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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00073315-protein ID=TCONS_00073315-protein|Name=TCONS_00073315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MGNYFMKGFQRLFGGPEVRILMVGLDNAGKTTILYKFRLNETVSTVPTIG
FNVETVKYKNIAFTVWDIGGQDKIRSLWRVYLKGSTGLIFVVDSSDKQRL
SEAKNELHKLLEEEDLKEAHVLVFANKQDVLGALNVNDVKAGLGLAELTM
HNWFIQPTVAVKGEGLFQGLDWLAQQIQSNQFLNRKMF Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007264 | small GTPase mediated signal transduction |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007264 |
small GTPase mediated signal transduction |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0005525 |
GTP binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 97..120 |
| None | No IPR available | SMART | SM00175 | rab_sub_5 | coord: 18..166
e-value: 0.003
score: -69.1 |
| None | No IPR available | SMART | SM00177 | arf_sub_2 | coord: 1..181
e-value: 1.1E-89
score: 314.0 |
| None | No IPR available | SMART | SM00178 | sar_sub_1 | coord: 3..177
e-value: 5.8E-22
score: 89.0 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 4..183
e-value: 4.2E-46
score: 156.0 |
| None | No IPR available | CDD | cd00878 | Arf_Arl | coord: 19..176
e-value: 6.40381E-90
score: 262.127 |
| IPR006689 | Small GTPase superfamily, ARF/SAR type | PRINTS | PR00328 | SAR1GTPBP | coord: 74..99
score: 32.13
coord: 119..140
score: 24.6
coord: 19..42
score: 48.04
coord: 47..71
score: 33.41 |
| IPR006689 | Small GTPase superfamily, ARF/SAR type | PFAM | PF00025 | Arf | coord: 8..177
e-value: 6.8E-69
score: 230.7 |
| IPR005225 | Small GTP-binding protein domain | TIGRFAM | TIGR00231 | TIGR00231 | coord: 18..138
e-value: 8.1E-22
score: 75.7 |
| IPR024156 | Small GTPase superfamily, ARF type | PROSITE | PS51417 | ARF | coord: 11..177
score: 23.028 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 14..181 |
Blast
BLAST of TCONS_00073315-protein vs. Swiss-Prot (Human)
Match: ARF1 (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2) HSP 1 Score: 231.491 bits (589), Expect = 2.363e-78 Identity = 107/181 (59.12%), Postives = 143/181 (79.01%), Query Frame = 0 Query: 1 MGNYFMKGFQRLFGGPEVRILMVGLDNAGKTTILYKFRLNETVSTVPTIGFNVETVKYKNIAFTVWDIGGQDKIRSLWRVYLKGSTGLIFVVDSSDKQRLSEAKNELHKLLEEEDLKEAHVLVFANKQDVLGALNVNDVKAGLGLAELTMHNWFIQPTVAVKGEGLFQGLDWLAQQIQSNQ 181
MGN F F+ LFG E+RILMVGLD AGKTTILYK +L E V+T+PTIGFNVETV+YKNI+FTVWD+GGQDKIR LWR Y + + GLIFVVDS+D++R++EA+ EL ++L E++L++A +LVFANKQD+ A+N ++ LGL L NW+IQ T A G+GL++GLDWL+ Q+++ +
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK 181
The following BLAST results are available for this feature:
BLAST of TCONS_00073315-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 ( Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| ARF1 | 2.363e-78 | 59.12 | ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... | [more] |
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