TCONS_00073213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073213
Unique NameTCONS_00073213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2232

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073213 ID=TCONS_00073213|Name=TCONS_00073213|organism=Clytia hemisphaerica|type=transcript|length=2232bp
taattgtaaaaatatacaatttttttcatttcttgacatatactcaagtc
acagggggtaccaatcacagggggtacctactaacgtctgttgtttgggt
tacctaaaattcaggggatacctattttcttagggggtacctaaactGGT
CCATGCCATGATAATTTTGTTGGTAGTAAATAGGCtaaaaaataagttaa
aaaatagaaaatgcaGGACCCAAGTGCTGATACTGAGTGGAATGATGCTT
TACGAAGACATGGTATTATACCAGAGAAAAAGAAGGAAGCAGAAATAACT
GAAGATGAAatcatcaaaatggtagatGCAGCTGTGAAAGCTAAAACAGG
AGAAAAAGATGTGAATGAGATGACTTTGGATGAATTAAACGAAAAAGAGG
ATGAAGACTGGGACGATGACGGTCTCATTGAACAAATTAGGCAACAAAGA
TTAGCAGAGATGAAAGTATTGCAAGCTAAATCGAAATTTGGTGATGTTCG
TGAAATTTCAGCTGTTGATTATGTTGATGAGGTCAATAAAGCTGGAGACG
ATGTTTGGGTTGTATTGCATTTATATAAATCTGGAATTCCATTATGCGAT
GTAATTAATCACCATATCCAAGCACTAGCAAGAAAATTTCCGACCACCAA
ATTCTTGAAAAGTGTATCAACAACATGTATTCCGAACTATCCAGACAAGA
ATTTGCCAACCATCTTCATTTATTACGAAGGAGACATGAAAGGACAATTA
GCTGGTCCATTGACTTTTGGTGGAATGAGCTTGACTCAAAACGATCTTGA
ATGGAAACTATCGAAACTCGGTGCCGTCAAATCAACCATGAAATCAGATC
CACGTGGAACGAATGTTGATGACAGTTCGGGATTCTCTATGCTATCTCGT
TCATCGCGCACGCGCAAAGAATCCGTGTCTAGTGATGATGATTATTAGAG
ATTCTTGATATACATGAcctaatcttttatacggaaacacccgaaaaaca
cCGGACGTTTGCCtccagttttgaatttaaacaatgaaCTGGTGGCAAAC
TTCCGGTGTTTTTCGGGTGTCCCGTATAAAAGATAaagtcatgaatatca
agaattgaaagaacatttttttgtcAATACATACAACGATGTGATGAGTT
TCCATTATATTTATACACTTGAGGACAACAAATGTCAATCTGGAAATCGG
AAATCGAGACGAGATTATTAAATCGATCGCTGTTTTATTGGCTGTGTTGT
CAAACATTACTGGGTTCAAAGAAGTTTATAACACCTAATTGACACtgatt
ttgatttcataaaATGAATCATTGCGGGGGATAGGGTTTGCAAATGATGG
AAAGTTTGTGCTGCCTCAGTTTTTACAAACCTTTTAACTTTAATGTGCAC
TTTGGAGAGTTCTTTCATAAATCATCTAGCTAGGCTGTTCTAGTACAGCC
AGGTGCAGTACATGATAAAACTCATTTTTCCCAAAAGTACCCCCCTCTCC
CTTCAGTGCGTATATGAATATCACCCTTGTAGGTTTGAAATCTGCGTGTA
AATGGTTGGAGGAATTGTTATAGATTCGGTTCGGATATTTTAAATCAGCG
ATcgtcaattattttttattttatgattaatttacatttagatagttttt
attccaaatttatgcgaaatcatttttattatatttatacCATTCGATTT
TTCAACTCGTCATACAGTGCTGAGGCCAAATTTATGAAACTGTAGTCTAG
TTTAAAGAAAACACAGTCAATGTCGATCTTTCGGCACCAATGATTGAACT
ATTTGAATTTGAGACGTTCACGCGCTACGGTTCCGTTTCtctccgaaacg
aaacgaagccattctattggttaaattcaatatttacgtcacttctaacc
taTGGAATAGcttcgtttcgtttcggagcgaaaacGAACGgttacgtgcg
aacatggtctgagCTCATCGTTAAAAAGCGttctccaaatttttcaaaaa
taacgtGATAATCAACTGATTATGTTTAAGGTGGCAATTCTGAACATTCT
