TCONS_00073208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073208
Unique NameTCONS_00073208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073208 ID=TCONS_00073208|Name=TCONS_00073208|organism=Clytia hemisphaerica|type=transcript|length=2010bp
Nggggggggggggttggaaaaaatctcaaaatttaataagagggttggaa
taagaatgtcctgggtggaaaattttcgaaaaattaattagcgctccccc
cggctattaggtacccgagagtaatacTGTATAGTCCATCAATTTGGAGC
GCTTCCTTCGACGTTAAAAGTTTGaagaataattttaaaacgaaTTGACT
ATATTGTTGATGGTTCAAATAAATATCTTGCATTGTTCTGCAGGGTTTCT
ACAAGATCCGTAAGCAGTTTTATATATGTATAGATCGACTTCGATGCCTA
ATGGTGTACTGCTAtatgacacccccttctcaaagaccaactggaaaaat
tgtccaaaatatcgtccccggtggaaaattatcctccaatttttgtcccc
actgaaaataatcaaataaacaaatccttaGCAGAATATGATGCTTATTT
CATATCCAATGAATTTTCTGagtggaaaacaaaagaattgaaatccccag
tcataaacaatatgggaatatcaatctccattgagtttcaattttatccc
cactagcTGAAAAGAttctactgggtctgtgagaagagggtgttaTATGC
TGACTATGCATGGTGATATATTTCATCCACTACCATCGAgggtaaaataa
aaaatcctttcCTTTTCACTAACAAAAAATacgaataaaataaaataacg
aAGGTTGCAAAAAAATCACTACCCCAATGATAGTGGATGGAAACTACCAA
GCGGCATTTATAACTGTCCCTTCGAAAATACTAAAAAAGACATCATTCTA
TCATCATTTTTCGCCTGAAATTGTTTCAGcataattttcagaaacttCAC
ATTGTGTCCAATGGAAAGTATCATCAAAATTAAGTATCATCGAAAAATTT
CTTCGTGATTTCAGCCGTTGCTGTAGTGTCACCTTTGAGTATAACTTTGT
TTGTGCATAAAAAATCCACTTTGTAAATACCCTAAAAAGGCACCTTGTCT
AACATAATTGTATCGTATTTACAAGTTCACTACtATAACACAGAAGACAA
ATGATAAGATAAacctctttttgaaaaaaaaatggtacccaaaatataaa
aaCTTGGCTGTCAAAAGACAATTCAGATGTTTTTAGCTCTTCATTTTAAG
GGTACTGTTTTTAGAAAAACCACTTAAGGCCCAGCATGAAGATTGTCGGT
TTCAGACAGTTTCTAATAATATTACAGCCCAAaatctgataatttttttc
aaaagaagtttGTGTatacactgacctttatataccctggacaaagcttc
tcaatcccagccaagcaaaatctttgatcggagtattttgaaaagtggta
ccctaatggcggcactactcgatggtggtgtaaatgcatcgacagcgcta
ggtctacttttcctcaaattcttttgatgatgtagcggcgttagacgttg
atttttaacattgcaatggcttcttctcgggtaccaaatcaaaaaaactt
caatcaatgatggcagatattgcttggtccagggatatataaaggtcagt
ggtgtATACACTTGAAATGTTATTCCAAAATCTATCACCATGCACCAAAA
TAGTTTTCTAAGCAATACGTATTTAAAAGTTTGTTATTAAaatgaaacaa
agaaaacaaaacaacagtTAAATTATAATTTCTTGAGTTTCTGTCTGTGA
GCTGAGTGTGAATTAGCATATCAAGTTCATTCCCTTATTCCGACCTAGCA
AGTGGATGATAAAGATTATAAGCCGGTCGGTATAATACATCGAAATGACG
TCCAAATTACGTCCATGACGTTAAGATTACGTACCTCATACCATCATATC
ATTCAGAATAGTCTTGGATATATACCGCAACGGATCATTTTCGAAAGCAC
TCCAAAAAAGCATTGTCAGCATTTACAAACTCATGTGTACGAAAAGAACC
ACACCGTTTGAAAAGCTGTGTTGAAAGAAGACCTTTCGTGGAAGTCACGG
TAAATATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_88:334445..336559+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073208 ID=TCONS_00073208|Name=TCONS_00073208|organism=Clytia hemisphaerica|type=transcript|length=2115bp|location=Sequence derived from alignment at scaffold_88:334445..336559+ (Clytia hemisphaerica)
