TCONS_00073207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073207
Unique NameTCONS_00073207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073207 ID=TCONS_00073207|Name=TCONS_00073207|organism=Clytia hemisphaerica|type=transcript|length=2913bp
TGTAGGGAATGTCCAAAGTGTCAAATTCATAGATAATGACACTTTTCCGA
TAACCGGGTTGGTATCCATACGGAAGGATCGTTACGGGCGCGTCTCAAAG
ACCGGAACAATCATGATCGAAGCACTGAGATTTGCAATACGTCAGGTGAA
TCagaaaaaccgaaaatttctcCATGGATACCGATTCGGGTTTAACAGAT
TTCATGATATATCCGATACAAAAGTTTATGAGATATCTGATATTGTTAAA
GATCTGTTCTTAGAAGACTATCTATTCCTAGTCGGTCCTCATTCTTCAGA
AACGTCATACGTGACGGATTTATTATCCGTCCCTTTTGGTATATCGGTAA
TTTCTTACGGCGCGACGTTTAGTGATTTCCCGCGAGTCTCTGGAGAGTCA
AGTTATACGTATCGCACAGTTCCTTCCAATACTTTCCGTATCCAAGCTTT
AGTTGACGTTGTAAAAACATTACGTTGGAATTACGTAAGTATAATCTCAT
CTTACGGTTATGACGGAGAAAGAGACGCACGTTACTTTACGCAAGAGAtt
atcaaaatgaagatatgTTTAGGCAACATATACGATTTACCACGTAACAC
AAAACAACAACGTTATAAAGACATTCTAGAAGCCGTCGACGAAGACGAAA
GTGCCCACGTCTTGCTTCTCTTCACCAATATCAAAGACTCAATGAATATC
TTAAAAGCCGTAACAAAACTCAAACTTGAAAAAcgttttctattgttttg
tGTCCTTGGTTGTTTGCACTATGATGAAGTCATTCGAGGAAACGAAGAGG
CAGCATTTGGAATGTTAAGTCTTGATTTATATAATTACCCTAACCCTCAA
TTCgaagaatatttcaaagctTTAACCCCCGGTAAACGAAACAAGAGTTA
CTTTCGAAATTTTTGGGAACAACATTTTAATTGTGTATTAAATGCTTCCG
CCCCAAATAATTTCAAACGCCCCACATGTACCggaaatgaaaaaatgacc
GATGTTGAGTTCCTGAAAGACATGTCAACACATACGATAATTTCAGCGGT
TTATGCTTTTGCCTGCGCCACAAGAAGTATTGTTCAGAAGTATTGCGGAG
TGAACCATGAAGGTGGAAGTAAGACATGCTCGCAAGGTTTATATCCGAGt
tcaacagaaaaatatttcgagaaagtttttgaatcattaaaaaacgTTAC
TTTCAATGACGGTACACTTGACCTACATCGAGCCTTTGCGAATGTTAACT
ATAATGCGACCGATTTCGgtgatttcaaagatatttcaaaatacGTTCGC
TATGATGTCTTTTACTACGGtaacgaaaataaaaacattttgataGGACA
ATGGAAAAAACGGAGAGTCCGAAATCGTAAACGTGGATTTTCATCAACAA
CAGGTTCAAgcctatcaaatttttttctcggtgTCCAAGAAAACGACGAA
CGTTTCAAATCAAGTTTGAATTTAATGAATTCACACATCGTTAAGAACTT
GACTAATATTGTATGCAGCCCACCTTGTAAACCTGGACATTACCGTGTCC
CATATGCTAATTTTGCAAAACGTTCGTGCTGCTTCACATGTAGCCCTTGT
CCTGAGCATCATATCTCAATCAATGGAACATGCTCTCAATGTGCAATGAC
CGAAAAACAAGTCAACAATCAATGTGTCATGTTACCTCAAATATGGATTG
GCGTGTTAAGTGATATCCCTTCCATCGTCTTCAGTTTTCTATCAGTTCTC
GGTGCAATATCAGTCGTTTTTGTAGCTTTGATTTTCGTACGTTTTAATGA
CCATAAACTTGTTCGCGCGTCCGGACGCGATCTCTTCTATATCATGTTGT
TCGGTATCTTCTTGACTTTTATAATACCGTTTACGGTTTTAACTAAACCG
TCAAGTGCAGCGTGTGTAGCACGTGGTATATTGCCTGGGCTCGCCTTCCT
