TCONS_00073213-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00073213-protein
Unique NameTCONS_00073213-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073213-protein ID=TCONS_00073213-protein|Name=TCONS_00073213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MQDPSADTEWNDALRRHGIIPEKKKEAEITEDEIIKMVDAAVKAKTGEKD
VNEMTLDELNEKEDEDWDDDGLIEQIRQQRLAEMKVLQAKSKFGDVREIS
AVDYVDEVNKAGDDVWVVLHLYKSGIPLCDVINHHIQALARKFPTTKFLK
SVSTTCIPNYPDKNLPTIFIYYEGDMKGQLAGPLTFGGMSLTQNDLEWKL
SKLGAVKSTMKSDPRGTNVDDSSGFSMLSRSSRTRKESVSSDDDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045415XLOC_045415Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073213TCONS_00073213Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024253Phosducin_thioredoxin-like_dom
IPR012336Thioredoxin-like_fold
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.30.10coord: 78..209
e-value: 2.6E-11
score: 42.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 209..245
NoneNo IPR availableCDDcd02988Phd_like_VIAFcoord: 8..204
e-value: 2.84825E-92
score: 271.446
IPR024253Phosducin, thioredoxin-like domainPFAMPF02114Phosducincoord: 47..179
e-value: 4.0E-16
score: 58.7
IPR012336Thioredoxin-like foldSUPERFAMILY52833Thioredoxin-likecoord: 7..207

Blast
[Close]
BLAST of TCONS_00073213-protein vs. Swiss-Prot (Human)
Match: PDCL3 (Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.586e-75
Identity = 122/245 (49.80%), Postives = 173/245 (70.61%), Query Frame = 0 
Query:    1 MQDPSADTEWNDALRRHGIIPEKKKEAEITEDEII--KMVDAAVKAKTGEKDVNEMTLDELNEKEDEDWDDDGLIEQIRQQRLAEMKVLQAKSKFGDVREISAVDYVDEVNKAGDDVWVVLHLYKSGIPLCDVINHHIQALARKFPTTKFLKSVSTTCIPNYPDKNLPTIFIYYEGDMKGQLAGPLTFGGMSLTQNDLEWKLSKLGAVKSTMKSDPRGTNVDDSSGFSMLSRSSRTRKESVSSDD 243
            MQDP+ADTEWND LR+ GI+P K+   E+ E+     +++  +V  KT E D+    L++  ++ +E+  D+  IE  R++RLAE K  + K+KFG+V EIS  DYV EV KAG+ +WV+LHLYK GIPLC +IN H+  LARKFP  KF+K++STTCIPNYPD+NLPTIF+Y EGD+K Q  GPL FGGM+LT+++LEWKLS+ GA+ + ++ +P+   ++D    S + RS   +++S S  D
Sbjct:    1 MQDPNADTEWNDILRKKGILPPKESLKELEEEAEEEQRILQQSV-VKTYE-DMTLEELEDHEDEFNEE--DERAIEMYRRRRLAEWKATKLKNKFGEVLEISGKDYVQEVTKAGEGLWVILHLYKQGIPLCALINQHLSGLARKFPDVKFIKAISTTCIPNYPDRNLPTIFVYLEGDIKAQFIGPLVFGGMNLTRDELEWKLSESGAIMTDLEENPKKP-IEDVL-LSSVRRSVLMKRDSDSEGD 239
The following BLAST results are available for this feature:
BLAST of TCONS_00073213-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDCL34.586e-7549.80Phosducin-like protein 3 OS=Homo sapiens GN=PDCL3 ... [more]
back to top