TCONS_00073304 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00073304
Unique Name	TCONS_00073304
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1487

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_9:134961..139181+
coding sequence from alignment at scaffold_9:134961..139181+

transcript sequence

>TCONS_00073304 ID=TCONS_00073304|Name=TCONS_00073304|organism=Clytia hemisphaerica|type=transcript|length=1487bp
TGGTcatttactttcactttcgttttcgttttagTATGAACGGCAACTTT
GATCGCACAGCAGgtactttttgatttctgaataAGAAACATAGCACAGA
GCGGCTTGTAAACGAACTTATGAAAACTCTCTACAGCTTCTTCAAAGGTG
TTTCCTCACACTCTGTATAATATCTTTTGCAACAAGCTTCAAAACCGAAA
GTGGATTTCTACACACCTGACCGCAAATAAATGATAATTTTTGTAAAGAT
ACACCAAGATTTTTCATATCGCAGCATTATGTAGAGTTATGAACGTTGAA
TATTGATGGAAATAAATTTTACGAGGAGAGCCATCAACTGCTTCATGCCA
GGTGGATGCCGTAAATCCACCGTAAAATGTCTCGAAACCGTGACTATTTG
AGTCGTAAACACCGAAGCAATAAACAACCTTCAAACTCCACTAACCATCG
ACATGACATTTTCGAAGAACGACAAAACCACCACGACCTTCAACAACTTG
AAAACGAGGTTCTTCCACTTGGAGCCGAGGCAGATGACAACGAAAGGAGA
CAGGTATTAGTGGATATGATATATGAGAGACATTTGAGCGGAGAAAAGAC
TGGGGAGAATGACTCAACCTCTTCTGACGAAGAACAGATCAATGAACAag
ATTATTGTTGGTTCTGGGACGAGTCAAAAAAgtcagatgacgtcatcgta
cAAAACTGTGGAACAGAAGCTTATTTTCATCCGGACTACAGCTGCGGGAC
GGCTGCGATCCGGGGCAACCGACAATTTCGTGAAGGCGAGGAACATTACT
GGGAAGTTCAAATGTCGAGTGCCGTGTATGGTACAGATATGATGATCGGT
ATCGGTGCCAGCAACGTCAACTTGGATCGCTACAAATCGCAATTCTGTTC
GCTCATCGGAAAAGATATCGACAGTTGGGGAATAAGTTACTTCGGAACAT
TACATCATAAcggaaaaactaaaaacttctGCAAAAAATTCGAAAGAGGG
GCTACTATAGGCTGTCACCTCGATCTTTGGAAAGGCACTTTATCCTTCTA
TAGGAACGGAGAACCTTTAGGAATAGCTTTCGATGGATTACTTGAAACTC
TACCTCTGCCCAATGGATTGAAAAAATACATCGGCTGGAGAATGGATTGG
GTATTCACATTAAACAACCCTCGAaaactttcttcttcttctgcgCCAAC
AAGTTCAACGAACtcaaacaaaatgaaagaaattgccGGTCCACAAAGAA
AGCGCATCCGAAGCAAACACAAAGACAAAGAGACTCCACTCACCGATGAA
GCAGACACCATctaacaaattttcatttctcactatttttacttttttta
cgaatctcaattttgtaaatttgatttttggatactaacaacattttttt
tctcatgattaacaaaattgattattttggtCTTCTGAGTACTTtccaaa
ccaaacaaaactaaacatagCAACATGTCATTTTCAT

Run BLAST on NCBI

protein sequence of TCONS_00073304-protein

>TCONS_00073304-protein ID=TCONS_00073304-protein|Name=TCONS_00073304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MSRNRDYLSRKHRSNKQPSNSTNHRHDIFEERQNHHDLQQLENEVLPLGA
EADDNERRQVLVDMIYERHLSGEKTGENDSTSSDEEQINEQDYCWFWDES
KKSDDVIVQNCGTEAYFHPDYSCGTAAIRGNRQFREGEEHYWEVQMSSAV
YGTDMMIGIGASNVNLDRYKSQFCSLIGKDIDSWGISYFGTLHHNGKTKN
FCKKFERGATIGCHLDLWKGTLSFYRNGEPLGIAFDGLLETLPLPNGLKK
YIGWRMDWVFTLNNPRKLSSSSAPTSSTNSNKMKEIAGPQRKRIRSKHKD
KETPLTDEADTI