TACCTGTTACGCACCCCTATTCCTGAAGACAAATCGTATCTACCGTATTT
TCTTGCACGGCAAGCGAACCACTCAACCACCGAATTTAATTAGCCCGCAA
TCACAAATCGTTATCTTGTGTGGTATAACAGCTGTTCAAATTTTATTATC
AAGTGTATTTTTCGCCTCCAAAACACCGGACCCCGAACTAGAAGTAAATC
CTGAACGTACCCGAATTTTACTGAAATGCAAAGGCGATTCAAGCCCGATC
TTAATGTTGTTGAATCTTATCATATCTGTAGTGTTCATGGTGTCGTGTAC
CTTCCTCGCATTCAAAACAAGACATTTCCCTAAAAACTTTAACGAAGCAA
AAGACATTGGTGTTACATTATACATAACATGTgttatctggtctgtattt
ttacCAGCCTTCTTTCTAACAGTACCTTGGAGATTGGAATTTGTTCGAGA
ATACCTTATGAGTGGATTAGCAATCGTGCTTGGTTATACGACCCTATTTG
GACTCTTTGGGCGTAAGTTAAAGATTCTGTTTACCGGTGATAAAGCAGAC
GATAGTGTCACGTCAAAGGAACACAAGAACGTATGCAATAGTGTTGTGTC
ACGCTTCACGTCAATCAGGCACCGTATTTATTCGGAGACGCCGTCAAACC
ATACGTCTAATAATGGtgtcaaattcaaaatgattttaaatgATTCAAAA
TCTGAGTGTTCGTCCGAGAATAATAATGATTGTGAATCAACGAATTGTCG
GACAGATGTGGATACAGCAAATGAAAGTGTTGTTGAGACGACGGAAACAT
AAgaacgtgtttttttataagaacatccaaaattgtgaagccttttaaaa
tgttcttaaaatgttcttattttcatcattttgtgaatatttttgtccat
tttcctaagaaattcggtgttttagagtctgcaaagccttaaaatgttct
tagcttgctCTTC
Run BLAST on NCBI

protein sequence of TCONS_00073207-protein

>TCONS_00073207-protein ID=TCONS_00073207-protein|Name=TCONS_00073207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=916bp
VGNVQSVKFIDNDTFPITGLVSIRKDRYGRVSKTGTIMIEALRFAIRQVN
QKNRKFLHGYRFGFNRFHDISDTKVYEISDIVKDLFLEDYLFLVGPHSSE
TSYVTDLLSVPFGISVISYGATFSDFPRVSGESSYTYRTVPSNTFRIQAL
VDVVKTLRWNYVSIISSYGYDGERDARYFTQEIIKMKICLGNIYDLPRNT
KQQRYKDILEAVDEDESAHVLLLFTNIKDSMNILKAVTKLKLEKRFLLFC
VLGCLHYDEVIRGNEEAAFGMLSLDLYNYPNPQFEEYFKALTPGKRNKSY
FRNFWEQHFNCVLNASAPNNFKRPTCTGNEKMTDVEFLKDMSTHTIISAV
YAFACATRSIVQKYCGVNHEGGSKTCSQGLYPSSTEKYFEKVFESLKNVT
FNDGTLDLHRAFANVNYNATDFGDFKDISKYVRYDVFYYGNENKNILIGQ
WKKRRVRNRKRGFSSTTGSSLSNFFLGVQENDERFKSSLNLMNSHIVKNL
TNIVCSPPCKPGHYRVPYANFAKRSCCFTCSPCPEHHISINGTCSQCAMT
EKQVNNQCVMLPQIWIGVLSDIPSIVFSFLSVLGAISVVFVALIFVRFND
HKLVRASGRDLFYIMLFGIFLTFIIPFTVLTKPSSAACVARGILPGLAFL
TCYAPLFLKTNRIYRIFLHGKRTTQPPNLISPQSQIVILCGITAVQILLS
SVFFASKTPDPELEVNPERTRILLKCKGDSSPILMLLNLIISVVFMVSCT
FLAFKTRHFPKNFNEAKDIGVTLYITCVIWSVFLPAFFLTVPWRLEFVRE
YLMSGLAIVLGYTTLFGLFGRKLKILFTGDKADDSVTSKEHKNVCNSVVS
RFTSIRHRIYSETPSNHTSNNGVKFKMILNDSKSECSSENNNDCESTNCR
TDVDTANESVVETTET
Run BLAST on NCBI

