Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00073308-protein ID=TCONS_00073308-protein|Name=TCONS_00073308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
Term Definition
GO:0006412 translation
Vocabulary: Cellular Component
Term Definition
GO:0005622 intracellular GO:0005840 ribosome GO:0015934 large ribosomal subunit
Vocabulary: Molecular Function
Term Definition
GO:0003735 structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006412 translation
cellular_component
GO:0005622 intracellular
cellular_component
GO:0015934 large ribosomal subunit
cellular_component
GO:0005840 ribosome
molecular_function
GO:0003735 structural constituent of ribosome
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
M T T R L K K N R K K R G H V S A G H G R V G K H R K H P G G R G K A G G Q H H H R T L M D K Y H P G Y F G K V G M R Y F H K T L N K Y H C P T V N C D K L W S L V S E Q T R K N Y A G K K E G P A P V I D C V Q A G Y Y K V L G K G L L P K Q P V I V K A R F F S R K A E D K I K S V G G T C V L T A 20 40 60 80 100 120 140 Expect = 6.0E-23 / Score = 81.7 Score = Expect = 8.5E-27 / Score = 92.8 Expect = 1.6E-20 / Score = 73.1 Score = Score = Score = 11.406 Sequence PF00828 SSF52080 G3DSA:3.100.10.10 G3DSA:4.10.990.10 mobidb-lite PS00475 MF_01341
IPR Term IPR Description Source Source Term Source Description Alignment
IPR021131 Ribosomal protein L18e/L15P PFAM PF00828 Ribosomal_L27A coord: 28..145 IPR021131 Ribosomal protein L18e/L15P SUPERFAMILY 52080 Ribosomal proteins L15p and L18e coord: 6..147 None No IPR available GENE3D 3.100.10.10 coord: 58..148 None No IPR available GENE3D 4.10.990.10 coord: 6..49 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..40 IPR001196 Ribosomal protein L15, conserved site PROSITE PS00475 RIBOSOMAL_L15 coord: 110..141 IPR030878 Ribosomal protein L15 HAMAP MF_01341 Ribosomal_L15 coord: 1..147
Blast
BLAST of TCONS_00073308-protein vs. Swiss-Prot (Human)
Match:
RL27A (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)
HSP 1 Score: 225.713 bits (574), Expect = 2.799e-77
Identity = 109/148 (73.65%), Postives = 123/148 (83.11%), Query Frame = 0
Query: 1 MTTRLKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGQHHHRTLMDKYHPGYFGKVGMRYFHKTLNKYHCPTVNCDKLWSLVSEQTRKNYAGKKEGPAPVIDCVQAGYYKVLGKGLLPKQPVIVKARFFSRKAEDKIKSVGGTCVLTA 148
M +RL+K RK RGHVS GHGR+GKHRKHPGGRG AGG HHHR DKYHPGYFGKVGM+++H N+ CPTVN DKLW+LVSEQTR N A K G AP+ID V++GYYKVLGKG LPKQPVIVKA+FFSR+AE+KIKSVGG CVL A
Sbjct: 1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00073308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M T T R L K K N R K K R G H V S A G H G R V G K H R K H P G G R G K A G G Q H H H R T L M D K Y H P G Y F G K V G M R Y F H K T L N K Y H C P T V N C D K L W S L V S E Q T R K N Y A G K K E G P A P V I D C V Q A G Y Y K V L G K G L L P K Q P V I V K A R F F S R K A E D K I K S V G G T C V L T A 20 40 60 80 100 120 140 Expect = 2.80e-77 / Id = 73.65 Sequence RL27A
Match Name E-value Identity Description
RL27A 2.799e-77 73.65 60S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
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