Run BLAST on NCBI

transcript from alignment at scaffold_9:134961..139181+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00073304 ID=TCONS_00073304|Name=TCONS_00073304|organism=Clytia hemisphaerica|type=transcript|length=4221bp|location=Sequence derived from alignment at scaffold_9:134961..139181+ (Clytia hemisphaerica)
TGGTcatttactttcactttcgttttcgttttagTATGAACGGCAACTTT
GATCGCACAGCAGgtactttttgatttctgaataAGAAACATAGCACAGA
GCGGCTTGTAAACGAACTTATGAAAACTCTCTACAGCTTCTTCAAAGGTG
TTTCCTCACACTCTGTATAATATCTTTTGCAACAAGCTTCAAAACCGAAA
GTGGATTTCTACACACCTGACCGCAAATAAATGATAATTTTTGTAAAGAT
ACACCAAGATTTTTCATATCGCAGCATTATGTAGAGTTATGAACGTTGAA
TATTGATGGAAATAAATTTTACGAGGAGAGCCATCAACTGCTTCATGCCA
GGTGGATGCCGTAAATCCACCGTAAAATGTCTCGAAACCGTGACTATTTG
AGTCGTAAACACCGAAGCAATAAACAACCTTCAAACTCCACTAACCATCG
ACATGACATTTTCGAAGAACGACAAAACCACCACGACCTTCAACAACTTG
AAAACGAGGTTCTTCCACTTGGAGCCGAGGCAGATGACAACGAAAGGAGA
CAGGTATTAGTGGATATGATATATGAGAGACATTTGAGCGGAGAAAAGAC
TGGGGAGAATGACTCAACCTCTTCTGACGAAGAACAGATCAATGAACAag
gtttgttatttttcttccctaaaaaccaattttcttcCTCTCGTTTTCTC
ATTTCAGATTTTGAACTTCTTTAGCATAAGGGAGGTTGTTGTCCGGTCTA
TACGGAAAGCCAATACTTGTGTTCTATAGTATAATATTAAATCTGCCTAT
CATTTCTGGTCATGTTCCAAACGATGCTTCAAATTTTGTGAGAAATTTTA
TCTTCAATACTAAAACTTCTTTATTGACAGTAAATATAGAATTATTACAT
GAAAGTTATATTTCTTAGAGCGTTGCCCGTTGGAgtaaaaaacagcaaaa
aaacatgttttttgaCTCCAACGAGCTATCTTCTAGAGGATGTAATTTTC
GATCTAAGGACTTTAAGggaaaaataattatatataaTAGCTGAAATCAG
GCTAAAAGTatctttgtaccaaaaataaAGATgctcaaaaagtttgtttt
tttttctttgtgtttcatcttattttaaatatttttgagttacttttcca
aaaaaattatagtgctctgaatatttttcaactggTATATCCAAAAATGT
TAGAATTAAGTATTTGTTGAAAATTGGCAAACAAAAAATCCCGAAATTTG
ACCGGGTTTTGAGTTTTAGAAATTGTGGAAGGGAGTTTCGGATCAATCAT
TTTTGGCCGAAAGTTTATCACTTTTCCCAGAGAACGTCAGTGTATGTGTT
GTtcaagataaaataaaataaagagcCCTCTCTTTCAGATTATTGTTGGT
TCTGGGACGAGTCAAAAAAgtcagatgacgtcatcgtacAAAACTGTGGA
ACAGAAGCTTATTTTCATCCGGACTACAGCTGCGGGACGGCTGCGATCCG
GGGCAACCGACAATTTCGTGAAGGCGAGGAACATTACTGGGAAGTTCAAA
TGTCGAGTGCCGTGTATGGTACAGATATGGTATGAGTGGTTTTTGTTGGA
cctctttaaatgttcttagttATTAAGGATGAAAACAACAAATTCTCAGT
TGTTAGAAAAAGAGGTTTGTTTCTCAGAGCAGCGTGTTGCTTAGCTAAGA
GTTTTGAAACTATTCTTCCTTTGAATTCGAGCTTTTTTATGAATGATaag
cttttttgaatttctttattaCAAAATGATCCATAATTTCTTGGTTTGAA
TGCGGTTTGCAATTTCAGACATTACATGCAGAGTTTCGTTTCAGTTTCTT
CCAGACAATGTCCATCCCAACAAAGAGTAAGCAAAAAATCTACGCATGCG
TATTGAACTGAGCTTTTTTGAATGCATGTTCGCATGAATTTTCACATTCT
