|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073218 ID=TCONS_00073218|Name=TCONS_00073218|organism=Clytia hemisphaerica|type=transcript|length=1198bp ACACAATCTGGGAGATGTAATATACAGAAATGTTTACCTAATGAAGCCTG CACTTGGGCATACACAAATTGGAATGATGACGGAAAAGGCGGCGCTGTTT ATTTGGACAGGCACGACGTTCGATGCAACAACGGTCAATATATCAAATAT ATGAAATTAGAAAGAAAAAAGGCAGGCTGGTTCAATTATCAAATACGTTA TAAGTATATATGTTGTCAAAATATGGCTTCATGTTCAAGTGTTACTCATT CGACTTTGGATACCTATAATGGTGGTTTTCAAGGAAACGCTGTCTACTTC GATCGCCAAACAGTCAGTTGTGGCAGAAATGCTTTGCAACGGGTCAAACT TGTGAGACATGGCAACAATATTCGATATGATTTTACATGCTGCAAAAAAA CTGATTCTACACTAACCACATCATGTTATGCGTCAAATACAGGTTTCAAC GATGATGGTCGTGGCAATGCAGCTTACCTTGATCGACACGCTATAAGCTG CAGTAACAATTACTATCTTACATATTTTCACTTGAAACGGAATTCTGCTC ACAACAAATATCGTTATGATTACCAATGTTGTAAAATTAATCCACCATCA CCAAGAAACTAAAGAATTTCTGAAGAGAAATTAGGGATAAAAATAGAAGT caggaaaataaataaaacataattttattaggaaaatatataataaatca TTTCCCTAGCGAAAGTATTTTTCAGTATTTGTTGTTCGCATATATGTAAT TGAAATGCGACTAATTGTGAAGATTCGAAATCTGCGGATTTGATAGGTGT acaatagcgcaccgcgctgaatctaaaaataaattttatttttgacataa tcaaaaaataaattNTTGTACAATTCATAACTGGGTATATCTGGGAGGCA ATTACGAGGCAGGTAGATCAGCTCAAAATTACATATATCTGCGCGTGTGG TTTGATTGGGCGTGATTGTTTTGACTAAAACtgcaaaaacatttcaaatt tgtttCGTTTTATTAGGTCACCTACTACATAGCCATCCTAAAcatttaat aattttatttatcaaaaatgtaTTCGTTTATTTTATAACTATTTTAAATA TATGATAACAATAGTTGACAGTTGGAATATTTGCagtcctctttttaagc agctTTGACAATTATTGGAAAACGAATGAATTGTTTAGATGGAGGCTC Run BLAST on NCBI transcript from alignment at scaffold_88:284597..289375- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073218 ID=TCONS_00073218|Name=TCONS_00073218|organism=Clytia hemisphaerica|type=transcript|length=4779bp|location=Sequence derived from alignment at scaffold_88:284597..289375- (Clytia hemisphaerica) ACACAATCTGGGAGATGTAATATACAGAAATGTTTACGTGAGTCCTGCAT
TACATCATTTTTCATAAGAGCTCGGGTAAGTTATGGCATGTCTCGATGTC
TCGAAAACTGAAAATTACCATAATTTTTAGATCGCATTAGTCGGTACAAA
ACGGACCAAACAAGAATAAAGCGTACTATGATGAAGTTTCCAACCTGGTG
TGTAACCTAATATTGTTTTTTTTCGCTGATTTTTTATTATGACGTCACAA
AAACTGGAAATTTAATTTCTCAAGAATTGTTTATCCAATTGTCGTCAAAC
TTTCACCAAAGATGTATCTCACTAAAGTCGATTATTGAAAAAGAAAATTT
TTCGAAATTTTGATGACATCAGCAGAAATTAGTAAAAACGAAAAGTCCTA
TTTTTTGCTGACGTAATCAGAATTTAGACAGAAAATTAGGTTACACATCA
GGTTAGAAACTACATCATAGTACTCTTCATGTTCAGTCATTATATTGGTC
GTTTTCTGCCGGCTAATGCGATCTAAAAATTATGGTAATTTTAAGACATG
TCATAACTTACCCGAGAACAATTTTATAAAGAGCACGAGGCTGAAAATTG
GACAAACCTAAGAACAAATTAAGAATATCTGAGCCTCAGATTTCAGACAG
CACTGGTTTAAGAGATTTTAACTGATTTTAAGCCCATTTAAGTTTCTATA
ATGAAACTATTGAGAATATCATAAGGACGTTTGAGCCTAAATATTTCAGA
AAATGAAGAAGATGAGGGACAAAATTTACTGGTTCTTATTAAAAAGCGTG
TAACGTCTTTTTTATTTTGATTTCATGAGCTATTAACATTAGTTACACCC
CCCGAACAGAAACAGCCCCCCCCCCCCGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCCCCGAATAGGATTAAGTGCTTTT
TTAAGGTAGGAAATACACGCTTTCTTAGCAAGGCTATATAGAAGAACATG
ATTGGCCAAAATAATAAGAACAAATTAAGAAAATTTTAAGCTTTTCATGC
