Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073236 ID=TCONS_00073236|Name=TCONS_00073236|organism=Clytia hemisphaerica|type=transcript|length=630bp
GTGACTTTCAACATATCGAATAACAGAATACCGAATTAGAGAGTATCAAC
TGTATTCACTCAACCAAACCTAAAAAATACACTCGTTATAAAATCTTTAT
GAAACTCTTTATACATAATCTATGTAGCATTGTACTATAAATTGAACCAA
CTTTGCTGTTGCTGTCCACTATCAGATTGATTCTCAGGAACATTGCTCTC
ATTATCATCAATATCATCTAAATCATCGTCAACAATTTCAGCTTTAGCGT
CCGGTGGGAAAACGTCCGGAAATTTGAAACGACCttctttcaaaataaca
taAGCCACTTTGATGTCTTCCTGTTTATATTGTATAGCATCGTTCCTGTA
AACTTTGGTTTTCACTTTTCCCGCTTGTATCCTAGTATTCACTTTCGCTA
CCGGTACATTGTAGATTTTCTCCATATAgttttttatatcaattttggAC
ATATCTAGGGGTACGTGTAATTGTACAGTATCGTCCGGTAAATCACGACC
AGGTCGGACAACTTTGACAAACCATTTTGGAAGAAATATTCGAGCTTGAA
GTACAGGATTTCGAACACGGTTACGATATGCCATGtgatattttgtattt
attttgtatAAATGCTAATTTTTATCTAGA Run BLAST on NCBI protein sequence of TCONS_00073236-protein >TCONS_00073236-protein ID=TCONS_00073236-protein|Name=TCONS_00073236-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAYRNRVRNPVLQARIFLPKWFVKVVRPGRDLPDDTVQLHVPLDMSKIDI
KNYMEKIYNVPVAKVNTRIQAGKVKTKVYRNDAIQYKQEDIKVAYVILKE
GRFKFPDVFPPDAKAEIVDDDLDDIDDNESNVPENQSDSGQQQQSWFNL Run BLAST on NCBI transcript from alignment at scaffold_88:168579..169208 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073236 ID=TCONS_00073236|Name=TCONS_00073236|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at scaffold_88:168579..169208 (Clytia hemisphaerica)
TCTAGATAAAAATTAGCATTTatacaaaataaatacaaaatatcaCATGG
CATATCGTAACCGTGTTCGAAATCCTGTACTTCAAGCTCGAATATTTCTT
CCAAAATGGTTTGTCAAAGTTGTCCGACCTGGTCGTGATTTACCGGACGA
TACTGTACAATTACACGTACCCCTAGATATGTccaaaattgatataaaaa
acTATATGGAGAAAATCTACAATGTACCGGTAGCGAAAGTGAATACTAGG
ATACAAGCGGGAAAAGTGAAAACCAAAGTTTACAGGAACGATGCTATACA
ATATAAACAGGAAGACATCAAAGTGGCTtatgttattttgaaagaaGGTC
GTTTCAAATTTCCGGACGTTTTCCCACCGGACGCTAAAGCTGAAATTGTT
GACGATGATTTAGATGATATTGATGATAATGAGAGCAATGTTCCTGAGAA
TCAATCTGATAGTGGACAGCAACAGCAAAGTTGGTTCAATTTATAGTACA
ATGCTACATAGATTATGTATAAAGAGTTTCATAAAGATTTTATAACGAGT
GTATTTTTTAGGTTTGGTTGAGTGAATACAGTTGATACTCTCTAATTCGG
TATTCTGTTATTCGATATGTTGAAAGTCAC Coding sequence (CDS) from alignment at scaffold_88:168579..169208 >TCONS_00073236 ID=TCONS_00073236|Name=TCONS_00073236|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_88:168579..169208 (Clytia hemisphaerica)
ATGGCATATCGTAACCGTGTTCGAAATCCTGTACTTCAAGCTCGAATATT
TCTTCCAAAATGGTTTGTCAAAGTTGTCCGACCTGGTCGTGATTTACCGG
ACGATACTGTACAATTACACGTACCCCTAGATATGTccaaaattgatata
aaaaacTATATGGAGAAAATCTACAATGTACCGGTAGCGAAAGTGAATAC
TAGGATACAAGCGGGAAAAGTGAAAACCAAAGTTTACAGGAACGATGCTA
TACAATATAAACAGGAAGACATCAAAGTGGCTtatgttattttgaaagaa
GGTCGTTTCAAATTTCCGGACGTTTTCCCACCGGACGCTAAAGCTGAAAT
TGTTGACGATGATTTAGATGATATTGATGATAATGAGAGCAATGTTCCTG
AGAATCAATCTGATAGTGGACAGCAACAGCAAAGTTGGTTCAATTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073236-exon-scaffold_88-1491911889:168579..169208 | TCONS_00073236-exon-scaffold_88-1491911889:168579..169208 | Clytia hemisphaerica | exon |
| TCONS_00073236-exon-scaffold_88-1510915933:168579..169208 | TCONS_00073236-exon-scaffold_88-1510915933:168579..169208 | Clytia hemisphaerica | exon |
| TCONS_00073236-exon-scaffold_88-1575043694:168579..169208 | TCONS_00073236-exon-scaffold_88-1575043694:168579..169208 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:168579..169208 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013025 | Ribosomal_L25/23 |
| IPR012678 | Ribosomal_L23/L15e_core_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00073236 vs. Swiss-Prot (Human)
Match: RM23 (39S ribosomal protein L23, mitochondrial OS=Homo sapiens GN=MRPL23 PE=1 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 3.539e-27 Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = -2 Query: 138 QARIFLPKWFVKVVRPGRDLPDDTVQLHVPLDMSKIDIKNYMEKIYNVPVAKVNTRIQAGKVKTKVYRNDAIQYKQEDIKVAYVILKEGR-FKFPDVFPP-DAKAEIVXXXXXXXXDNESNVPENQSDSGQQQ-QSWFNL 548
Q R+F +F+++VRPG P+DTVQ +P++M+++D++NY+E IYNVPVA V TR+Q G K + +RN ++ K+ D KVAYV L G+ F FPD+FP D E D E SD + SWF L
Sbjct: 16 QLRVFRTNFFIQLVRPGVAQPEDTVQFRIPMEMTRVDLRNYLEGIYNVPVAAVRTRVQHGSNKRRDHRN--VRIKKPDYKVAYVQLAHGQTFTFPDLFPEKDESPEGSAADDLYSMLEEERQQRQSSDPRRGGVPSWFGL 153
The following BLAST results are available for this feature:
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