TGttttaaaggggaattaacgtATCCATTTTACCCTTTCAAAATGCATTC
acacaaaaaaaataatcattgaaaaaacttttttattcgcTGAATTAAat
aagatgaaaataaaaaaatttgtataatttAGTCTGCCGATAAAATTTTC
ACGTAAATGTATTTTCCTGAACAAGGCAtagattcaaaagaaagaaatgc
gaaaattgaattatttgcGAAATTAATCCGATTAGATACATTCCcaataa
ataaatcaatttcaaaattctggaaagcaaaaaaaattgtagcTTCCTTC
AACGTGAAATTGACAAAACTTGATCTATTGTTTGCCCTGTATAAATTAGA
TAATGTTGCTCACCAAATGGGAGGATTTAAACCGCACAGGCATGAATGAA
TAAGCATTAACTAACGATTTTTAGTCATTCCCTTTCTTGATCACTCTTGC
TTTTCAGATGATCGGTATCGGTGCCAGCAACGTCAACTTGGATCGCTACA
AATCGCAATTCTGTTCGCTCATCGGAAAAGATATCGACAGTTGGGGAATA
AGTTACTTCGGAACATTACATCATAAcggaaaaactaaaaacttctGCAA
AAAATTCGAAAGAGGGGCTACTATAGGCTGTCACCTCGATCTTTGGAAAG
GCACTTTATCCTTCTATAGGAACGGAGAACCTTTAGGAATAGCTTTCGAT
GGATTACTTGGTAAAGAGCTTTATCCAATGATCTCCTCAACCGCAGCAAG
AACGAAAATGAGACTTTTGTGTAGCCGAAAGACGAATTTTTCTTTACAAT
ATTTATGTTGCAAAGAGATCAGTAAGAATATCCCTTCATCGAGGAACAAC
AACGTTTTAGAAACTCTACCTCTGCCCAATGGATTGAAAAAATACATCGG
CTGGAGAATGGATTGGGTATTCACATTAAACAACCCTCGAaaactttctt
cttcttctgcgCCAACAAGTTCAACGAACtcaaacaaaatgaaagaaatt
gccGGTCCACAAAGAAAGCGCATCCGAAGGTATTGACTTTATTTACATTA
CCATGACAACGACGACATTACCATGACAACCGACCGACATCACCTTGACA
ACCGACCGACAAAAACAATGATTGACGAACGACAAAATTTGTCCGAAAAA
TTAGAgagtatattttttttaagaaacggAGTAGATAACTGATGATTTTT
TATGTaaattgttttatgtttttgtatattttttgacGAAAGAATTTCTA
TTGCACTGGTTGCAACTACACAGGAGACCCAACTCGACATCTTACATGGA
CGGTACTTTTATGACGAATTGACAATGGCACCAATTCGAAGATTTCAATG
GACTTTTTCATTAATTACATCACGagcgttttcaaaatattgctatggtt
attgattcccagaggagtCCACTTTATTCaaaaagtactttaggcgtaca
aactttcgcgagatcgtaaaatcgcgaaattcacgacatttactttcgcg
aatttcaggaaaaaatatttttcgcgagcacaaactttcgcgaatcgttg
gatgaaaatgaaaatttataaacgaaaatttgataaaaagtgATGCTCCT
TGAATCCGATAAAAACGGTTATACTTTGACTTTAAAAAGGCGTCAAAGGc
aataaatatgctgaaaattgTATATTCATTacgatttcaaagttttttag
attttcaattttttaaagaaaatttcgcgagcataaactttcgcgaatca
ccCTGTTAAGAAATttcacgagcataaactttcgcgaaaaaggccaaaat
tcgcgaaaatcgcgaaagtttctgcttgcgaaagtttgtacgtctaAAGT
AACATCATCTTTTGAAAGTCTGAAAATTTGCGAATTTTAGTTAATGTGTG
GGGCTCCGTTTATTCtaacctgttcttattttctaaAATCACTGAAATGA
ATCCAACCCTCGAATGTCATTTTCTGAATGTTGATTAACCGAACAAGTCC
TGAATGTGTGAAAAGTTTCTGTTGAActattccttttctttttccagCAA
ACACAAAGACAAAGAGACTCCACTCACCGATGAAGCAGACACCATctaac
aaattttcatttctcactatttttactttttttacgaatctcaattttgt
aaatttgatttttggatactaacaacattttttttctcatgattaacaaa
attgattattttggtCTTCTGAGTACTTtccaaaccaaacaaaactaaac
atagCAACATGTCATTTTCAT

