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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073208 ID=TCONS_00073208|Name=TCONS_00073208|organism=Clytia hemisphaerica|type=transcript|length=2010bp
Nggggggggggggttggaaaaaatctcaaaatttaataagagggttggaa
taagaatgtcctgggtggaaaattttcgaaaaattaattagcgctccccc
cggctattaggtacccgagagtaatacTGTATAGTCCATCAATTTGGAGC
GCTTCCTTCGACGTTAAAAGTTTGaagaataattttaaaacgaaTTGACT
ATATTGTTGATGGTTCAAATAAATATCTTGCATTGTTCTGCAGGGTTTCT
ACAAGATCCGTAAGCAGTTTTATATATGTATAGATCGACTTCGATGCCTA
ATGGTGTACTGCTAtatgacacccccttctcaaagaccaactggaaaaat
tgtccaaaatatcgtccccggtggaaaattatcctccaatttttgtcccc
actgaaaataatcaaataaacaaatccttaGCAGAATATGATGCTTATTT
CATATCCAATGAATTTTCTGagtggaaaacaaaagaattgaaatccccag
tcataaacaatatgggaatatcaatctccattgagtttcaattttatccc
cactagcTGAAAAGAttctactgggtctgtgagaagagggtgttaTATGC
TGACTATGCATGGTGATATATTTCATCCACTACCATCGAgggtaaaataa
aaaatcctttcCTTTTCACTAACAAAAAATacgaataaaataaaataacg
aAGGTTGCAAAAAAATCACTACCCCAATGATAGTGGATGGAAACTACCAA
GCGGCATTTATAACTGTCCCTTCGAAAATACTAAAAAAGACATCATTCTA
TCATCATTTTTCGCCTGAAATTGTTTCAGcataattttcagaaacttCAC
ATTGTGTCCAATGGAAAGTATCATCAAAATTAAGTATCATCGAAAAATTT
CTTCGTGATTTCAGCCGTTGCTGTAGTGTCACCTTTGAGTATAACTTTGT
TTGTGCATAAAAAATCCACTTTGTAAATACCCTAAAAAGGCACCTTGTCT
AACATAATTGTATCGTATTTACAAGTTCACTACtATAACACAGAAGACAA
ATGATAAGATAAacctctttttgaaaaaaaaatggtacccaaaatataaa
aaCTTGGCTGTCAAAAGACAATTCAGATGTTTTTAGCTCTTCATTTTAAG
GGTACTGTTTTTAGAAAAACCACTTAAGGCCCAGCATGAAGATTGTCGGT
TTCAGACAGTTTCTAATAATATTACAGCCCAAaatctgataatttttttc
aaaagaagtttGTGTatacactgacctttatataccctggacaaagcttc
tcaatcccagccaagcaaaatctttgatcggagtattttgaaaagtggta
ccctaatggcggcactactcgatggtggtgtaaatgcatcgacagcgcta
ggtctacttttcctcaaattcttttgatgatgtagcggcgttagacgttg
atttttaacattgcaatggcttcttctcgggtaccaaatcaaaaaaactt
caatcaatgatggcagatattgcttggtccagggatatataaaggtcagt
ggtgtATACACTTGAAATGTTATTCCAAAATCTATCACCATGCACCAAAA
TAGTTTTCTAAGCAATACGTATTTAAAAGTTTGTTATTAAaatgaaacaa
agaaaacaaaacaacagtTAAATTATAATTTCTTGAGTTTCTGTCTGTGA
GCTGAGTGTGAATTAGCATATCAAGTTCATTCCCTTATTCCGACCTAGCA
AGTGGATGATAAAGATTATAAGCCGGTCGGTATAATACATCGAAATGACG
TCCAAATTACGTCCATGACGTTAAGATTACGTACCTCATACCATCATATC
ATTCAGAATAGTCTTGGATATATACCGCAACGGATCATTTTCGAAAGCAC
TCCAAAAAAGCATTGTCAGCATTTACAAACTCATGTGTACGAAAAGAACC
ACACCGTTTGAAAAGCTGTGTTGAAAGAAGACCTTTCGTGGAAGTCACGG
TAAATATTTC Run BLAST on NCBI transcript from alignment at scaffold_88:334445..336559+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073208 ID=TCONS_00073208|Name=TCONS_00073208|organism=Clytia hemisphaerica|type=transcript|length=2115bp|location=Sequence derived from alignment at scaffold_88:334445..336559+ (Clytia hemisphaerica)
Nggggggggggggttggaaaaaatctcaaaatttaataagagggttggaa
taagaatgtcctgggtggaaaattttcgaaaaattaattagcgctccccc
cggctattaggtacccgagagtaatacTGTATAGTCCATCAATTTGGAGC
GCTTCCTTCGACGTTAAAAGTTTGaagaataattttaaaacgaaTTGACT
ATATTGTTGATGGTTCAAATAAATATCTTGCATTGTTCTGCAGGGTTTCT
ACAAGATCCGTAAGCAGTTTTATATATGTATAGATCGACTTCGATGCCTA
ATGGTGTACTGCTAtatgacacccccttctcaaagaccaactggaaaaat