ACTGAAAATTGTGAATCAGTTGGAACCTAGTCACGGTGATGAAGTTTCGT
TATCACCTGTTAGTTATACCCAACATAATTTATAATTGGATTAACTTTGT
ATAGTTTTTTGCCTAAGTTTTTTCAAGCATTTCTATAATTCCTTTTTCTC
CAtgtcaaaatatatattttcactaTACCATA
Run BLAST on NCBI

protein sequence of TCONS_00073213-protein

>TCONS_00073213-protein ID=TCONS_00073213-protein|Name=TCONS_00073213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MQDPSADTEWNDALRRHGIIPEKKKEAEITEDEIIKMVDAAVKAKTGEKD
VNEMTLDELNEKEDEDWDDDGLIEQIRQQRLAEMKVLQAKSKFGDVREIS
AVDYVDEVNKAGDDVWVVLHLYKSGIPLCDVINHHIQALARKFPTTKFLK
SVSTTCIPNYPDKNLPTIFIYYEGDMKGQLAGPLTFGGMSLTQNDLEWKL
SKLGAVKSTMKSDPRGTNVDDSSGFSMLSRSSRTRKESVSSDDDY
Run BLAST on NCBI

transcript from alignment at scaffold_88:48813..54598-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073213 ID=TCONS_00073213|Name=TCONS_00073213|organism=Clytia hemisphaerica|type=transcript|length=5786bp|location=Sequence derived from alignment at scaffold_88:48813..54598- (Clytia hemisphaerica)
TAATTGTAAAAATATACAATTTTTTTCATTTCTTGACATATACTCAAGTC
ACAGGGGGTACCAATCACAGGGGGTACCTACTAACGTCTGTTGTTTGGGT
TACCTAAAATTCAGGGGATACCTATTTTCTTAGGGGGTACCTAAACTGGT
CCATGCCATGATAATTTTGTTGGTAGTAAATAGGCTAAAAAATAAGTTAA
AAAATAGAAAATGCAGGACCCAAGTGCTGATACTGAGTGGAATGATGCTT
TACGAAGACATGGTATTATACCAGAGAAAAAGAAGGAAGCAGAAATAACT
GAAGATGAAATCATCAAAATGGTAGATGCAGCTGTGAAAGCTAAAACAGG
AGAAAAAGATGTGAATGTAAGTAAATAGACATTTCCTTTCGATTCTTTTT
TATATTTTTTTGATGATAGTTTTTACAAGAAATGGAAAAAAACTTTAGAA
TTGCCTGACCCAACTATGAAAATGAATAGGTTCAACTATCAAAACTTTTT
AAAGTTTATTGAATCTCCTAGTCCTAAACTATGAGATTTCTGGGCCTACC
TGACGGAATTTTCTTGAATTTTCTCCTTATTTTTTCCTACTTTCTTGTTT
ATTTTTCTGTTGATTAGCCAGGTATGTCCTTAAAAGTATCACTTATTACA
TAATCGCTCAACTCTGACAGGCTCTAATAAACACGATTAGCAACAAACCA
TTACTTTTCTTAGCTAGAAATTGACTTCCTTTATGTTTTAAATTTCCAAA
CTTATTTACTTTTATATTCTTTTCATTGATTGCAGGAGATGACTTTGGAT
GAATTAAACGAAAAAGAGGATGAAGACTGGGACGATGACGGTCTCATTGA
ACAAATTAGGTGAGAGAATGACCTTTATTTACCCTAGACAACGCTTCTTG
ACCCTGGTGAAACAAAATCTTTGATCAAAGTTTTCTAAAAGTGGTACCCT
ATTAGTAGCACTACTCAATGTGGGTGAAAGAACTTTGAAACAAAAAATTT
CAGTGAATTATAAATGGACACACATCGTCGAGTAGTGCTGACATTAGGGT
AACACATTCAAAATACTTGATCAGAGATGGCTGATATAGCTTGGTCCAAA
AGATATATAAAGGTCCAGAAAGGTCAGTTGGTGTGAACGAAATGTCTTAA
AAATCAGTTCTATTTGTTGACTTACAATAATTCTTTTAGACAACGAATTA
TCAAGAAAAGTTATTTTTCAATCCATCAACAAACAAAACTAAAAATTTTA
AATTGAGTACATAACTCAGAGTTTCATGTTTCCACGAAAAAGATAACTTT
TCTTGATAAGTATATGGCTCTGGTTACCCATCGAGCACTCTGACATCATC
GCTTCGTCTAACCTTGATTAGACAACGAAACACTTATTTATACCTGTTTA
AACTATTGTCTACAGTATAATGTCTTCTTCCCTTTTTGCTGAGGGTGACT