Coding sequence (CDS) from alignment at scaffold_9:134961..139181+

>TCONS_00073304 ID=TCONS_00073304|Name=TCONS_00073304|organism=Clytia hemisphaerica|type=CDS|length=4695bp|location=Sequence derived from alignment at scaffold_9:134961..139181+ (Clytia hemisphaerica)
ATGTCTCGAAACCGTGACTATTTGAGTCGTAAACACCGAAGCAATAAACA
ACCTTCAAACTCCACTAACCATCGACATGACATTTTCGAAGAACGACAAA
ACCACCACGACCTTCAACAACTTGAAAACGAGGTTCTTCCACTTGGAGCC
GAGGCAGATGACAACGAAAGGAGACAGGTATTAGTGGATATGATATATGA
GAGACATTTGAGCGGAGAAAAGACTGGGGAGAATGACTCAACCTCTTCTG
ACGAAGAACAGATCAATGAACAagATTATTGTTGGTTCTGGGACGAGTCA
AAAAAgtcagatgacgtcatcgtacAAAACTGTGGAACAGAAGCTTATTT
TCATCCGGACTACAGCTGCGGGACGGCTGCGATCCGGGGCAACCGACAAT
TTCGTGAAGGCGAGGAACATTACTGGGAAGTTCAAATGTCGAGTGCCGTG
TATGGTACAGATATGATGATCGGTATCGGTGCCAGCAACGTCAACTTGGA
TCGCTACAAATCGCAATTCTGTTCGCTCATCGGAAAAGATATCGACAGTT
GGGGAATAAGTTACTTCGGAACATTACATCATAAcggaaaaactaaaaac
ttctGCAAAAAATTCGAAAGAGGGGCTACTATAGGCTGTCACCTCGATCT
TTGGAAAGGCACTTTATCCTTCTATAGGAACGGAGAACCTTTAGGAATAG
CTTTCGATGGATTACTTGAAACTCTACCTCTGCCCAATGGATTGAAAAAA
TACATCGGCTGGAGAATGGATTGGGTATTCACATTAAACAACCCTCGAaa
actttcttcttcttctgcgCCAACAAGTTCAACGAACtcaaacaaaatga
aagaaattgccGGTCCACAAAGAAAGCGCATCCGAAGCAAACACAAAGAC
AAAGAGACTCCACTCACCGATGAAGCAGACACCATctaaATGTCTCGAAA
CCGTGACTATTTGAGTCGTAAACACCGAAGCAATAAACAACCTTCAAACT
CCACTAACCATCGACATGACATTTTCGAAGAACGACAAAACCACCACGAC
CTTCAACAACTTGAAAACGAGGTTCTTCCACTTGGAGCCGAGGCAGATGA
CAACGAAAGGAGACAGGTATTAGTGGATATGATATATGAGAGACATTTGA
GCGGAGAAAAGACTGGGGAGAATGACTCAACCTCTTCTGACGAAGAACAG
ATCAATGAACAagATTATTGTTGGTTCTGGGACGAGTCAAAAAAgtcaga
tgacgtcatcgtacAAAACTGTGGAACAGAAGCTTATTTTCATCCGGACT
ACAGCTGCGGGACGGCTGCGATCCGGGGCAACCGACAATTTCGTGAAGGC
GAGGAACATTACTGGGAAGTTCAAATGTCGAGTGCCGTGTATGGTACAGA
TATGATGATCGGTATCGGTGCCAGCAACGTCAACTTGGATCGCTACAAAT
CGCAATTCTGTTCGCTCATCGGAAAAGATATCGACAGTTGGGGAATAAGT
TACTTCGGAACATTACATCATAAcggaaaaactaaaaacttctGCAAAAA
ATTCGAAAGAGGGGCTACTATAGGCTGTCACCTCGATCTTTGGAAAGGCA
CTTTATCCTTCTATAGGAACGGAGAACCTTTAGGAATAGCTTTCGATGGA
TTACTTGAAACTCTACCTCTGCCCAATGGATTGAAAAAATACATCGGCTG
GAGAATGGATTGGGTATTCACATTAAACAACCCTCGAaaactttcttctt
cttctgcgCCAACAAGTTCAACGAACtcaaacaaaatgaaagaaattgcc
GGTCCACAAAGAAAGCGCATCCGAAGCAAACACAAAGACAAAGAGACTCC
ACTCACCGATGAAGCAGACACCATctaaATGTCTCGAAACCGTGACTATT
TGAGTCGTAAACACCGAAGCAATAAACAACCTTCAAACTCCACTAACCAT
CGACATGACATTTTCGAAGAACGACAAAACCACCACGACCTTCAACAACT
TGAAAACGAGGTTCTTCCACTTGGAGCCGAGGCAGATGACAACGAAAGGA
GACAGGTATTAGTGGATATGATATATGAGAGACATTTGAGCGGAGAAAAG
ACTGGGGAGAATGACTCAACCTCTTCTGACGAAGAACAGATCAATGAACA
agATTATTGTTGGTTCTGGGACGAGTCAAAAAAgtcagatgacgtcatcg
tacAAAACTGTGGAACAGAAGCTTATTTTCATCCGGACTACAGCTGCGGG
ACGGCTGCGATCCGGGGCAACCGACAATTTCGTGAAGGCGAGGAACATTA
CTGGGAAGTTCAAATGTCGAGTGCCGTGTATGGTACAGATATGATGATCG
GTATCGGTGCCAGCAACGTCAACTTGGATCGCTACAAATCGCAATTCTGT
TCGCTCATCGGAAAAGATATCGACAGTTGGGGAATAAGTTACTTCGGAAC
