TCONS_00073236-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073236-protein
Unique NameTCONS_00073236-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073236-protein ID=TCONS_00073236-protein|Name=TCONS_00073236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAYRNRVRNPVLQARIFLPKWFVKVVRPGRDLPDDTVQLHVPLDMSKIDI
KNYMEKIYNVPVAKVNTRIQAGKVKTKVYRNDAIQYKQEDIKVAYVILKE
GRFKFPDVFPPDAKAEIVDDDLDDIDDNESNVPENQSDSGQQQQSWFNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045431XLOC_045431Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073236TCONS_00073236Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013025Ribosomal_L25/23
IPR012678Ribosomal_L23/L15e_core_dom
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.330coord: 23..107
e-value: 1.8E-17
score: 62.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..149
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 36..101
e-value: 2.3E-14
score: 53.4
IPR012678Ribosomal protein L23/L15e core domainSUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 13..101

Blast
[Close]
BLAST of TCONS_00073236-protein vs. Swiss-Prot (Human)
Match: RM23 (39S ribosomal protein L23, mitochondrial OS=Homo sapiens GN=MRPL23 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.295e-31
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 0 
Query:   13 QARIFLPKWFVKVVRPGRDLPDDTVQLHVPLDMSKIDIKNYMEKIYNVPVAKVNTRIQAGKVKTKVYRNDAIQYKQEDIKVAYVILKEGR-FKFPDVFP-----PDAKAEIVDDDLDDIDDNESNVPENQSDSGQQQQSWFNL 149
            Q R+F   +F+++VRPG   P+DTVQ  +P++M+++D++NY+E IYNVPVA V TR+Q G  K + +RN  ++ K+ D KVAYV L  G+ F FPD+FP     P+  A    DDL  + + E    ++         SWF L
Sbjct:   16 QLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRN--VRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAA---DDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
The following BLAST results are available for this feature:
BLAST of TCONS_00073236-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM239.295e-3141.2639S ribosomal protein L23, mitochondrial OS=Homo s... [more]
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