GGAGATTGTCTAAATATAGAAATAAAACACACCAACACAACATTGGTTAT
GATATCATTTTGGATTTGTTTTACAGGCAACAAAGATTAGCAGAGATGAA
AGTATTGCAAGCTAAATCGAAATTTGGTGATGTTCGTGAAATTTCAGCTG
TTGATTATGTTGATGAGGTCAATAAAGCTGGAGACGATGTTTGGGTTGTA
TTGCATTTATATAAATCTGGGTATCCTTTTCAAATGTAGATGCTTTTTTA
TGAGAACCATGCAATGATCTCTAACTACTTTATTGGGTCAGGCTACCCGT
ATCTTAGGAAGAGTGTCCAGGTTTAAAGCTGACTAGTCCATCATCTCGTT
TTCAATTCTGGCTGTTAAAGGTTTTGTTTTTAAAAATAAGAGTAATATCG
TTTGCTTACTCATCAATTTTAATTCACAAGCTTTTTCACATTGACACGGA
TGTGGAGGAAGATTGATCAGAAAGAGGAAAACAAAAACATTTTTTGCTTA
TATCAGCATAATATAACAATAAGAAGACACTGTCCTGATATGAAATATGT
GTCTGATAAGAAACGGAAACACTTAAAAAGTTAACAGCGTGGTTCGAAAG
TTTTAAAATTCGAACGTTCGAAAGTCTAAGGTAAAATAGAAAACAACATA
GTGGACTAGCCGACTTCAAACTGGACATACTTCCACAGGGCTCGAAATAA
CGGTCGGACATCGGACATTGTCCGACCCAATTGCTGAAATGTCCGACCCA
AATCGATTCTAGTCGGACATCATGTCCGACCCAATTACTTTCGGTGCCTT
CAAAAAATTTGTCAGATGCGTTGTGAAATTTCCAAAAGAAATTATAATTT
ACATAGAATTAGTAACTTCTTTATTTACACACAAAAACTCTCAAAGTTGC
GATTATTAGTGTTAGATATTAATTTTGTGTGATGCTTTTTCTCAACAAAT
GAAAGCATTCTTCAAGTAAAAATCATGGGCTTCTGACCATTAATTGGCAT
TTGTTTAGCTTCTTTGTAATCAATATAATGTTAAGTATAATAGTAGAAGT
ATGTATGAAATATACCCACATAAAAATCAATCGGACATGTCCGACCCAAA
TCAATTTTTGATCGGACAATGTGTCCGACCACCTAAATATCGTTATTTCG
AGCCCTGCTTCCAAATCTGTGAGCAGTTAGCAGTTCTAGTGTGTGAAAGA
ATGTGATATCTGTGAAAAGAGCGATTGCAAGTTTTGGCTTGTCTTTGGCC
AAACTTTTTTGACAAGTTTTTCAAAATAAAGTTAATACTCAGGCTTCGAA
AGGAGGCTTCTTAAAATCAATATCTTGTTAGTTATCAATAGTGAGATAAC
GCTCCTGGAAATTGCTTTCTTGTTCACTTTGTCAAATTTAGACAAAAAGC
CCAGATTTCGGGACCCTGTAACTAGCCATCCGGTTGGAATTTTTCAAAAA
AATTTTGACATGTTGCAACAATCATGGTTTTGACCAAAGTATTTGAGAAT
TAAGCAGTTCTGAGAATATCACTTCCTGACCCTACCCATTCTTGTCTATT
TTTCTCAGAAAATGGCTCTTAAGGGCAACAAATTCATTATAAGATTTTTC
TCATATAAATTCTGCCCCTCTGTTTTCCAGACGCACTTTTCCAAAACACT
GTTGATTAAATTTGCTACGCAGTGTATCAACTGTCATATATTTGTGTTAA
TATTCTTCTTAACTTTTTATTGCATTAACATTCGAAAAGAATTCCATTAT
GCGATGTAATTAATCACCATATCCAAGCACTAGCAAGAAAATTTCCGACC
ACCAAATTCTTGAAAAGTGTATCAACAACATGTATTCCGAACTATCCAGA
CAAGAATTTGCCAACCATCTTCATTTATTACGAAGGAGACATGAAAGGAC
AATTAGCTGGTCCATTGACTTTTGGTGGAATGAGCTTGACTCAAAACGGT
GAGCATAGTTTTGTTCTAAGGATTTTTAATAAGAATAACTTTTCGTAATG
TTCTTTAAAGAGCTCGTATGAACCTATCCTCATTACTTGAAGGTTAAAAT
CGAATTTTCCTATGACTTGAAATCTGATTCTCAGATTGATCTTAATTTGG
TCCTTCTTAAGATTTGGCTTGATTTCAGTCAGCACCATGTACTTATGAAA
TTGTTCTTATAAAAAAACGACGTTTCGATAAAATAGTTAAAAATAGTCAT
ACCAAAAGATTATTTCTTCTCTTAGTAACACTGATAACTTAAAGCTATGC
TTTATTTAAGGGAATAATAGTAAATATAACCCTATTTTTACTACTTTGAC
CCTAAGATTTTTCCAAAACTTTAAGCTATTTCAAGCTGAACTTTTTTTTC
TTAAATTTTCCTTATTTAATTTGCCGTTTTTCAGCCTCGGTGTCCTAATA