ATTACATCATAAcggaaaaactaaaaacttctGCAAAAAATTCGAAAGAG
GGGCTACTATAGGCTGTCACCTCGATCTTTGGAAAGGCACTTTATCCTTC
TATAGGAACGGAGAACCTTTAGGAATAGCTTTCGATGGATTACTTGAAAC
TCTACCTCTGCCCAATGGATTGAAAAAATACATCGGCTGGAGAATGGATT
GGGTATTCACATTAAACAACCCTCGAaaactttcttcttcttctgcgCCA
ACAAGTTCAACGAACtcaaacaaaatgaaagaaattgccGGTCCACAAAG
AAAGCGCATCCGAAGCAAACACAAAGACAAAGAGACTCCACTCACCGATG
AAGCAGACACCATctaaATGTCTCGAAACCGTGACTATTTGAGTCGTAAA
CACCGAAGCAATAAACAACCTTCAAACTCCACTAACCATCGACATGACAT
TTTCGAAGAACGACAAAACCACCACGACCTTCAACAACTTGAAAACGAGG
TTCTTCCACTTGGAGCCGAGGCAGATGACAACGAAAGGAGACAGGTATTA
GTGGATATGATATATGAGAGACATTTGAGCGGAGAAAAGACTGGGGAGAA
TGACTCAACCTCTTCTGACGAAGAACAGATCAATGAACAagATTATTGTT
GGTTCTGGGACGAGTCAAAAAAgtcagatgacgtcatcgtacAAAACTGT
GGAACAGAAGCTTATTTTCATCCGGACTACAGCTGCGGGACGGCTGCGAT
CCGGGGCAACCGACAATTTCGTGAAGGCGAGGAACATTACTGGGAAGTTC
AAATGTCGAGTGCCGTGTATGGTACAGATATGATGATCGGTATCGGTGCC
AGCAACGTCAACTTGGATCGCTACAAATCGCAATTCTGTTCGCTCATCGG
AAAAGATATCGACAGTTGGGGAATAAGTTACTTCGGAACATTACATCATA
AcggaaaaactaaaaacttctGCAAAAAATTCGAAAGAGGGGCTACTATA
GGCTGTCACCTCGATCTTTGGAAAGGCACTTTATCCTTCTATAGGAACGG
AGAACCTTTAGGAATAGCTTTCGATGGATTACTTGAAACTCTACCTCTGC
CCAATGGATTGAAAAAATACATCGGCTGGAGAATGGATTGGGTATTCACA
TTAAACAACCCTCGAaaactttcttcttcttctgcgCCAACAAGTTCAAC
GAACtcaaacaaaatgaaagaaattgccGGTCCACAAAGAAAGCGCATCC
GAAGCAAACACAAAGACAAAGAGACTCCACTCACCGATGAAGCAGACACC
ATctaaATGTCTCGAAACCGTGACTATTTGAGTCGTAAACACCGAAGCAA
TAAACAACCTTCAAACTCCACTAACCATCGACATGACATTTTCGAAGAAC
GACAAAACCACCACGACCTTCAACAACTTGAAAACGAGGTTCTTCCACTT
GGAGCCGAGGCAGATGACAACGAAAGGAGACAGGTATTAGTGGATATGAT
ATATGAGAGACATTTGAGCGGAGAAAAGACTGGGGAGAATGACTCAACCT
CTTCTGACGAAGAACAGATCAATGAACAagATTATTGTTGGTTCTGGGAC
GAGTCAAAAAAgtcagatgacgtcatcgtacAAAACTGTGGAACAGAAGC
TTATTTTCATCCGGACTACAGCTGCGGGACGGCTGCGATCCGGGGCAACC
GACAATTTCGTGAAGGCGAGGAACATTACTGGGAAGTTCAAATGTCGAGT
GCCGTGTATGGTACAGATATGATGATCGGTATCGGTGCCAGCAACGTCAA
CTTGGATCGCTACAAATCGCAATTCTGTTCGCTCATCGGAAAAGATATCG
ACAGTTGGGGAATAAGTTACTTCGGAACATTACATCATAAcggaaaaact
aaaaacttctGCAAAAAATTCGAAAGAGGGGCTACTATAGGCTGTCACCT
CGATCTTTGGAAAGGCACTTTATCCTTCTATAGGAACGGAGAACCTTTAG
GAATAGCTTTCGATGGATTACTTGAAACTCTACCTCTGCCCAATGGATTG
AAAAAATACATCGGCTGGAGAATGGATTGGGTATTCACATTAAACAACCC
TCGAaaactttcttcttcttctgcgCCAACAAGTTCAACGAACtcaaaca
aaatgaaagaaattgccGGTCCACAAAGAAAGCGCATCCGAAGCAAACAC
AAAGACAAAGAGACTCCACTCACCGATGAAGCAGACACCATctaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045474	XLOC_045474	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00073304-protein	TCONS_00073304-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:134961..139181 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0555207	0.0270707	0.125727	0.092253	0.299491	0.236662	29.2661	36.0859	21.3579	18.1681	16.2	12.3132	60.9633	61.9689	38.8564	58.1416	40.1162	40.947	9.82679	10.9933	39.4284	37.9006	24.2541	28.8508	38.5678	47.1358	5.93813	3.20929	0.123247	0.188354

