TCONS_00073236 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073236
Unique NameTCONS_00073236
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073236 ID=TCONS_00073236|Name=TCONS_00073236|organism=Clytia hemisphaerica|type=transcript|length=630bp
GTGACTTTCAACATATCGAATAACAGAATACCGAATTAGAGAGTATCAAC
TGTATTCACTCAACCAAACCTAAAAAATACACTCGTTATAAAATCTTTAT
GAAACTCTTTATACATAATCTATGTAGCATTGTACTATAAATTGAACCAA
CTTTGCTGTTGCTGTCCACTATCAGATTGATTCTCAGGAACATTGCTCTC
ATTATCATCAATATCATCTAAATCATCGTCAACAATTTCAGCTTTAGCGT
CCGGTGGGAAAACGTCCGGAAATTTGAAACGACCttctttcaaaataaca
taAGCCACTTTGATGTCTTCCTGTTTATATTGTATAGCATCGTTCCTGTA
AACTTTGGTTTTCACTTTTCCCGCTTGTATCCTAGTATTCACTTTCGCTA
CCGGTACATTGTAGATTTTCTCCATATAgttttttatatcaattttggAC
ATATCTAGGGGTACGTGTAATTGTACAGTATCGTCCGGTAAATCACGACC
AGGTCGGACAACTTTGACAAACCATTTTGGAAGAAATATTCGAGCTTGAA
GTACAGGATTTCGAACACGGTTACGATATGCCATGtgatattttgtattt
attttgtatAAATGCTAATTTTTATCTAGA
Run BLAST on NCBI

protein sequence of TCONS_00073236-protein

>TCONS_00073236-protein ID=TCONS_00073236-protein|Name=TCONS_00073236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAYRNRVRNPVLQARIFLPKWFVKVVRPGRDLPDDTVQLHVPLDMSKIDI
KNYMEKIYNVPVAKVNTRIQAGKVKTKVYRNDAIQYKQEDIKVAYVILKE
GRFKFPDVFPPDAKAEIVDDDLDDIDDNESNVPENQSDSGQQQQSWFNL
Run BLAST on NCBI

transcript from alignment at scaffold_88:168579..169208

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073236 ID=TCONS_00073236|Name=TCONS_00073236|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at scaffold_88:168579..169208 (Clytia hemisphaerica)
TCTAGATAAAAATTAGCATTTatacaaaataaatacaaaatatcaCATGG
CATATCGTAACCGTGTTCGAAATCCTGTACTTCAAGCTCGAATATTTCTT
CCAAAATGGTTTGTCAAAGTTGTCCGACCTGGTCGTGATTTACCGGACGA
TACTGTACAATTACACGTACCCCTAGATATGTccaaaattgatataaaaa
acTATATGGAGAAAATCTACAATGTACCGGTAGCGAAAGTGAATACTAGG
ATACAAGCGGGAAAAGTGAAAACCAAAGTTTACAGGAACGATGCTATACA
ATATAAACAGGAAGACATCAAAGTGGCTtatgttattttgaaagaaGGTC
GTTTCAAATTTCCGGACGTTTTCCCACCGGACGCTAAAGCTGAAATTGTT
GACGATGATTTAGATGATATTGATGATAATGAGAGCAATGTTCCTGAGAA
TCAATCTGATAGTGGACAGCAACAGCAAAGTTGGTTCAATTTATAGTACA
ATGCTACATAGATTATGTATAAAGAGTTTCATAAAGATTTTATAACGAGT
GTATTTTTTAGGTTTGGTTGAGTGAATACAGTTGATACTCTCTAATTCGG
TATTCTGTTATTCGATATGTTGAAAGTCAC

Coding sequence (CDS) from alignment at scaffold_88:168579..169208

>TCONS_00073236 ID=TCONS_00073236|Name=TCONS_00073236|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_88:168579..169208 (Clytia hemisphaerica)
ATGGCATATCGTAACCGTGTTCGAAATCCTGTACTTCAAGCTCGAATATT
TCTTCCAAAATGGTTTGTCAAAGTTGTCCGACCTGGTCGTGATTTACCGG
ACGATACTGTACAATTACACGTACCCCTAGATATGTccaaaattgatata
aaaaacTATATGGAGAAAATCTACAATGTACCGGTAGCGAAAGTGAATAC
TAGGATACAAGCGGGAAAAGTGAAAACCAAAGTTTACAGGAACGATGCTA
TACAATATAAACAGGAAGACATCAAAGTGGCTtatgttattttgaaagaa
GGTCGTTTCAAATTTCCGGACGTTTTCCCACCGGACGCTAAAGCTGAAAT
TGTTGACGATGATTTAGATGATATTGATGATAATGAGAGCAATGTTCCTG
AGAATCAATCTGATAGTGGACAGCAACAGCAAAGTTGGTTCAATTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045431XLOC_045431Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073236-proteinTCONS_00073236-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073236-exon-scaffold_88-1491911889:168579..169208TCONS_00073236-exon-scaffold_88-1491911889:168579..169208Clytia hemisphaericaexon
TCONS_00073236-exon-scaffold_88-1510915933:168579..169208TCONS_00073236-exon-scaffold_88-1510915933:168579..169208Clytia hemisphaericaexon
TCONS_00073236-exon-scaffold_88-1575043694:168579..169208TCONS_00073236-exon-scaffold_88-1575043694:168579..169208Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:168579..169208 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
49.9722	50.2921	17.0793	14.0957	39.7751	27.0305	29.6859	26.1687	29.8254	25.2448	18.0999	18.0156	11.097	11.9318	15.6474	16.484	37.8303	35.014	3.94157	6.65555	17.1917	19.5529	49.2775	45.0639	23.5241	24.1439	15.9461	10.2355	27.6859	31.0664
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013025Ribosomal_L25/23
IPR012678Ribosomal_L23/L15e_core_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00073236 vs. Swiss-Prot (Human)
Match: RM23 (39S ribosomal protein L23, mitochondrial OS=Homo sapiens GN=MRPL23 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.539e-27
Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = -2 
Query:  138 QARIFLPKWFVKVVRPGRDLPDDTVQLHVPLDMSKIDIKNYMEKIYNVPVAKVNTRIQAGKVKTKVYRNDAIQYKQEDIKVAYVILKEGR-FKFPDVFPP-DAKAEIVXXXXXXXXDNESNVPENQSDSGQQQ-QSWFNL 548
            Q R+F   +F+++VRPG   P+DTVQ  +P++M+++D++NY+E IYNVPVA V TR+Q G  K + +RN  ++ K+ D KVAYV L  G+ F FPD+FP  D   E    D       E       SD  +    SWF L
Sbjct:   16 QLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRN--VRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
The following BLAST results are available for this feature:
BLAST of TCONS_00073236 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM233.539e-2742.1439S ribosomal protein L23, mitochondrial OS=Homo s... [more]
back to top