AAAAGAATACTGTACAGTATTCAAGATATACACTACTAGAGAGCCTTCCA
AGAATTTTCAAAAAATTCCACACAATACGTCACTTTTTTTATTCTTTAAG
TGACGTATTGGGTGGAAAATTTTAAAAGTTCTCGAGAGACTCTCCAGTGG
TACATATCACGAATGCGTTATTTTAGATCCTGAATGTCAATAGTAAGTTA
TTTCTTTATCTCTAAATATTTCGCTCANCTTTATTTAAGGGCATACATTT
AACCCTATTTTTTGATATTTCGACCGTAAGATTTTTCCAAAATTAAGCTA
TTTCAAGCTCAACTTTTTTTTCTTAAATTTTCCTTATTTAATTTGCCGTT
TTTAAGCCTCGTTGTCTTAATAAAAAAGAGTGTACTTAGTTTAGATCTTG
AATGGCAATTGTAAGTTAGTTCTTTATCTCGTGATATTTCGCTCAAATTT
TTTCAAATTTTCTTGAACACTTTGTGATTCTATTTATTTCACTGTAGATC
TTGAATGGAAACTATCGAAACTCGGTGCCGTCAAATCAACCATGAAATCA
GATCCACGTGGAACGAATGTTGATGACAGTTCGGGATTCTCTATGCTATC
TCGTTCATCGCGCACGCGCAAAGAATCCGTGTCTAGTGATGATGATTATT
AGAGATTCTTGATATACATGACCTAATCTTTTATACGGAAACACCCGAAA
AACACCGGACGTTTGCCTCCAGTTTTGAATTTAAACAATGAACTGGTGGC
AAACTTCCGGTGTTTTTCGGGTGTCCCGTATAAAAGATAAAGTCATGAAT
ATCAAGAATTGAAAGAACATTTTTTTGTCAATACATACAACGATGTGATG
AGTTTCCATTATATTTATACACTTGAGGACAACAAATGTCAATCTGGAAA
TCGGAAATCGAGACGAGATTATTAAATCGATCGCTGTTTTATTGGCTGTG
TTGTCAAACATTACTGGGTTCAAAGAAGTTTATAACACCTAATTGACACT
GATTTTGATTTCATAAAATGAATCATTGCGGGGGATAGGGTTTGCAAATG
ATGGAAAGTTTGTGCTGCCTCAGTTTTTACAAACCTTTTAACTTTAATGT
GCACTTTGGAGAGTTCTTTCATAAATCATCTAGCTAGGCTGTTCTAGTAC
AGCCAGGTGCAGTACATGATAAAACTCATTTTTCCCAAAAGTACCCCCCT
CTCCCTTCAGTGCGTATATGAATATCACCCTTGTAGGTTTGAAATCTGCG
TGTAAATGGTTGGAGGAATTGTTATAGATTCGGTTCGGATATTTTAAATC
AGCGATCGTCAATTATTTTTTATTTTATGATTAATTTACATTTAGATAGT
TTTTATTCCAAATTTATGCGAAATCATTTTTATTATATTTATACCATTCG
ATTTTTCAACTCGTCATACAGTGCTGAGGCCAAATTTATGAAACTGTAGT
CTAGTTTAAAGAAAACACAGTCAATGTCGATCTTTCGGCACCAATGATTG
AACTATTTGAATTTGAGACGTTCACGCGCTACGGTTCCGTTTCTCTCCGA
AACGAAACGAAGCCATTCTATTGGTTAAATTCAATATTTACGTCACTTCT
AACCTATGGAATAGCTTCGTTTCGTTTCGGAGCGAAAACGAACGGTTACG
TGCGAACATGGTCTGAGCTCATCGTTAAAAAGCGTTCTCCAAATTTTTCA
AAAATAACGTGATAATCAACTGATTATGTTTAAGGTGGCAATTCTGAACA
TTCTACTGAAAATTGTGAATCAGTTGGAACCTAGTCACGGTGATGAAGTT
TCGTTATCACCTGTTAGTTATACCCAACATAATTTATAATTGGATTAACT
TTGTATAGTTTTTTGCCTAAGTTTTTTCAAGCATTTCTATAATTCCTTTT
TCTCCATGTCAAAATATATATTTTCACTATACCATA

Coding sequence (CDS) from alignment at scaffold_88:48813..54598-

>TCONS_00073213 ID=TCONS_00073213|Name=TCONS_00073213|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_88:48813..54598- (Clytia hemisphaerica)
ATCTTGAATGGAAACTATCGAAACTCGGTGCCGTCAAATCAACCATGAAA
TCAGATCCACGTGGAACGAATGTTGATGACAGTTCGGGATTCTCTATGCT
ATCTCGTTCATCGCGCACGCGCAAAGAATCCGTGTCTAGTGATGATGATT
ATTAGAATTCCATTATGCGATGTAATTAATCACCATATCCAAGCACTAGC
