TCONS_00073308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073308
Unique NameTCONS_00073308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1093

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073308 ID=TCONS_00073308|Name=TCONS_00073308|organism=Clytia hemisphaerica|type=transcript|length=1093bp
GGAAATTCGTGTGTGCTTTTTGCTTCGGTACCACGATTGAGCCTCTGGAA
AGCGGTCAGAAGAGTAATTTCACGGCTACCGATATCAAGCCTCTGCTTGA
TCCGCTAAAGTCGTTTAGCCTCTGAATAGATCGGCAACCGGTTCTATTTA
TACCCTCTAGaatttatcaaaacaaacttactgTCATTCTTTAGCCGACC
AAGATGACCACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCACGTCAG
TGCTGGTCATGGCCGTGTTGGCAAACACAGAAAACATCCCGGTGGTCGAG
GAAAAGCTGGTGGCCAACATCACCACAGAACACTTATGGACAAGTACCAT
CCTGGTTACTTTGGTAAAGTTGGTATGAGATATTTCCACAAAACTCTCAA
TAAATACCACTGCCCAACTGTCAATTGTGATAAATTATGGAGCCTTGTCA
GTGAACAAACAAGAAAGAACTATGCTGGAAAGAAAGAAGGTCCAGCACCA
GTCATTGATTGTGTTCAGGCaggATACTACAAAGTCCTTGGAAAAGGGTT
ATTACCAAAACAACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAAAG
CAGAAGATAAAATCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTTAA
ATTGTGAATAAAAAAATCTGGTGGGAATTGCTCTGTCTCTGTTATTTAGG
GAATTGTTGTTGAGTTTGATTGTACAATAAAGGNCTGTCTCTGTTATTTA
AGGAATTGTTGTTGAGTTTGATTGTACAATAAAGGAAGGTTCTATAATAC
TGCTATTTTCATCTTAAGTGCAATGAATGTGATAGCTTTTACAATGACAA
GGCTTTGAAATGAAAGACtcgtgatatttttttgagTGTTAAGACCATCA
CTTGAATTATACAATCAAGCTTGATTTGTTTGTATCAGCCGTCTTTTTTT
TCTGTATCAACTATTGAGCTTTGAGTAATTTTGTGCACTTGTATAAATTG
CAATGGTGTGATGATTTCTTATATCTGTCAATCCTCTGAACAAAATGAAG
ATAGATTATAACGATCTGAACATTGCTAAGTACCTCTTTTTCT
Run BLAST on NCBI

protein sequence of TCONS_00073308-protein

>TCONS_00073308-protein ID=TCONS_00073308-protein|Name=TCONS_00073308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MTTRLKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGQHHHRTLMDKYHP
GYFGKVGMRYFHKTLNKYHCPTVNCDKLWSLVSEQTRKNYAGKKEGPAPV
IDCVQAGYYKVLGKGLLPKQPVIVKARFFSRKAEDKIKSVGGTCVLTA
Run BLAST on NCBI

transcript from alignment at scaffold_9:220906..223850+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073308 ID=TCONS_00073308|Name=TCONS_00073308|organism=Clytia hemisphaerica|type=transcript|length=2945bp|location=Sequence derived from alignment at scaffold_9:220906..223850+ (Clytia hemisphaerica)
GGAAATTCGTGTGTGCTTTTTGCTTCGGTACCACGATTGAGCCTCTGGAA
AGCGGTCAGAAGAGTAATTTCACGGCTACCGATATCAAGCCTCTGCTTGA
TCCGCTAAAGTCGTTTAGCCTCTGAATAGATCGGCAACCGGTTCTATTTA
TACCCTCTAGaatttatcaaaacaaacttactgTCATTCTTTAGCCGACC
AAGATGGTGAGTCTAGTCAACAACTTTTTCCACTTTTCTTCCTGTGGAAA
TCATCAGAATCTTTCAgccaaacattttcaaaagttcTAAAGTTTCCTTT
GTTATCATTGAATTTCAGTTCCTTGGCTTTATTTTCCGGCTTTGTAACAT
CTTTTGGTGTTTTATGAACGAATCATTAGAGCTTCAATGGTGTTTTCAGc
atattcgatttttttttgtcCTAGACCACCAGATTGAAGAAGAACCGAAA