TCTAAAGCACCTGATTTCTTAGGAATATGGACAAGAATATTGACAAAAAT
AGTGAAAATAAAGAGATACAAGGCTTTAAACTAAAAAAGTTTAGAACAAC
TGAAAGTTTCAAAATTTTTGAATGCTCTTTTTCATAAACAAATTTGGATA
TTTCGAATCTATAATAAAGGATATTCTCTGAGTTGCATAAGTTTGCATGT
GGGGGGGGGGGGGGGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGAGGGGTAGATTTCGGTTTTCACGGATACTCCGTAGAAT
TAAGCCGTTTAAAATCCACGCGATACAGTAATATTATTGTTATATAATAA
TACAATAATCGCAAGAGGATATTATCAGTTTGTATAAAACGATAACTTCC
CTTCCATTATTTTTTGGGATATGTCTCAATTAGTCGTCTAGCATCGTAAA
TTTGACTTACCCAGCTGGCACACAACGTTGTTAACGTTCATCTAACGTTA
TATGGACGTTGTGAACTTTAGATGAACGTTGAAACAACGTTGTCTGCCAG
CTGGGGTACACATCAAGAAAAACATGTTTGTATTATTTTAGCTAATGAAG
CCTGCACTTGGGCATACACAAATTGGAATGATGACGGAAAAGGCGGCGCT
GTTTATTTGGACAGGCACGACGTTCGATGCAACAACGGTCAATATATCAA
ATATATGAAATTAGAAAGAAAAAAGGCAGGCTGGTTCAATTATCAAATAC
GTTATAAGTATATATGTTGTCAAAATATGGCTTCATGTTCAAGTGTTACT
CATTCGACTTTGGATACCTATAATGGTGGTTTTCAAGGAAACGCTGTCTA
CTTCGATCGCCAAACAGTCAGTTGTGGCAGAAATGGTTAGTATGAGAAAT
ATATTAGCATGACAGACATATATAAATGCCGGACTCCACTTTCGTGCGAA
ATGGGCGACAGTTTTTTTCTTAACCTTTTTTGCCTGAAGAAAAGATTACG
TCATAAAAAAGTTTTGCGCAAACAAAAAAAGTTGAAGGAAGTTCTACTTT
TTTCATCCGTTACGTCAATTTTGACCAATGGGATTGCTTCATTTTTCAAC
CGACCAATGACCTTACAAAAACGTCAAAAAGTTTTCGCTCATGTCGCTCG
AAAGTGGAGACCGACCTTAAAAGAAATTGAAGCACAGATGATAATAATAA
TCGAAGAAGTGAACGTTTCATTGATAAAAATTTCCTTTAAAAATCAAATT
AAAGAGCATCGACTGTATTTGTATGATCTGTTAACAAAGTGGATAGAGCG
ATAGAATTCTTATCGTCCGTCTCCACAGGTTGAATTTCAGAGAAAACCTA
TCGTACTCATGGTTTCTCTAGAACGTTAATTTCTCTATATAAAGATTTCA
GTTTTAAGTCGTCATTGTGAAAATTCCGGTAGCCTTTATTACTGTTATAA
TTAAGATTAACTTTGTAAAGCTTTTTAAATATTCCAATACCACAGCTTTG
CAACGGGTCAAACTTGTGAGACATGGCAACAATATTCGATATGATTTTAC
ATGCTGCAAAAAAACTGATTCTACACTAACCACATCATGTTATGCGTCAA
ATACAGGTATAGATCCCAGATGGCACACAACGTTGTTTTAACGTTTAAAC
AACGTTATTTGGACGTTATGGATGTCACATGGACGTTGAAACAACGTTGT
GTGCCAGCTGGGATAACACAGTAAATGATCGGTTATTCGCAGGTAGATAT
AAGGAATGGGTTTGGAAAATTTTGAAGAACCTTTTTGTAGGAAATATGAA
ACTCGGAAATTTTAAGAATTCGTTATTTATGTCTTCGTATCGCGTAGATT
ATCGATTTTATATTATCCATTTGCAGGAAATTCTAGCCCTTTTTGAGAAA
TTAAGTCCCTGCAACATGATCTAAAATCTGAAATTAGGTCAAAGTTCCCA
ACAAATAGAAAGAAATGGGGGGGGGGCAAAAGAGACCAACTTATTCATTT
AGGCTACACCTAAATTATTAGTAACAATCAAATTTAGCAAAAAGAGCATA
GCTACTTGCTTCAAAAAATCAATCAATCGAAAGAGTTCAGTAAGGGAAAA
TTTTCGTTGCTTTGATTAGCTGAAAATTTCAAATTTCAATGATACTCTAG
GCGATGGTGAAAAATCACTTACTACGATTGATTGATTGATTTGTATACGA
GAAAAAGTTTCTAAAAGATGTAGAGCCCCTGTTTAGCGCCTCTGTAAAAG
CCCTGGAGACACCCATAATTTACATCATGGACCAATTTAATAATTTGACA
AAAGATAACACAATAATCACAAAGTTTCCGCTTTTAAAGTGATTTCCAGT
ATTTTTGAAAAATATCTGATACTATCAAGCCATGTCACTCATGAAAATAT
CTTTCAATAAGGCCACTCAGCTGGCACACAACGTTCTTTCAACGTCAATT
TAACATTTAACGTTAGATGAACGTTGAAACAACGTTGTGTGTCAGCAGGA
CAAGCCTAGGGCGTCAGTCGAGACATGATAATCAGAAGTGATTATATTTT
CATTATTTTTTTCTTTGTCATCTTGAAACATCCCAGATCCGCTGGGACCC
AAGCCTCCCTTAAAGACTTGGCAAAAATTCTTCTCCAGTAGAAAAATACC
CTGGAAGTTCAGTCCCATTTGGATATTCAATTCGATTTCATCCCACTCGA
AATTTAATGTTTAAGAATTGCACTCCAAAATCATCTGCACTGGATTTTTT