transcript from alignment at scaffold_88:219769..222920+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073207 ID=TCONS_00073207|Name=TCONS_00073207|organism=Clytia hemisphaerica|type=transcript|length=3152bp|location=Sequence derived from alignment at scaffold_88:219769..222920+ (Clytia hemisphaerica)
TGTAGGGAATGTCCAAAGTGTCAAATTCATAGGTAAGAATGGTTGGTCct
caaatatatttttgctaCTAGTAAATGAATGGACTCATTATCTCCATTCT
CGGTCTGCCTTAGAAGGCTGTCACATTTGGTTCTagaaataattgaaaat
accaaatataaattttaaatcaacttTTGTACAAAAAGTTTctgaaaagt
tgagacttttgCGCGCAGAAATAacaaaaactttgttttttttctgagat
ATTCTTTCCTTTCCGTTACAGATAATGACACTTTTCCGATAACCGGGTTG
GTATCCATACGGAAGGATCGTTACGGGCGCGTCTCAAAGACCGGAACAAT
CATGATCGAAGCACTGAGATTTGCAATACGTCAGGTGAATCagaaaaacc
gaaaatttctcCATGGATACCGATTCGGGTTTAACAGATTTCATGATATA
TCCGATACAAAAGTTTATGAGATATCTGATATTGTTAAAGATCTGTTCTT
AGAAGACTATCTATTCCTAGTCGGTCCTCATTCTTCAGAAACGTCATACG
TGACGGATTTATTATCCGTCCCTTTTGGTATATCGGTAATTTCTTACGGC
GCGACGTTTAGTGATTTCCCGCGAGTCTCTGGAGAGTCAAGTTATACGTA
TCGCACAGTTCCTTCCAATACTTTCCGTATCCAAGCTTTAGTTGACGTTG
TAAAAACATTACGTTGGAATTACGTAAGTATAATCTCATCTTACGGTTAT
GACGGAGAAAGAGACGCACGTTACTTTACGCAAGAGAttatcaaaatgaa
gatatgTTTAGGCAACATATACGATTTACCACGTAACACAAAACAACAAC
GTTATAAAGACATTCTAGAAGCCGTCGACGAAGACGAAAGTGCCCACGTC
TTGCTTCTCTTCACCAATATCAAAGACTCAATGAATATCTTAAAAGCCGT
AACAAAACTCAAACTTGAAAAAcgttttctattgttttgtGTCCTTGGTT
GTTTGCACTATGATGAAGTCATTCGAGGAAACGAAGAGGCAGCATTTGGA
ATGTTAAGTCTTGATTTATATAATTACCCTAACCCTCAATTCgaagaata
tttcaaagctTTAACCCCCGGTAAACGAAACAAGAGTTACTTTCGAAATT
TTTGGGAACAACATTTTAATTGTGTATTAAATGCTTCCGCCCCAAATAAT
TTCAAACGCCCCACATGTACCggaaatgaaaaaatgaccGATGTTGAGTT
CCTGAAAGACATGTCAACACATACGATAATTTCAGCGGTTTATGCTTTTG
CCTGCGCCACAAGAAGTATTGTTCAGAAGTATTGCGGAGTGAACCATGAA
GGTGGAAGTAAGACATGCTCGCAAGGTTTATATCCGAGttcaacagaaaa
atatttcgagaaagtttttgaatcattaaaaaacgTTACTTTCAATGACG
GTACACTTGACCTACATCGAGCCTTTGCGAATGTTAACTATAATGCGACC
GATTTCGgtgatttcaaagatatttcaaaatacGTTCGCTATGATGTCTT
TTACTACGGtaacgaaaataaaaacattttgataGGACAATGGAAAAAAC
GGAGAGTCCGAAATCGTAAACGTGGATTTTCATCAACAACAGGTTCAAgc
ctatcaaatttttttctcggtgTCCAAGAAAACGACGAACGTTTCAAATC
AAGTTTGAATTTAATGAATTCACACATCGTTAAGAACTTGACTAATATTG
TATGCAGCCCACCTTGTAAACCTGGACATTACCGTGTCCCATATGCTAAT
TTTGCAAAACGTTCGTGCTGCTTCACATGTAGCCCTTGTCCTGAGCATCA
TATCTCAATCAATGGAACATGCTCTCAATGTGCAATGACCGAAAAACAAG
TCAACAATCAATGTGTCATGTTACCTCAAATATGGATTGGCGTGTTAAGT
GATATCCCTTCCATCGTCTTCAGTTTTCTATCAGTTCTCGGTGCAATATC
AGTCGTTTTTGTAGCTTTGATTTTCGTACGTTTTAATGACCATAAACTTG