AAGAAAATTTCCGACCACCAAATTCTTGAAAAGTGTATCAACAACATGTA
TTCCGAACTATCCAGACAAGAATTTGCCAACCATCTTCATTTATTACGAA
GGAGACATGAAAGGACAATTAGCTGGTCCATTGACTTTTGGTGGAATGAG
CTTGACTCAAAACGGCAACAAAGATTAGCAGAGATGAAAGTATTGCAAGC
TAAATCGAAATTTGGTGATGTTCGTGAAATTTCAGCTGTTGATTATGTTG
ATGAGGTCAATAAAGCTGGAGACGATGTTTGGGTTGTATTGCATTTATAT
AAATCTGGGAGATGACTTTGGATGAATTAAACGAAAAAGAGGATGAAGAC
TGGGACGATGACGGTCTCATTGAACAAATTAGATGCAGGACCCAAGTGCT
GATACTGAGTGGAATGATGCTTTACGAAGACATGGTATTATACCAGAGAA
AAAGAAGGAAGCAGAAATAACTGAAGATGAAATCATCAAAATGGTAGATG
CAGCTGTGAAAGCTAAAACAGGAGAAAAAGATGTGAATATCTTGAATGGA
AACTATCGAAACTCGGTGCCGTCAAATCAACCATGAAATCAGATCCACGT
GGAACGAATGTTGATGACAGTTCGGGATTCTCTATGCTATCTCGTTCATC
GCGCACGCGCAAAGAATCCGTGTCTAGTGATGATGATTATTAGAATTCCA
TTATGCGATGTAATTAATCACCATATCCAAGCACTAGCAAGAAAATTTCC
GACCACCAAATTCTTGAAAAGTGTATCAACAACATGTATTCCGAACTATC
CAGACAAGAATTTGCCAACCATCTTCATTTATTACGAAGGAGACATGAAA
GGACAATTAGCTGGTCCATTGACTTTTGGTGGAATGAGCTTGACTCAAAA
CGGCAACAAAGATTAGCAGAGATGAAAGTATTGCAAGCTAAATCGAAATT
TGGTGATGTTCGTGAAATTTCAGCTGTTGATTATGTTGATGAGGTCAATA
AAGCTGGAGACGATGTTTGGGTTGTATTGCATTTATATAAATCTGGGAGA
TGACTTTGGATGAATTAAACGAAAAAGAGGATGAAGACTGGGACGATGAC
GGTCTCATTGAACAAATTAGATGCAGGACCCAAGTGCTGATACTGAGTGG
AATGATGCTTTACGAAGACATGGTATTATACCAGAGAAAAAGAAGGAAGC
AGAAATAACTGAAGATGAAATCATCAAAATGGTAGATGCAGCTGTGAAAG
CTAAAACAGGAGAAAAAGATGTGAATATCTTGAATGGAAACTATCGAAAC
TCGGTGCCGTCAAATCAACCATGAAATCAGATCCACGTGGAACGAATGTT
GATGACAGTTCGGGATTCTCTATGCTATCTCGTTCATCGCGCACGCGCAA
AGAATCCGTGTCTAGTGATGATGATTATTAGAATTCCATTATGCGATGTA
ATTAATCACCATATCCAAGCACTAGCAAGAAAATTTCCGACCACCAAATT
CTTGAAAAGTGTATCAACAACATGTATTCCGAACTATCCAGACAAGAATT
TGCCAACCATCTTCATTTATTACGAAGGAGACATGAAAGGACAATTAGCT
GGTCCATTGACTTTTGGTGGAATGAGCTTGACTCAAAACGGCAACAAAGA
TTAGCAGAGATGAAAGTATTGCAAGCTAAATCGAAATTTGGTGATGTTCG
TGAAATTTCAGCTGTTGATTATGTTGATGAGGTCAATAAAGCTGGAGACG
ATGTTTGGGTTGTATTGCATTTATATAAATCTGGGAGATGACTTTGGATG
AATTAAACGAAAAAGAGGATGAAGACTGGGACGATGACGGTCTCATTGAA
CAAATTAGATGCAGGACCCAAGTGCTGATACTGAGTGGAATGATGCTTTA
CGAAGACATGGTATTATACCAGAGAAAAAGAAGGAAGCAGAAATAACTGA
AGATGAAATCATCAAAATGGTAGATGCAGCTGTGAAAGCTAAAACAGGAG
AAAAAGATGTGAATATCTTGAATGGAAACTATCGAAACTCGGTGCCGTCA
AATCAACCATGAAATCAGATCCACGTGGAACGAATGTTGATGACAGTTCG
GGATTCTCTATGCTATCTCGTTCATCGCGCACGCGCAAAGAATCCGTGTC
TAGTGATGATGATTATTAGAATTCCATTATGCGATGTAATTAATCACCAT
ATCCAAGCACTAGCAAGAAAATTTCCGACCACCAAATTCTTGAAAAGTGT
ATCAACAACATGTATTCCGAACTATCCAGACAAGAATTTGCCAACCATCT
TCATTTATTACGAAGGAGACATGAAAGGACAATTAGCTGGTCCATTGACT
TTTGGTGGAATGAGCTTGACTCAAAACGGCAACAAAGATTAGCAGAGATG
