTGATAC
CACCGATCTCAAAAAGACTTGACCTTAACTAAATTCTTTAGTGCAGAGTC
TATTTTTTttgacctacctggaggtcctataaattaacctgtgctcgtcc
gtccgttcgtccgttcgtctgttaccaacttttctcgggattgaatcata
ggaattttgtgatttttggttAAAAGGTGCAAAATGATGAttaccaaaat
gtgacggagcaagattttcaaaagaaaaatttttgggtCAATTTGGG
Run BLAST on NCBI

protein sequence of TCONS_00073315-protein

>TCONS_00073315-protein ID=TCONS_00073315-protein|Name=TCONS_00073315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGNYFMKGFQRLFGGPEVRILMVGLDNAGKTTILYKFRLNETVSTVPTIG
FNVETVKYKNIAFTVWDIGGQDKIRSLWRVYLKGSTGLIFVVDSSDKQRL
SEAKNELHKLLEEEDLKEAHVLVFANKQDVLGALNVNDVKAGLGLAELTM
HNWFIQPTVAVKGEGLFQGLDWLAQQIQSNQFLNRKMF
Run BLAST on NCBI

transcript from alignment at scaffold_9:139511..141743-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073315 ID=TCONS_00073315|Name=TCONS_00073315|organism=Clytia hemisphaerica|type=transcript|length=2233bp|location=Sequence derived from alignment at scaffold_9:139511..141743- (Clytia hemisphaerica)
GGGAAAAAAAGGTTTTGAAACAATATCTCACTGGTTAATTTTGATTTTGA
TTAACATGATGATTGACCTTAAACCTCACTTTTTTAGAAAATAAATTCAC
TCGCATTAATAAACAATGGGCAACTATTTTATGAAAGGATTTCAAAGGTT
ATTTGGTGGCCCAGAAGTTCGTATTCTGATGGTAGGTTTGGACAATGCTG
GCAAAACAACCATTTTATACAAATTCCGCTTAAATGAAACCGTTTCAACG
GTCCCAACCATTGGTTTTAATGTGGAGACAGTCAAATATAAAAATATTGC
TTTCACTGTTTGGGATATTGGTGGTCAGGTAAGCCTTTACAGCAGTTATT
ATGAGAATACTTTAATTATAAAACCTTCAAATTATTGATCAATTTCATGA
AAGCACTTTTTTCAAATTGTTTCTTTGATAACAAATCTTCCTGAAATTAC
ATTGTTTGGTTTTCGTTCCTGTTAACATATCATCTTTAATTTAAGCCTCA
AAATTTACAAATTCAGATCGAGGAATACACTATTAAAATAAGTGGATCAA
TTTTGTAGTGCACAAAGCAGCCCCTTTTAAATACAATATTTTTCTTTTTG
GACAAAGTTTAGATTTTAAATATTTCGTGAGGCCTGTGGAATATCGAAAC