TTCGCGCGTCCGGACGCGATCTCTTCTATATCATGTTGTTCGGTATCTTC
TTGACTTTTATAATACCGTTTACGGTTTTAACTAAACCGTCAAGTGCAGC
GTGTGTAGCACGTGGTATATTGCCTGGGCTCGCCTTCCTTACCTGTTACG
CACCCCTATTCCTGAAGACAAATCGTATCTACCGTATTTTCTTGCACGGC
AAGCGAACCACTCAACCACCGAATTTAATTAGCCCGCAATCACAAATCGT
TATCTTGTGTGGTATAACAGCTGTTCAAATTTTATTATCAAGTGTATTTT
TCGCCTCCAAAACACCGGACCCCGAACTAGAAGTAAATCCTGAACGTACC
CGAATTTTACTGAAATGCAAAGGCGATTCAAGCCCGATCTTAATGTTGTT
GAATCTTATCATATCTGTAGTGTTCATGGTGTCGTGTACCTTCCTCGCAT
TCAAAACAAGACATTTCCCTAAAAACTTTAACGAAGCAAAAGACATTGGT
GTTACATTATACATAACATGTgttatctggtctgtatttttacCAGCCTT
CTTTCTAACAGTACCTTGGAGATTGGAATTTGTTCGAGAATACCTTATGA
GTGGATTAGCAATCGTGCTTGGTTATACGACCCTATTTGGACTCTTTGGG
CGTAAGTTAAAGATTCTGTTTACCGGTGATAAAGCAGACGATAGTGTCAC
GTCAAAGGAACACAAGAACGTATGCAATAGTGTTGTGTCACGCTTCACGT
CAATCAGGCACCGTATTTATTCGGAGACGCCGTCAAACCATACGTCTAAT
AATGGtgtcaaattcaaaatgattttaaatgATTCAAAATCTGAGTGTTC
GTCCGAGAATAATAATGATTGTGAATCAACGAATTGTCGGACAGATGTGG
ATACAGCAAATGAAAGTGTTGTTGAGACGACGGAAACATAAgaacgtgtt
tttttataagaacatccaaaattgtgaagccttttaaaatgttcttaaaa
tgttcttattttcatcattttgtgaatatttttgtccattttcctaagaa
attcggtgttttagagtctgcaaagccttaaaatgttcttagcttgctCT
TC

Coding sequence (CDS) from alignment at scaffold_88:219769..222920+

>TCONS_00073207 ID=TCONS_00073207|Name=TCONS_00073207|organism=Clytia hemisphaerica|type=CDS|length=5502bp|location=Sequence derived from alignment at scaffold_88:219769..222920+ (Clytia hemisphaerica)
GTAGGGAATGTCCAAAGTGTCAAATTCATAGATAATGACACTTTTCCGAT
AACCGGGTTGGTATCCATACGGAAGGATCGTTACGGGCGCGTCTCAAAGA
CCGGAACAATCATGATCGAAGCACTGAGATTTGCAATACGTCAGGTGAAT
CagaaaaaccgaaaatttctcCATGGATACCGATTCGGGTTTAACAGATT
TCATGATATATCCGATACAAAAGTTTATGAGATATCTGATATTGTTAAAG
ATCTGTTCTTAGAAGACTATCTATTCCTAGTCGGTCCTCATTCTTCAGAA
ACGTCATACGTGACGGATTTATTATCCGTCCCTTTTGGTATATCGGTAAT
TTCTTACGGCGCGACGTTTAGTGATTTCCCGCGAGTCTCTGGAGAGTCAA
GTTATACGTATCGCACAGTTCCTTCCAATACTTTCCGTATCCAAGCTTTA
GTTGACGTTGTAAAAACATTACGTTGGAATTACGTAAGTATAATCTCATC
TTACGGTTATGACGGAGAAAGAGACGCACGTTACTTTACGCAAGAGAtta
tcaaaatgaagatatgTTTAGGCAACATATACGATTTACCACGTAACACA
AAACAACAACGTTATAAAGACATTCTAGAAGCCGTCGACGAAGACGAAAG
TGCCCACGTCTTGCTTCTCTTCACCAATATCAAAGACTCAATGAATATCT
TAAAAGCCGTAACAAAACTCAAACTTGAAAAAcgttttctattgttttgt
GTCCTTGGTTGTTTGCACTATGATGAAGTCATTCGAGGAAACGAAGAGGC
AGCATTTGGAATGTTAAGTCTTGATTTATATAATTACCCTAACCCTCAAT