AACCTTTCAACAATAGAATTTCTATCCCAATTTGGATTTTGATAGAAATT
TTTATACGCACTGATGAAAAAAATCTATCGGGGCTGTGAAACAGGGGTGT
CTTAAATGTTCTTTCAATTTTAGGTTTCAACGATGATGGTCGTGGCAATG
CAGCTTACCTTGATCGACACGCTATAAGCTGCAGTAACAATTACTATCTT
ACATATTTTCACTTGAAACGGAATTCTGCTCACAACAAATATCGTTATGA
TTACCAATGTTGTAAAATTAATCCACCATCACCAAGAAACTAAAGAATTT
CTGAAGAGAAATTAGGGATAAAAATAGAAGTCAGGAAAATAAATAAAACA
TAATTTTATTAGGAAAATATATAATAAATCATTTCCCTAGCGAAAGTATT
TTTCAGTATTTGTTGTTCGCATATATGTAATTGAAATGCGACTAATTGTG
AAGATTCGAAATCTGCGGATTTGATAGGTGTACAATAGCGCACCGCGCTG
AATCTAAAAATAAATTTTATTTTTGACATAATCAAAAAATAAATTNTTGT
ACAATTCATAACTGGGTATATCTGGGAGGCAATTACGAGGCAGGTAGATC
AGCTCAAAATTACATATATCTGCGCGTGTGGTTTGATTGGGCGTGATTGT
TTTGACTAAAACTGCAAAAACATTTCAAATTTGTTTCGTTTTATTAGGTC
ACCTACTACATAGCCATCCTAAACATTTAATAATTTTATTTATCAAAAAT
GTATTCGTTTATTTTATAACTATTTTAAATATATGATAACAATAGTTGAC
AGTTGGAATATTTGCAGTCCTCTTTTTAAGCAGCTTTGACAATTATTGGA
AAACGAATGAATTGTTTAGATGGAGGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073218-exon-scaffold_88-1575043694:289339..289375 | TCONS_00073218-exon-scaffold_88-1575043694:289339..289375 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1575043694:287341..287634 | TCONS_00073218-exon-scaffold_88-1575043694:287341..287634 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1575043694:286620..286730 | TCONS_00073218-exon-scaffold_88-1575043694:286620..286730 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1575043694:284597..285352 | TCONS_00073218-exon-scaffold_88-1575043694:284597..285352 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1510915933:289339..289375 | TCONS_00073218-exon-scaffold_88-1510915933:289339..289375 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1510915933:287341..287634 | TCONS_00073218-exon-scaffold_88-1510915933:287341..287634 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1510915933:286620..286730 | TCONS_00073218-exon-scaffold_88-1510915933:286620..286730 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1510915933:284597..285352 | TCONS_00073218-exon-scaffold_88-1510915933:284597..285352 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1491911889:289339..289375 | TCONS_00073218-exon-scaffold_88-1491911889:289339..289375 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1491911889:287341..287634 | TCONS_00073218-exon-scaffold_88-1491911889:287341..287634 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1491911889:286620..286730 | TCONS_00073218-exon-scaffold_88-1491911889:286620..286730 | Clytia hemisphaerica | exon |
TCONS_00073218-exon-scaffold_88-1491911889:284597..285352 | TCONS_00073218-exon-scaffold_88-1491911889:284597..285352 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_88 | supercontig | scaffold_88:284597..289375 - |
Blast
The following BLAST results are available for this feature:
|