GAAGAGAGGGCACGTCAGTGCTGGTCATGGCCGTGTTGGTATGTTAAGAT
TTTATGAGTACATAAGTGTGCCAGAAGAGTAACTGTAATCATAACCTTGC
TTGAAAGTTTAACCTCTCCATTAAGTATTAATTCACTGAGGAAATTTTGT
TTCAATCACCTGAAGATGCTTGATGGatttattttatcatttctCCAGGC
AAACACAGAAAACATCCCGGTGGTCGAGGAAAAGCTGGTGGCCAACATCA
CCACAGAACACTTATGGACAAGTACCATCCTGGTTACTTTGGTAAAGTTG
GTATGAGATATTTCCACAAAACTCTCAATAAATACCACTGCCCAACTGTC
AATTGTGATAAATTATGGAGCCTTGTCAGTGAACAAACAAGAAAGAACTA
TGCTGGAAAGAAAGAAGGTCCAGCACCAGTCATTGATTGTGTTCAGGCag
tatgtttcatttatatgtCATTTGTTTATGGAAGCATTATTTAGCTGTGT
GATTCCAACAACTTTCTTTGCTGAGGCATCAGGGGGCCACTCGCACATCA
ATTTTTCTCATGTTagcagttgggtgtttaagataaaaacatcaattttt
gcTCTACACAACAATTATTGTCGAAAGCGTTAATTTTTTAGATGATAAAT
AATGATGATTCAGCATtagatctttgaaaaaattgttgtttttcaCCCAA
CTGGTTAGGTTGAGCGGGTTGGTTCAAGTATGAGATACTAATTTTGAAGA
TCTATTTTTCATAGTATCTGGTCACTCTTGCTGAAAAGGAcctgtttttg
attttgttttgatatgtttgGTAGTTGTTTTTTCCTGTATCATATCTTAT
GCTGGCTAGGCTACgtatatcttccttcgtttcgagagtaaaactcctac
tcttcgcgatatgagcactgctcttgttttgaatattaaaatcctttgga
taaatcgcatgcgcactgaggtttaaATGATACAATAGAGAGTTtaaaaa
acctaagccaatcagctgtgtctTAAACATTATTTTCTATTATGtataaa
cctattaataagcaattcccggtgggggctaCTAGTGGCCGCccatagca
gtgcctatagtcCAAGAGTAAGACCACGAAGGtgataaagatagatggag
agtcaatgccttttgttctattctgatttatcatcggaagcaaagaGCTG
TTtcgttgctttgggaataagatgattaattttgggtatactcgtgggaa
tatttaagatgaatgaaaaaacattacatttttaacaagtatattgaaat
atgatagccttgtcatgaaaaattaaaaaaaacttcacataataagccct
aataagcacaatactccaaacttctaggggaagctgcgcATAaagtgtta
cgattaggaaccttgtatcgatcattttgtcagagtatgaaaaccgctgc
ccacttacacgtgaagatttgaagataagaaactttcaatgataatgtga
tgcaactttcaatgttaacaaaatgccagcccaaaaatgtgtccctatga
aattaatatactaTTTTAGTCTTACATCAGTTGGAACTATTTTGAATCGt
attttaacaaggattttcggcaaaattaagtttttcaaaatcaaccaaag
agtctctttctgttcttataaagttataaattgatgtttgatggtacatc
aaagaaaagccactttaaatagatttataaaagatttcaacggccatcta
ggtcattaccgagacgttttctctccatctatatctttattaccttcatg
gtaaGACCTAAAAGCCTGgcgctgtctattgtgtagactactgGGAGCCA
AGCTATTTAATTCGAATGGAAATTATTAAGTTATCAAATTTTAGAGTAAt
gaaaaattcataattttttttagggATACTACAAAGTCCTTGGAAAAGGG
TTATTACCAAAACAACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAA
AGCAGAAGATAAAATCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTT
AAATTGTGAATAAAAAAATCTGGTGGGAATTGCTCTGTCTCTGTTATTTA
GGGAATTGTTGTTGAGTTTGATTGTACAATAAAGGNCTGTCTCTGTTATT
TAAGGAATTGTTGTTGAGTTTGATTGTACAATAAAGGAAGGTTCTATAAT
ACTGCTATTTTCATCTTAAGTGCAATGAATGTGATAGCTTTTACAATGAC
AAGGCTTTGAAATGAAAGACtcgtgatatttttttgagTGTTAAGACCAT
CACTTGAATTATACAATCAAGCTTGATTTGTTTGTATCAGCCGTCTTTTT
TTTCTGTATCAACTATTGAGCTTTGAGTAATTTTGTGCACTTGTATAAAT
TGCAATGGTGTGATGATTTCTTATATCTGTCAATCCTCTGAACAAAATGA
AGATAGATTATAACGATCTGAACATTGCTAAGTACCTCTTTTTCT