TCgaagaatatttcaaagctTTAACCCCCGGTAAACGAAACAAGAGTTAC
TTTCGAAATTTTTGGGAACAACATTTTAATTGTGTATTAAATGCTTCCGC
CCCAAATAATTTCAAACGCCCCACATGTACCggaaatgaaaaaatgaccG
ATGTTGAGTTCCTGAAAGACATGTCAACACATACGATAATTTCAGCGGTT
TATGCTTTTGCCTGCGCCACAAGAAGTATTGTTCAGAAGTATTGCGGAGT
GAACCATGAAGGTGGAAGTAAGACATGCTCGCAAGGTTTATATCCGAGtt
caacagaaaaatatttcgagaaagtttttgaatcattaaaaaacgTTACT
TTCAATGACGGTACACTTGACCTACATCGAGCCTTTGCGAATGTTAACTA
TAATGCGACCGATTTCGgtgatttcaaagatatttcaaaatacGTTCGCT
ATGATGTCTTTTACTACGGtaacgaaaataaaaacattttgataGGACAA
TGGAAAAAACGGAGAGTCCGAAATCGTAAACGTGGATTTTCATCAACAAC
AGGTTCAAgcctatcaaatttttttctcggtgTCCAAGAAAACGACGAAC
GTTTCAAATCAAGTTTGAATTTAATGAATTCACACATCGTTAAGAACTTG
ACTAATATTGTATGCAGCCCACCTTGTAAACCTGGACATTACCGTGTCCC
ATATGCTAATTTTGCAAAACGTTCGTGCTGCTTCACATGTAGCCCTTGTC
CTGAGCATCATATCTCAATCAATGGAACATGCTCTCAATGTGCAATGACC
GAAAAACAAGTCAACAATCAATGTGTCATGTTACCTCAAATATGGATTGG
CGTGTTAAGTGATATCCCTTCCATCGTCTTCAGTTTTCTATCAGTTCTCG
GTGCAATATCAGTCGTTTTTGTAGCTTTGATTTTCGTACGTTTTAATGAC
CATAAACTTGTTCGCGCGTCCGGACGCGATCTCTTCTATATCATGTTGTT
CGGTATCTTCTTGACTTTTATAATACCGTTTACGGTTTTAACTAAACCGT
CAAGTGCAGCGTGTGTAGCACGTGGTATATTGCCTGGGCTCGCCTTCCTT
ACCTGTTACGCACCCCTATTCCTGAAGACAAATCGTATCTACCGTATTTT
CTTGCACGGCAAGCGAACCACTCAACCACCGAATTTAATTAGCCCGCAAT
CACAAATCGTTATCTTGTGTGGTATAACAGCTGTTCAAATTTTATTATCA
AGTGTATTTTTCGCCTCCAAAACACCGGACCCCGAACTAGAAGTAAATCC
TGAACGTACCCGAATTTTACTGAAATGCAAAGGCGATTCAAGCCCGATCT
TAATGTTGTTGAATCTTATCATATCTGTAGTGTTCATGGTGTCGTGTACC
TTCCTCGCATTCAAAACAAGACATTTCCCTAAAAACTTTAACGAAGCAAA
AGACATTGGTGTTACATTATACATAACATGTgttatctggtctgtatttt
tacCAGCCTTCTTTCTAACAGTACCTTGGAGATTGGAATTTGTTCGAGAA
TACCTTATGAGTGGATTAGCAATCGTGCTTGGTTATACGACCCTATTTGG
ACTCTTTGGGCGTAAGTTAAAGATTCTGTTTACCGGTGATAAAGCAGACG
ATAGTGTCACGTCAAAGGAACACAAGAACGTATGCAATAGTGTTGTGTCA
CGCTTCACGTCAATCAGGCACCGTATTTATTCGGAGACGCCGTCAAACCA
TACGTCTAATAATGGtgtcaaattcaaaatgattttaaatgATTCAAAAT
CTGAGTGTTCGTCCGAGAATAATAATGATTGTGAATCAACGAATTGTCGG
ACAGATGTGGATACAGCAAATGAAAGTGTTGTTGAGACGACGGAAACATA
AGTAGGGAATGTCCAAAGTGTCAAATTCATAGATAATGACACTTTTCCGA
TAACCGGGTTGGTATCCATACGGAAGGATCGTTACGGGCGCGTCTCAAAG
ACCGGAACAATCATGATCGAAGCACTGAGATTTGCAATACGTCAGGTGAA
TCagaaaaaccgaaaatttctcCATGGATACCGATTCGGGTTTAACAGAT
TTCATGATATATCCGATACAAAAGTTTATGAGATATCTGATATTGTTAAA
GATCTGTTCTTAGAAGACTATCTATTCCTAGTCGGTCCTCATTCTTCAGA