AAAGTATTGCAAGCTAAATCGAAATTTGGTGATGTTCGTGAAATTTCAGC
TGTTGATTATGTTGATGAGGTCAATAAAGCTGGAGACGATGTTTGGGTTG
TATTGCATTTATATAAATCTGGGAGATGACTTTGGATGAATTAAACGAAA
AAGAGGATGAAGACTGGGACGATGACGGTCTCATTGAACAAATTAGATGC
AGGACCCAAGTGCTGATACTGAGTGGAATGATGCTTTACGAAGACATGGT
ATTATACCAGAGAAAAAGAAGGAAGCAGAAATAACTGAAGATGAAATCAT
CAAAATGGTAGATGCAGCTGTGAAAGCTAAAACAGGAGAAAAAGATGTGA
ATATCTTGAATGGAAACTATCGAAACTCGGTGCCGTCAAATCAACCATGA
AATCAGATCCACGTGGAACGAATGTTGATGACAGTTCGGGATTCTCTATG
CTATCTCGTTCATCGCGCACGCGCAAAGAATCCGTGTCTAGTGATGATGA
TTATTAGAATTCCATTATGCGATGTAATTAATCACCATATCCAAGCACTA
GCAAGAAAATTTCCGACCACCAAATTCTTGAAAAGTGTATCAACAACATG
TATTCCGAACTATCCAGACAAGAATTTGCCAACCATCTTCATTTATTACG
AAGGAGACATGAAAGGACAATTAGCTGGTCCATTGACTTTTGGTGGAATG
AGCTTGACTCAAAACGGCAACAAAGATTAGCAGAGATGAAAGTATTGCAA
GCTAAATCGAAATTTGGTGATGTTCGTGAAATTTCAGCTGTTGATTATGT
TGATGAGGTCAATAAAGCTGGAGACGATGTTTGGGTTGTATTGCATTTAT
ATAAATCTGGGAGATGACTTTGGATGAATTAAACGAAAAAGAGGATGAAG
ACTGGGACGATGACGGTCTCATTGAACAAATTAGATGCAGGACCCAAGTG
CTGATACTGAGTGGAATGATGCTTTACGAAGACATGGTATTATACCAGAG
AAAAAGAAGGAAGCAGAAATAACTGAAGATGAAATCATCAAAATGGTAGA
TGCAGCTGTGAAAGCTAAAACAGGAGAAAAAGATGTGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045415XLOC_045415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073213-exon-scaffold_88-1575043694:54233..54598TCONS_00073213-exon-scaffold_88-1575043694:54233..54598Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1575043694:53740..53813TCONS_00073213-exon-scaffold_88-1575043694:53740..53813Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1575043694:52929..53072TCONS_00073213-exon-scaffold_88-1575043694:52929..53072Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1575043694:51201..51409TCONS_00073213-exon-scaffold_88-1575043694:51201..51409Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1575043694:48813..50251TCONS_00073213-exon-scaffold_88-1575043694:48813..50251Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1510915933:54233..54598TCONS_00073213-exon-scaffold_88-1510915933:54233..54598Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1510915933:53740..53813TCONS_00073213-exon-scaffold_88-1510915933:53740..53813Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1510915933:52929..53072TCONS_00073213-exon-scaffold_88-1510915933:52929..53072Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1510915933:51201..51409TCONS_00073213-exon-scaffold_88-1510915933:51201..51409Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