Coding sequence (CDS) from alignment at scaffold_9:220906..223850+

>TCONS_00073308 ID=TCONS_00073308|Name=TCONS_00073308|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_9:220906..223850+ (Clytia hemisphaerica)
ATGACCACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCACGTCAGTGC
TGGTCATGGCCGTGTTGGCAAACACAGAAAACATCCCGGTGGTCGAGGAA
AAGCTGGTGGCCAACATCACCACAGAACACTTATGGACAAGTACCATCCT
GGTTACTTTGGTAAAGTTGGTATGAGATATTTCCACAAAACTCTCAATAA
ATACCACTGCCCAACTGTCAATTGTGATAAATTATGGAGCCTTGTCAGTG
AACAAACAAGAAAGAACTATGCTGGAAAGAAAGAAGGTCCAGCACCAGTC
ATTGATTGTGTTCAGGCaggATACTACAAAGTCCTTGGAAAAGGGTTATT
ACCAAAACAACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAAAGCAG
AAGATAAAATCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTTAAATG
ACCACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCACGTCAGTGCTGG
TCATGGCCGTGTTGGCAAACACAGAAAACATCCCGGTGGTCGAGGAAAAG
CTGGTGGCCAACATCACCACAGAACACTTATGGACAAGTACCATCCTGGT
TACTTTGGTAAAGTTGGTATGAGATATTTCCACAAAACTCTCAATAAATA
CCACTGCCCAACTGTCAATTGTGATAAATTATGGAGCCTTGTCAGTGAAC
AAACAAGAAAGAACTATGCTGGAAAGAAAGAAGGTCCAGCACCAGTCATT
GATTGTGTTCAGGCaggATACTACAAAGTCCTTGGAAAAGGGTTATTACC
AAAACAACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAAAGCAGAAG
ATAAAATCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTTAAATGACC
ACCAGATTGAAGAAGAACCGAAAGAAGAGAGGGCACGTCAGTGCTGGTCA
TGGCCGTGTTGGCAAACACAGAAAACATCCCGGTGGTCGAGGAAAAGCTG
GTGGCCAACATCACCACAGAACACTTATGGACAAGTACCATCCTGGTTAC
TTTGGTAAAGTTGGTATGAGATATTTCCACAAAACTCTCAATAAATACCA
CTGCCCAACTGTCAATTGTGATAAATTATGGAGCCTTGTCAGTGAACAAA
CAAGAAAGAACTATGCTGGAAAGAAAGAAGGTCCAGCACCAGTCATTGAT
TGTGTTCAGGCaggATACTACAAAGTCCTTGGAAAAGGGTTATTACCAAA
ACAACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAAAGCAGAAGATA
AAATCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTTAAATGACCACC
AGATTGAAGAAGAACCGAAAGAAGAGAGGGCACGTCAGTGCTGGTCATGG
CCGTGTTGGCAAACACAGAAAACATCCCGGTGGTCGAGGAAAAGCTGGTG
GCCAACATCACCACAGAACACTTATGGACAAGTACCATCCTGGTTACTTT
GGTAAAGTTGGTATGAGATATTTCCACAAAACTCTCAATAAATACCACTG
CCCAACTGTCAATTGTGATAAATTATGGAGCCTTGTCAGTGAACAAACAA
GAAAGAACTATGCTGGAAAGAAAGAAGGTCCAGCACCAGTCATTGATTGT
GTTCAGGCaggATACTACAAAGTCCTTGGAAAAGGGTTATTACCAAAACA
ACCTGTCATCGTAAAAGCTCGATTCTTCAGTCGAAAAGCAGAAGATAAAA
TCAAGAGTGTTGGAGGCACTTGTGTATTAACTGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045477XLOC_045477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073308-exon-scaffold_9-1491911889:220906..221111TCONS_00073308-exon-scaffold_9-1491911889:220906..221111Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1510915933:220906..221111TCONS_00073308-exon-scaffold_9-1510915933:220906..221111Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1575043694:220906..221111TCONS_00073