tgtccaaaatatcgtccccggtggaaaattatcctccaatttttgtcccc
actgaaaataatcaaataaacaaatccttaGCAGAATATGATGCTTATTT
CATATCCAATGAATTTTCTGagtggaaaacaaaagaattgaaatccccag
tcataaacaatatgggaatatcaatctccattgagtttcaattttatccc
cactagcTGAAAAGAttctactgggtctgtgagaagagggtgttaTATGC
TGACTATGCATGGTGATATATTTCATCCACTACCATCGAgggtaaaataa
aaaatcctttcCTTTTCACTAACAAAAAATacgaataaaataaaataacg
aAGGTTGCAAAAAAATCACTACCCCAATGATAGTGGATGGAAACTACCAA
GCGGCATTTATAACTGTCCCTTCGAAAATACTAAAAAAGACATCATTCTA
TCATCATTTTTCGCCTGAAATTGTTTCAGcataattttcagaaacttCAC
ATTGTGTCCAATGGAAAGTATCATCAAAATTAAGTATCATCGAAAAATTT
CTTCGTGATTTCAGCCGTTGCTGTAGTGTCACCTTTGAGTATAACTTTGT
TTGTGCATAAAAAATCCACTTTGTAAATACCCTAAAAAGGCACCTTGTCT
AACATAATTGTATCGTATTTACAAGTTCACTACGTAGTAGAACAtatctg
gcacacaacgttgtttcaacgttaatctaacttaaatggacgttgtgaac
gttagataaacgttgaaacaacgttgtgtgccagctagtATAACACAGAA
GACAAATGATAAGATAAacctctttttgaaaaaaaaatggtacccaaaat
ataaaaaCTTGGCTGTCAAAAGACAATTCAGATGTTTTTAGCTCTTCATT
TTAAGGGTACTGTTTTTAGAAAAACCACTTAAGGCCCAGCATGAAGATTG
TCGGTTTCAGACAGTTTCTAATAATATTACAGCCCAAaatctgataattt
ttttcaaaagaagtttGTGTatacactgacctttatataccctggacaaa
gcttctcaatcccagccaagcaaaatctttgatcggagtattttgaaaag
tggtaccctaatggcggcactactcgatggtggtgtaaatgcatcgacag
cgctaggtctacttttcctcaaattcttttgatgatgtagcggcgttaga
cgttgatttttaacattgcaatggcttcttctcgggtaccaaatcaaaaa
aacttcaatcaatgatggcagatattgcttggtccagggatatataaagg
tcagtggtgtATACACTTGAAATGTTATTCCAAAATCTATCACCATGCAC
CAAAATAGTTTTCTAAGCAATACGTATTTAAAAGTTTGTTATTAAaatga
aacaaagaaaacaaaacaacagtTAAATTATAATTTCTTGAGTTTCTGTC
TGTGAGCTGAGTGTGAATTAGCATATCAAGTTCATTCCCTTATTCCGACC
TAGCAAGTGGATGATAAAGATTATAAGCCGGTCGGTATAATACATCGAAA
TGACGTCCAAATTACGTCCATGACGTTAAGATTACGTACCTCATACCATC
ATATCATTCAGAATAGTCTTGGATATATACCGCAACGGATCATTTTCGAA
AGCACTCCAAAAAAGCATTGTCAGCATTTACAAACTCATGTGTACGAAAA
GAACCACACCGTTTGAAAAGCTGTGTTGAAAGAAGACCTTTCGTGGAAGT
CACGGTAAATATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073208-exon-scaffold_88-1491911889:334445..335477 | TCONS_00073208-exon-scaffold_88-1491911889:334445..335477 | Clytia hemisphaerica | exon |
| TCONS_00073208-exon-scaffold_88-1510915933:334445..335477 | TCONS_00073208-exon-scaffold_88-1510915933:334445..335477 | Clytia hemisphaerica | exon |
| TCONS_00073208-exon-scaffold_88-1575043694:334445..335477 | TCONS_00073208-exon-scaffold_88-1575043694:334445..335477 | Clytia hemisphaerica | exon |
| TCONS_00073208-exon-scaffold_88-1491911889:335583..336559 | TCONS_00073208-exon-scaffold_88-1491911889:335583..336559 | Clytia hemisphaerica | exon |
| TCONS_00073208-exon-scaffold_88-1510915933:335583..336559 | TCONS_00073208-exon-scaffold_88-1510915933:335583..336559 | Clytia hemisphaerica | exon |
| TCONS_00073208-exon-scaffold_88-1575043694:335583..336559 | TCONS_00073208-exon-scaffold_88-1575043694:335583..336559 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:334445..336559 + |
Blast
The following BLAST results are available for this feature:
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