TGGGAAAAGTTTTTCTTATTTTTGCCTAGAACTTAATGAAATTTATCATC
GTTTTATTTTTCAGGATAAGATTCGAAGTCTCTGGCGTGTTTATTTGAAA
GGTTCGACTGGATTGATTTTTGTTGTCGATAGTAGTGATAAACAGCGCTT
GAGTGAAGCAAAAAATGAATTACACAAACTATTAGAAGAAGAAGATCTTA
AAGAGGCTCATGTTTTAGTGTTCGCCAATAAACAAGATGTTTTAGGTGCT
TTAAATGTTAATGATGTTAAAGCAGGACTTGGTTTGGCAGAATTAACAAT
GCATAATTGGTTTATACAGCCTACTGTTGCGGTGAAGGGTGAAGGCCTTT
TTCAAGGGTTGGATTGGTTAGCACAGCAAATACAGAGTAATCAATTTCTC
AACAGGAAAATGTTTTAAAAAATATGATTCTTATTTGGTGTATATGTTTT
TACTGGCACATTTATTTTTGTTATATACAAAGACCCTGGTGGAAAGATGA
CGATCTCCAATCAATTTGTGCAGCATTCTCAGATTTTATCGAACGCTAAC
TTTTTAAAAGCTAGAAACAACAGAGCAAGAACGTTGAAAAGGTTCTATCT
TCTTTAAATAATTGTTTTAATCCAACTGTAAATTGCAAAGTTGATTTGAA
CTTATGTTTTTTTTAATTATCTATTTTAATTATATGTAATCAACTTTTAC
TGAGCTTTTCCTAAAACTAGTAGACTTATATTGGGAGTCTTGAAATTAAT
CAGACTATCGTGGTTATATTTGTTTTACTACTTTTCTGTGATCTTTTGGT
GCTTTGTTCGATCGGATTTCATTTTCATTTCCTAATAATTTGAAAATTCT
CTTCATTCTCTAATGTTCTTGAAATTCCAAAAAAAATTAAAAGTTTTGTA
TGATTTTATAATTACTATTATTGCCATATACAAAAATTTTATTTATTTTC
TATTTTGAATTAATTTTTTTTGACTTCTTTATTAAGTATGCCTCTTTGTG
TCAGGGTATCTGGCCTTTATCTTTAACACTCCATGCATTTTGTGAAAGCT
GTCAGATAAGTTTTGACCCTCGGAGATAATTTCTTCCGCACCGATGTGAA
AAGTTTTAATGATCCATGTTCAAGCTTCGCCTTACTAAGCTTAAGTACTA
AGTTACAAAGAAAGTGATGTTTTTCTTATCAAATATTGAATAGTATAAGA
TAATATATATTTTATGTATATTTTGGTAATAGGGAAGTTTGACAAAGTGA
GGTCAGATTATTACCTCAATTTGTCTCAATGATTTTGAAATTATATAAAA
TGCGAACTTCATTTTAATCGAACGATTTTGTGATACCACCGATCTCAAAA
AGACTTGACCTTAACTAAATTCTTTAGTGCAGAGTCTATTTTTTTTGACC
TACCTGGAGGTCCTATAAATTAACCTGTGCTCGTCCGTCCGTTCGTCCGT
TCGTCTGTTACCAACTTTTCTCGGGATTGAATCATAGGAATTTTGTGATT
TTTGGTTAAAAGGTGCAAAATGATGATTACCAAAATGTGACGGAGCAAGA
TTTTCAAAAGAAAAATTTTTGGGTCAATTTGGG