308-exon-scaffold_9-1575043694:220906..221111Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1491911889:221330..221393TCONS_00073308-exon-scaffold_9-1491911889:221330..221393Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1510915933:221330..221393TCONS_00073308-exon-scaffold_9-1510915933:221330..221393Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1575043694:221330..221393TCONS_00073308-exon-scaffold_9-1575043694:221330..221393Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1491911889:221554..221804TCONS_00073308-exon-scaffold_9-1491911889:221554..221804Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1510915933:221554..221804TCONS_00073308-exon-scaffold_9-1510915933:221554..221804Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1575043694:221554..221804TCONS_00073308-exon-scaffold_9-1575043694:221554..221804Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1491911889:223279..223850TCONS_00073308-exon-scaffold_9-1491911889:223279..223850Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1510915933:223279..223850TCONS_00073308-exon-scaffold_9-1510915933:223279..223850Clytia hemisphaericaexon
TCONS_00073308-exon-scaffold_9-1575043694:223279..223850TCONS_00073308-exon-scaffold_9-1575043694:223279..223850Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073308-proteinTCONS_00073308-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:220906..223850 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1603.08	1757.67	1843.36	2440.78	907.222	757.432	1119.51	1141.09	1778.92	1620.61	1997.39	2285.39	2649.92	3253.53	2526.29	2408.91	2957.09	2268.89	1519.26	1651.29	2692.64	2562.16	2193.26	1946.21	1181.47	1415.05	3158.27	3081.97	2111.58	2165.39
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_L18e/L15P
IPR001196Ribosomal_L15_CS
IPR030878Ribosomal_L15
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00073308 vs. Swiss-Prot (Human)
Match: RL27A (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 3.074e-51
Identity = 109/148 (73.65%), Postives = 123/148 (83.11%), Query Frame = 3 
Query:  204 MTTRLKKNRKKRGHVSAXXXXXXXXXXXXXXXXXXXXXXXXXTLMDKYHPGYFGKVGMRYFHKTLNKYHCPTVNCDKLWSLVSEQTRKNYAGKKEGPAPVIDCVQAGYYKVLGKGLLPKQPVIVKARFFSRKAEDKIKSVGGTCVLTA 647
            M +RL+K RK RGHVS GHGR+GKHRKHPGGRG AGG HHHR   DKYHPGYFGKVGM+++H   N+  CPTVN DKLW+LVSEQTR N A  K G AP+ID V++GYYKVLGKG LPKQPVIVKA+FFSR+AE+KIKSVGG CVL A
Sbjct:    1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00073308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL27A3.074e-5173.6560S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
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