Sequence
The following sequences are available for this feature:
polypeptide sequence
>TCONS_00073236-protein ID=TCONS_00073236-protein|Name=TCONS_00073236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following
gene feature:
This polypeptide derives from the following
transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
Term Definition
IPR013025 Ribosomal_L25/23 IPR012678 Ribosomal_L23/L15e_core_dom
Vocabulary: Biological Process
Term Definition
GO:0006412 translation
Vocabulary: Cellular Component
Term Definition
GO:0005840 ribosome GO:0005622 intracellular
Vocabulary: Molecular Function
Term Definition
GO:0003735 structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category
Term Accession
Term Name
biological_process
GO:0006412 translation
cellular_component
GO:0005622 intracellular
cellular_component
GO:0005840 ribosome
molecular_function
GO:0003735 structural constituent of ribosome
InterPro
Analysis Name:
InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
M A Y R N R V R N P V L Q A R I F L P K W F V K V V R P G R D L P D D T V Q L H V P L D M S K I D I K N Y M E K I Y N V P V A K V N T R I Q A G K V K T K V Y R N D A I Q Y K Q E D I K V A Y V I L K E G R F K F P D V F P P D A K A E I V D D D L D D I D D N E S N V P E N Q S D S G Q Q Q Q S W F N L 20 40 60 80 100 120 140 Expect = 1.8E-17 / Score = 62.9 Score = Expect = 2.3E-14 / Score = 53.4 Score = Sequence G3DSA:3.30.70.330 mobidb-lite PF00276 SSF54189
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available GENE3D 3.30.70.330 coord: 23..107 None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 119..149 IPR013025 Ribosomal protein L25/L23 PFAM PF00276 Ribosomal_L23 coord: 36..101 IPR012678 Ribosomal protein L23/L15e core domain SUPERFAMILY 54189 Ribosomal proteins S24e, L23 and L15e coord: 13..101
Blast
BLAST of TCONS_00073236-protein vs. Swiss-Prot (Human)
Match:
RM23 (39S ribosomal protein L23, mitochondrial OS=Homo sapiens GN=MRPL23 PE=1 SV=1)
HSP 1 Score: 107.842 bits (268), Expect = 9.295e-31
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 0
Query: 13 QARIFLPKWFVKVVRPGRDLPDDTVQLHVPLDMSKIDIKNYMEKIYNVPVAKVNTRIQAGKVKTKVYRNDAIQYKQEDIKVAYVILKEGR-FKFPDVFP-----PDAKAEIVDDDLDDIDDNESNVPENQSDSGQQQQSWFNL 149
Q R+F +F+++VRPG P+DTVQ +P++M+++D++NY+E IYNVPVA V TR+Q G K + +RN ++ K+ D KVAYV L G+ F FPD+FP P+ A DDL + + E ++ SWF L
Sbjct: 16 QLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRN--VRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAA---DDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
The following BLAST results are available for this feature:
BLAST of TCONS_00073236-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (
Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens) )
Total hits: 1
M A Y R N R V R N P V L Q A R I F L P K W F V K V V R P G R D L P D D T V Q L H V P L D M S K I D I K N Y M E K I Y N V P V A K V N T R I Q A G K V K T K V Y R N D A I Q Y K Q E D I K V A Y V I L K E G R F K F P D V F P P D A K A E I V D D D L D D I D D N E S N V P E N Q S D S G Q Q Q Q S W F N L 20 40 60 80 100 120 140 Expect = 9.29e-31 / Id = 41.26 Sequence RM23
Match Name E-value Identity Description
RM23 9.295e-31 41.26 39S ribosomal protein L23, mitochondrial OS=Homo s... [more]
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