Coding sequence (CDS) from alignment at scaffold_9:139511..141743-

>TCONS_00073315 ID=TCONS_00073315|Name=TCONS_00073315|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at scaffold_9:139511..141743- (Clytia hemisphaerica)
GATAAGATTCGAAGTCTCTGGCGTGTTTATTTGAAAGGTTCGACTGGATT
GATTTTTGTTGTCGATAGTAGTGATAAACAGCGCTTGAGTGAAGCAAAAA
ATGAATTACACAAACTATTAGAAGAAGAAGATCTTAAAGAGGCTCATGTT
TTAGTGTTCGCCAATAAACAAGATGTTTTAGGTGCTTTAAATGTTAATGA
TGTTAAAGCAGGACTTGGTTTGGCAGAATTAACAATGCATAATTGGTTTA
TACAGCCTACTGTTGCGGTGAAGGGTGAAGGCCTTTTTCAAGGGTTGGAT
TGGTTAGCACAGCAAATACAGAGTAATCAATTTCTCAACAGGAAAATGTT
TTAAATGGGCAACTATTTTATGAAAGGATTTCAAAGGTTATTTGGTGGCC
CAGAAGTTCGTATTCTGATGGTAGGTTTGGACAATGCTGGCAAAACAACC
ATTTTATACAAATTCCGCTTAAATGAAACCGTTTCAACGGTCCCAACCAT
TGGTTTTAATGTGGAGACAGTCAAATATAAAAATATTGCTTTCACTGTTT
GGGATATTGGTGGTCAGGATAAGATTCGAAGTCTCTGGCGTGTTTATTTG
AAAGGTTCGACTGGATTGATTTTTGTTGTCGATAGTAGTGATAAACAGCG
CTTGAGTGAAGCAAAAAATGAATTACACAAACTATTAGAAGAAGAAGATC
TTAAAGAGGCTCATGTTTTAGTGTTCGCCAATAAACAAGATGTTTTAGGT
GCTTTAAATGTTAATGATGTTAAAGCAGGACTTGGTTTGGCAGAATTAAC
AATGCATAATTGGTTTATACAGCCTACTGTTGCGGTGAAGGGTGAAGGCC
TTTTTCAAGGGTTGGATTGGTTAGCACAGCAAATACAGAGTAATCAATTT
CTCAACAGGAAAATGTTTTAAATGGGCAACTATTTTATGAAAGGATTTCA
AAGGTTATTTGGTGGCCCAGAAGTTCGTATTCTGATGGTAGGTTTGGACA
ATGCTGGCAAAACAACCATTTTATACAAATTCCGCTTAAATGAAACCGTT
TCAACGGTCCCAACCATTGGTTTTAATGTGGAGACAGTCAAATATAAAAA
TATTGCTTTCACTGTTTGGGATATTGGTGGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045483XLOC_045483Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073315-proteinTCONS_00073315-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073315-exon-scaffold_9-1575043694:141416..141743TCONS_00073315-exon-scaffold_9-1575043694:141416..141743Clytia hemisphaericaexon
TCONS_00073315-exon-scaffold_9-1575043694:139511..141029TCONS_00073315-exon-scaffold_9-1575043694:139511..141029Clytia hemisphaericaexon
TCONS_00073315-exon-scaffold_9-1510915933:141416..141743TCONS_00073315-exon-scaffold_9-1510915933:141416..141743Clytia hemisphaericaexon
TCONS_00073315-exon-scaffold_9-1510915933:139511..141029TCONS_00073315-exon-scaffold_9-1510915933:139511..141029Clytia hemisphaericaexon
TCONS_00073315-exon-scaffold_9-1491911889:141416..141743TCONS_00073315-exon-scaffold_9-1491911889:141416..141743Clytia hemisphaericaexon
TCONS_00073315-exon-scaffold_9-1491911889:139511..141029TCONS_00073315-exon-scaffold_9-1491911889:139511..141029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:139511..141743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
43.2918	41.4888	86.3814	95.6354	65.807	53.6154	62.4538	65.6851	36.9233	36.6556	25.7951	19.0433	16.0503	13.7037	21.1972	22.4848	30.2413	23.8209	11.6008	16.5401	22.8417	21.1318	41.4141	38.5579	17.8845	22.6411	30.5685	22.1235	38.6733	36.2427
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR005225Small_GTP-bd_dom
IPR024156Small_GTPase_ARF
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00073315 vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 3.297e-63
Identity = 107/181 (59.12%), Postives = 143/181 (79.01%), Query Frame = 2 
Query:  116 MGNYFMKGFQRLFGGPEVRILMVGLDNAGKTTILYKFRLNETVSTVPTIGFNVETVKYKNIAFTVWDIGGQDKIRSLWRVYLKGSTGLIFVVDSSDKQRLSXXXXXXXXXXXXXXXXXAHVLVFANKQDVLGALNVNDVKAGLGLAELTMHNWFIQPTVAVKGEGLFQGLDWLAQQIQSNQ 658
            MGN F   F+ LFG  E+RILMVGLD AGKTTILYK +L E V+T+PTIGFNVETV+YKNI+FTVWD+GGQDKIR LWR Y + + GLIFVVDS+D++R++EA+ EL ++L E++L++A +LVFANKQD+  A+N  ++   LGL  L   NW+IQ T A  G+GL++GLDWL+ Q+++ +
Sbjct:    1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00073315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARF13.297e-6359.12ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
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