1510915933:48813..50251TCONS_00073213-exon-scaffold_88-1510915933:48813..50251Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1491911889:54233..54598TCONS_00073213-exon-scaffold_88-1491911889:54233..54598Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1491911889:53740..53813TCONS_00073213-exon-scaffold_88-1491911889:53740..53813Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1491911889:52929..53072TCONS_00073213-exon-scaffold_88-1491911889:52929..53072Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1491911889:51201..51409TCONS_00073213-exon-scaffold_88-1491911889:51201..51409Clytia hemisphaericaexon
TCONS_00073213-exon-scaffold_88-1491911889:48813..50251TCONS_00073213-exon-scaffold_88-1491911889:48813..50251Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073213-proteinTCONS_00073213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:48813..54598 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
22.8398	21.4556	5.28299	2.90859	59.1924	44.4213	67.2655	70.6045	52.2909	49.3007	37.4717	35.2135	32.2326	27.619	33.549	35.8812	56.9051	53.3497	13.7863	17.2989	27.313	26.4391	36.6904	36.1067	25.6073	29.7739	35.9929	27.2689	39.5829	36.2063
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024253Phosducin_thioredoxin-like_dom
IPR012336Thioredoxin-like_fold
Blast
[Close]
BLAST of TCONS_00073213 vs. Swiss-Prot (Human)
Match: PDCL3 (Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 8.923e-68
Identity = 115/217 (53.00%), Postives = 160/217 (73.73%), Query Frame = 1 
Query:  211 MQDPSADTEWNDALRRHGIIPEKKKEAEITEDEII--KMVDAAVKAKTGEKDVNEMTLDELNEKEDEDWDDDGLIEQIRQQRLAEMKVLQAKSKFGDVREISAVDYVDEVNKAGDDVWVVLHLYKSGIPLCDVINHHIQALARKFPTTKFLKSVSTTCIPNYPDKNLPTIFIYYEGDMKGQLAGPLTFGGMSLTQNDLEWKLSKLGAVKSTMKSDPR 855
            MQDP+ADTEWND LR+ GI+P K+   E+ E+     +++  +V  KT E D+    L++  ++ +E+  D+  IE  R++RLAE K  + K+KFG+V EIS  DYV EV KAG+ +WV+LHLYK GIPLC +IN H+  LARKFP  KF+K++STTCIPNYPD+NLPTIF+Y EGD+K Q  GPL FGGM+LT+++LEWKLS+ GA+ + ++ +P+
Sbjct:    1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSV-VKTYE-DMTLEELEDHEDEFNEE--DERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTDLEENPK 213
The following BLAST results are available for this feature:
BLAST of TCONS_00073213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCL38.923e-6853.00Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 ... [more]
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