AACGTCATACGTGACGGATTTATTATCCGTCCCTTTTGGTATATCGGTAA
TTTCTTACGGCGCGACGTTTAGTGATTTCCCGCGAGTCTCTGGAGAGTCA
AGTTATACGTATCGCACAGTTCCTTCCAATACTTTCCGTATCCAAGCTTT
AGTTGACGTTGTAAAAACATTACGTTGGAATTACGTAAGTATAATCTCAT
CTTACGGTTATGACGGAGAAAGAGACGCACGTTACTTTACGCAAGAGAtt
atcaaaatgaagatatgTTTAGGCAACATATACGATTTACCACGTAACAC
AAAACAACAACGTTATAAAGACATTCTAGAAGCCGTCGACGAAGACGAAA
GTGCCCACGTCTTGCTTCTCTTCACCAATATCAAAGACTCAATGAATATC
TTAAAAGCCGTAACAAAACTCAAACTTGAAAAAcgttttctattgttttg
tGTCCTTGGTTGTTTGCACTATGATGAAGTCATTCGAGGAAACGAAGAGG
CAGCATTTGGAATGTTAAGTCTTGATTTATATAATTACCCTAACCCTCAA
TTCgaagaatatttcaaagctTTAACCCCCGGTAAACGAAACAAGAGTTA
CTTTCGAAATTTTTGGGAACAACATTTTAATTGTGTATTAAATGCTTCCG
CCCCAAATAATTTCAAACGCCCCACATGTACCggaaatgaaaaaatgacc
GATGTTGAGTTCCTGAAAGACATGTCAACACATACGATAATTTCAGCGGT
TTATGCTTTTGCCTGCGCCACAAGAAGTATTGTTCAGAAGTATTGCGGAG
TGAACCATGAAGGTGGAAGTAAGACATGCTCGCAAGGTTTATATCCGAGt
tcaacagaaaaatatttcgagaaagtttttgaatcattaaaaaacgTTAC
TTTCAATGACGGTACACTTGACCTACATCGAGCCTTTGCGAATGTTAACT
ATAATGCGACCGATTTCGgtgatttcaaagatatttcaaaatacGTTCGC
TATGATGTCTTTTACTACGGtaacgaaaataaaaacattttgataGGACA
ATGGAAAAAACGGAGAGTCCGAAATCGTAAACGTGGATTTTCATCAACAA
CAGGTTCAAgcctatcaaatttttttctcggtgTCCAAGAAAACGACGAA
CGTTTCAAATCAAGTTTGAATTTAATGAATTCACACATCGTTAAGAACTT
GACTAATATTGTATGCAGCCCACCTTGTAAACCTGGACATTACCGTGTCC
CATATGCTAATTTTGCAAAACGTTCGTGCTGCTTCACATGTAGCCCTTGT
CCTGAGCATCATATCTCAATCAATGGAACATGCTCTCAATGTGCAATGAC
CGAAAAACAAGTCAACAATCAATGTGTCATGTTACCTCAAATATGGATTG
GCGTGTTAAGTGATATCCCTTCCATCGTCTTCAGTTTTCTATCAGTTCTC
GGTGCAATATCAGTCGTTTTTGTAGCTTTGATTTTCGTACGTTTTAATGA
CCATAAACTTGTTCGCGCGTCCGGACGCGATCTCTTCTATATCATGTTGT
TCGGTATCTTCTTGACTTTTATAATACCGTTTACGGTTTTAACTAAACCG
TCAAGTGCAGCGTGTGTAGCACGTGGTATATTGCCTGGGCTCGCCTTCCT
TACCTGTTACGCACCCCTATTCCTGAAGACAAATCGTATCTACCGTATTT
TCTTGCACGGCAAGCGAACCACTCAACCACCGAATTTAATTAGCCCGCAA
TCACAAATCGTTATCTTGTGTGGTATAACAGCTGTTCAAATTTTATTATC
AAGTGTATTTTTCGCCTCCAAAACACCGGACCCCGAACTAGAAGTAAATC
CTGAACGTACCCGAATTTTACTGAAATGCAAAGGCGATTCAAGCCCGATC
TTAATGTTGTTGAATCTTATCATATCTGTAGTGTTCATGGTGTCGTGTAC
CTTCCTCGCATTCAAAACAAGACATTTCCCTAAAAACTTTAACGAAGCAA
AAGACATTGGTGTTACATTATACATAACATGTgttatctggtctgtattt
ttacCAGCCTTCTTTCTAACAGTACCTTGGAGATTGGAATTTGTTCGAGA
ATACCTTATGAGTGGATTAGCAATCGTGCTTGGTTATACGACCCTATTTG
GACTCTTTGGGCGTAAGTTAAAGATTCTGTTTACCGGTGATAAAGCAGAC