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003877	SPRY_dom
IPR001870	B30.2/SPRY
IPR013320	ConA-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00073304 vs. Swiss-Prot (Human)
Match: SPSB3 (SPRY domain-containing SOCS box protein 3 OS=Homo sapiens GN=SPSB3 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 2.997e-48
Identity = 93/250 (37.20%), Postives = 135/250 (54.00%), Query Frame = 2

Query:  659 WFWDESKKSDDVIVQNCGTEAYFHPDYSCGTAAIRGNRQFREGEEHYWEVQMSSAVYGTDMMIGIGASNVNLDRYKSQFCSLIGKDIDSWGISYFGTLHHNGKTKNFCKKFERGATIGCHLDLWKGTLSFYRNGEPLGIAFDGL------------------------------------------------LETLPLPNGLKKYIGWRMDWVFTLN-NPRKLXXXXXXXXXXXXXKMKEIAGPQRKRIR 1261
            W WD+  KS   ++     +  FH +YSCGTAAIRG ++  EG+ H+WE++M+S VYGTDMM+GIG S+V+LD+Y+  FCSL+G+D DSWG+SY G LHH G   +F  +F +G+ IG HLD W GTL+F++N + +G+A   L                                                LE LPLP GLK+ +  ++ WV +++ + RK   S    +++     +E    QRKR R
Sbjct:  105 WVWDDLNKSSATLLSCDNRKVSFHMEYSCGTAAIRGTKELGEGQ-HFWEIKMTSPVYGTDMMVGIGTSDVDLDKYRHTFCSLLGRDEDSWGLSYTGLLHHKGDKTSFSSRFGQGSIIGVHLDTWHGTLTFFKNRKCIGVAATKLQNKRFYPMVCSTAARSSMKVTRSCASATSLQYLCCHRLRQLRPDSGDTLEGLPLPPGLKQVLHNKLGWVLSMSCSRRKAPVSDPQAATSAHPSSREPRPCQRKRCR 353

The following BLAST results are available for this feature:

BLAST of TCONS_00073304 vs. Swiss-Prot (Human)

BLAST of TCONS_00073304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPSB3	2.997e-48	37.20	SPRY domain-containing SOCS box protein 3 OS=Homo ...	[more]

You are here

TCONS_00073304 (transcript) - C. hemisphaerica