Nggggggggggggttggaaaaaatctcaaaatttaataagagggttggaa taagaatgtcctgggtggaaaattttcgaaaaattaattagcgctccccc cggctattaggtacccgagagtaatacTGTATAGTCCATCAATTTGGAGC GCTTCCTTCGACGTTAAAAGTTTGaagaataattttaaaacgaaTTGACT ATATTGTTGATGGTTCAAATAAATATCTTGCATTGTTCTGCAGGGTTTCT ACAAGATCCGTAAGCAGTTTTATATATGTATAGATCGACTTCGATGCCTA ATGGTGTACTGCTAtatgacacccccttctcaaagaccaactggaaaaat tgtccaaaatatcgtccccggtggaaaattatcctccaatttttgtcccc actgaaaataatcaaataaacaaatccttaGCAGAATATGATGCTTATTT CATATCCAATGAATTTTCTGagtggaaaacaaaagaattgaaatccccag tcataaacaatatgggaatatcaatctccattgagtttcaattttatccc cactagcTGAAAAGAttctactgggtctgtgagaagagggtgttaTATGC TGACTATGCATGGTGATATATTTCATCCACTACCATCGAgggtaaaataa aaaatcctttcCTTTTCACTAACAAAAAATacgaataaaataaaataacg aAGGTTGCAAAAAAATCACTACCCCAATGATAGTGGATGGAAACTACCAA GCGGCATTTATAACTGTCCCTTCGAAAATACTAAAAAAGACATCATTCTA TCATCATTTTTCGCCTGAAATTGTTTCAGcataattttcagaaacttCAC ATTGTGTCCAATGGAAAGTATCATCAAAATTAAGTATCATCGAAAAATTT CTTCGTGATTTCAGCCGTTGCTGTAGTGTCACCTTTGAGTATAACTTTGT TTGTGCATAAAAAATCCACTTTGTAAATACCCTAAAAAGGCACCTTGTCT AACATAATTGTATCGTATTTACAAGTTCACTACGTAGTAGAACAtatctg gcacacaacgttgtttcaacgttaatctaacttaaatggacgttgtgaac gttagataaacgttgaaacaacgttgtgtgccagctagtATAACACAGAA GACAAATGATAAGATAAacctctttttgaaaaaaaaatggtacccaaaat ataaaaaCTTGGCTGTCAAAAGACAATTCAGATGTTTTTAGCTCTTCATT TTAAGGGTACTGTTTTTAGAAAAACCACTTAAGGCCCAGCATGAAGATTG TCGGTTTCAGACAGTTTCTAATAATATTACAGCCCAAaatctgataattt ttttcaaaagaagtttGTGTatacactgacctttatataccctggacaaa gcttctcaatcccagccaagcaaaatctttgatcggagtattttgaaaag tggtaccctaatggcggcactactcgatggtggtgtaaatgcatcgacag cgctaggtctacttttcctcaaattcttttgatgatgtagcggcgttaga cgttgatttttaacattgcaatggcttcttctcgggtaccaaatcaaaaa aacttcaatcaatgatggcagatattgcttggtccagggatatataaagg tcagtggtgtATACACTTGAAATGTTATTCCAAAATCTATCACCATGCAC CAAAATAGTTTTCTAAGCAATACGTATTTAAAAGTTTGTTATTAAaatga aacaaagaaaacaaaacaacagtTAAATTATAATTTCTTGAGTTTCTGTC TGTGAGCTGAGTGTGAATTAGCATATCAAGTTCATTCCCTTATTCCGACC TAGCAAGTGGATGATAAAGATTATAAGCCGGTCGGTATAATACATCGAAA TGACGTCCAAATTACGTCCATGACGTTAAGATTACGTACCTCATACCATC ATATCATTCAGAATAGTCTTGGATATATACCGCAACGGATCATTTTCGAA AGCACTCCAAAAAAGCATTGTCAGCATTTACAAACTCATGTGTACGAAAA GAACCACACCGTTTGAAAAGCTGTGTTGAAAGAAGACCTTTCGTGGAAGT CACGGTAAATATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045411XLOC_045411Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073208-exon-scaffold_88-1491911889:334445..335477TCONS_00073208-exon-scaffold_88-1491911889:334445..335477Clytia hemisphaericaexon
TCONS_00073208-exon-scaffold_88-1510915933:334445..335477TCONS_00073208-exon-scaffold_88-1510915933:334445..335477Clytia hemisphaericaexon
TCONS_00073208-exon-scaffold_88-1575043694:334445..335477TCONS_00073208-exon-scaffold_88-1575043694:334445..335477Clytia hemisphaericaexon
TCONS_00073208-exon-scaffold_88-1491911889:335583..336559TCONS_00073208-exon-scaffold_88-1491911889:335583..336559Clytia hemisphaericaexon
TCONS_00073208-exon-scaffold_88-1510915933:335583..336559TCONS_00073208-exon-scaffold_88-1510915933:335583..336559Clytia hemisphaericaexon
TCONS_00073208-exon-scaffold_88-1575043694:335583..336559TCONS_00073208-exon-scaffold_88-1575043694:335583..336559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:334445..336559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0 0 0 0 0 0 0.0182485 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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