GATAGTGTCACGTCAAAGGAACACAAGAACGTATGCAATAGTGTTGTGTC
ACGCTTCACGTCAATCAGGCACCGTATTTATTCGGAGACGCCGTCAAACC
ATACGTCTAATAATGGtgtcaaattcaaaatgattttaaatgATTCAAAA
TCTGAGTGTTCGTCCGAGAATAATAATGATTGTGAATCAACGAATTGTCG
GACAGATGTGGATACAGCAAATGAAAGTGTTGTTGAGACGACGGAAACAT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045410XLOC_045410Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073207-proteinTCONS_00073207-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073207-exon-scaffold_88-1491911889:219769..219800TCONS_00073207-exon-scaffold_88-1491911889:219769..219800Clytia hemisphaericaexon
TCONS_00073207-exon-scaffold_88-1510915933:219769..219800TCONS_00073207-exon-scaffold_88-1510915933:219769..219800Clytia hemisphaericaexon
TCONS_00073207-exon-scaffold_88-1575043694:219769..219800TCONS_00073207-exon-scaffold_88-1575043694:219769..219800Clytia hemisphaericaexon
TCONS_00073207-exon-scaffold_88-1491911889:220040..222920TCONS_00073207-exon-scaffold_88-1491911889:220040..222920Clytia hemisphaericaexon
TCONS_00073207-exon-scaffold_88-1510915933:220040..222920TCONS_00073207-exon-scaffold_88-1510915933:220040..222920Clytia hemisphaericaexon
TCONS_00073207-exon-scaffold_88-1575043694:220040..222920TCONS_00073207-exon-scaffold_88-1575043694:220040..222920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:219769..222920 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.157446	0.204712	0.0744527	0.122789	0.123856	0.0838907	1.50387	1.43707	0.464367	0.794315	0.372198	0.472221	0.951135	0.715902	0.111754	0.192753	0.76826	0.524961	2.06421	1.57625	1.27105	0.742512	0.631834	0.984735	0.98608	0.930342	1.09744	0.672008	0.138634	0.118697
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR017978GPCR_3_C
IPR001828ANF_lig-bd_rcpt
IPR011500GPCR_3_9-Cys_dom
IPR028082Peripla_BP_I
IPR009030Growth_fac_rcpt_
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00073207 vs. Swiss-Prot (Human)
Match: GRM7 (Metabotropic glutamate receptor 7 OS=Homo sapiens GN=GRM7 PE=1 SV=1)

HSP 1 Score: 320.087 bits (819), Expect = 1.404e-93
Identity = 228/730 (31.23%), Postives = 348/730 (47.67%), Query Frame = 2 
