TCONS_00073308-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073308-protein
Unique NameTCONS_00073308-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length148

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073308-protein ID=TCONS_00073308-protein|Name=TCONS_00073308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MTTRLKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGQHHHRTLMDKYHP
GYFGKVGMRYFHKTLNKYHCPTVNCDKLWSLVSEQTRKNYAGKKEGPAPV
IDCVQAGYYKVLGKGLLPKQPVIVKARFFSRKAEDKIKSVGGTCVLTA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045477XLOC_045477Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073308TCONS_00073308Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021131Ribosomal_L18e/L15P
IPR001196Ribosomal_L15_CS
IPR030878Ribosomal_L15
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
GO:0015934large ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021131Ribosomal protein L18e/L15PPFAMPF00828Ribosomal_L27Acoord: 28..145
e-value: 6.0E-23
score: 81.7
IPR021131Ribosomal protein L18e/L15PSUPERFAMILY52080Ribosomal proteins L15p and L18ecoord: 6..147
NoneNo IPR availableGENE3D3.100.10.10coord: 58..148
e-value: 8.5E-27
score: 92.8
NoneNo IPR availableGENE3D4.10.990.10coord: 6..49
e-value: 1.6E-20
score: 73.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40
IPR001196Ribosomal protein L15, conserved sitePROSITEPS00475RIBOSOMAL_L15coord: 110..141
IPR030878Ribosomal protein L15HAMAPMF_01341Ribosomal_L15coord: 1..147
score: 11.406

Blast
[Close]
BLAST of TCONS_00073308-protein vs. Swiss-Prot (Human)
Match: RL27A (60S ribosomal protein L27a OS=Homo sapiens GN=RPL27A PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.799e-77
Identity = 109/148 (73.65%), Postives = 123/148 (83.11%), Query Frame = 0 
Query:    1 MTTRLKKNRKKRGHVSAGHGRVGKHRKHPGGRGKAGGQHHHRTLMDKYHPGYFGKVGMRYFHKTLNKYHCPTVNCDKLWSLVSEQTRKNYAGKKEGPAPVIDCVQAGYYKVLGKGLLPKQPVIVKARFFSRKAEDKIKSVGGTCVLTA 148
            M +RL+K RK RGHVS GHGR+GKHRKHPGGRG AGG HHHR   DKYHPGYFGKVGM+++H   N+  CPTVN DKLW+LVSEQTR N A  K G AP+ID V++GYYKVLGKG LPKQPVIVKA+FFSR+AE+KIKSVGG CVL A
Sbjct:    1 MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00073308-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL27A2.799e-7773.6560S ribosomal protein L27a OS=Homo sapiens GN=RPL2... [more]
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