Query:  263 EDYLFLVGPHSSETSYVTDLLSVPFGISVISYGATFSDFPRVSGESSYTY--RTVPSNTFRIQALVDVVKTLRWNYVSIISSYGYDGERDARYFTQEIIKMK--ICLGNIYDLPRNTKQQR--YKDILEAVDEDESAHVLLLFTNIKDSMNILKAVTKLKLEKRFLLFCVLGCLHYDEVIRGNEEAAFGMLSLDLYNYPNPQFEEYFKALT-PGKRNKSYFRNFWEQHFNCVL--NASAPNNFKRPTCTGNEKM-TDVEFLKDMSTHTIISAVYAFACATRSIVQKYCGVNHEGGSKTCSQGLYPSSTEKYFEKVFESLKNVTFNDGTLDLHRAFANVNYNATDFGDFKDISKYVRYDVFYYGNENKN----ILIGQWKKRRVRNRKRGFSSTTGSSLSNFFLGVQENDERFKSSLNLMNSHIVKNLTNIVCSPPCKPGHYRVPYANFAKRSCCFTCSPCPEHHISING-TCSQCAMTEKQVNNQ--CVMLPQI---WIGVLSDIPSIVFSFLSVLGAISVVFVALIFVRFNDHKLVRASGRDLFYIMLFGIFLTFIIPFTVLTKPSSAACVARGILPGLAFLTCYAPLFLKTNRIYRIFLHGKRTTQPPNLISPQSQIVILCGITAVQILLSSVFFASKTP------DPELEVNPERTRILLKCKGDSSPILMLLNLIISVVFMVSCTFLAFKTRHFPKNFNEAKDIGVTLYITCVIWSVFLPAFFLTV 2374
            E  + ++G   S  S +   +   F I  ISY +T    P +S +  Y +  R VP ++F+ QA+VD+VK L WNYVS ++S G  GE+    FTQ I K    +C+     +P+  K +   +  I++ + +  ++  +++F N +D   IL A  +      FL             +  +E+ A G +++         F+ YF + T    R   +F  +WE++FNC L  + S   +  R  CTG E++  D  + ++     +I AVYA A A   + +  C            +G+ P   +   +K+ + ++NV FN        A   V +N    GD        RYD+F Y   N +     LIGQW                              DE   +  ++     V+ +   VC+ PCKPG  +          CC+TC PC  +    +  TC  C   ++   N+  C  +P I   W    + IP     FL++LG I+ +FV   F+R+ND  +VRASGR+L Y++L GIFL +II F ++ KP  A C  R +  GL     YA L  KTNRIYRIF  GK++   P LISP SQ+ I   + +VQ+L   ++F    P      D    +NPE+ R +LKC  D + + ++ +L  S++ MV+CT  A KTR  P+NFNEAK IG T+Y TC++W  F+P FF T 
Sbjct:  148 EKVVGVIGASGSSVSIMVANILRLFQIPQISYASTA---PELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQ-ISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDR-KCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD---------YRGVCPEMEQAGGKKLLKYIRNVNFNGS------AGTPVMFNKN--GDAPG-----RYDIFQYQTTNTSNPGYRLIGQW-----------------------------TDELQLNIEDMQWGKGVREIPASVCTLPCKPGQRK---KTQKGTPCCWTCEPCDGYQYQFDEMTCQHCPYDQRPNENRTGCQDIPIIKLEWHSPWAVIPV----FLAMLGIIATIFVMATFIRYNDTPIVRASGRELSYVLLTGIFLCYIITFLMIAKPDVAVCSFRRVFLGLGMCISYAALLTKTNRIYRIFEQGKKSVTAPRLISPTSQLAITSSLISVQLLGVFIWFGVDPPNIIIDYDEHKTMNPEQARGVLKC--DITDLQIICSLGYSILLMVTCTVYAIKTRGVPENFNEAKPIGFTMYTTCIVWLAFIPIFFGTA 812
The following BLAST results are available for this feature:
BLAST of TCONS_00073207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM71.404e-9331.23Metabotropic glutamate receptor 7 OS=Homo sapiens ... [more]
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