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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073203 ID=TCONS_00073203|Name=TCONS_00073203|organism=Clytia hemisphaerica|type=transcript|length=1321bp
TATGAACCCTGAGATCCGCAACGAGGTGGAgttgaaaaaacaacgaaggG
AAGAACAACGGATTGACGAACTGAAGAAAGCAGGAAAGAGTAAAGAAGAA
ATCGAAGAAGCATTAAGCAAATACAAAggaaaagagaaagagaagaaaga
agTCATTGTTTGTCATACCGTTCAAGATGAACAGAAACGGAAATTGGACA
GATTGATGAGTAACCCGGAAGAGCTAGATGAAGAATTTCAAGCGAAAATG
GAGGCGAATAAAGAAAAGGCCGAAGATTCAACGAACAAAAAGCGAGCTAA
AAGGCAAcgaagaaaacagaaaaaggcAATGGCAAAGAAATCTAAGAAAT
CTGAAGCAGATCAACAAGAGAAAGAACAAGAGGATAGCGACGAAGAAAAA
AGCGATCAAGAAAGtgaaggagaagaagaaaacaACAAAGAACCAGAAGA
ACCTCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGATACGTT
TTCGCTATCCCNgaagaagaagaagaaaacaacAAAGAACCAGAAGAACC
TCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGATACGTTTTC
GCTATCCCATACTCTCTGAATGGCATTTGCTTAGACGTTAAAAAGAAAGC
TAAGGTTGTCCTTTTTGCTGTTGTTTCATTTCCTATGTTTGTTGGTTGGC
TTGTTAGGTGGTCActgaaaatatacaaaaacgAGAAGTTTCGTAAGGCC
ATATTTCGAGTTCTTTTACAACAACTACTCGGCATCCAATTAGGTAGTGA
TGAACGAAACTTatggttgttgttgttattaaaGGAACCGAGAAAGTCTA
TTTTTCCCTTCTGCTGCGAAACTAGATTCACTCTCAATATGATGGTGGTG
ATGGTATATTACTCCTCGAAGTTAGTGAAGTATAAAGGTTTCACATAGAT
CAGAGCAAATTCTGCATTACCGGAACTGAAAAGACGACATTTGGGAACTC
GAAAATGTAATGCTAAACGTAATATAACGGATAGGAGTGAATCAATCTCT
TTTGATACTGGAAAACTGTTTGGATAAAAACAACATTGAATATTACGAAC
TTCGTCAACGTATGTTGACTCTTAAACAATGAAAGTTGTCCTTGTAAATA
gttattttttagtatttattATTCCACGTCCATTTAAATTTTCCAGTAGA
TTAACTGACCAAGTTTTccagaaagtaaaaaatataaccCAAtgatttac
acgcttttttataagaacacaaggctgaaAAGTAGCCAAAACCTATGAAC
AAAtcaagaacaatctgagcc Run BLAST on NCBI transcript from alignment at scaffold_88:177175..181899+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073203 ID=TCONS_00073203|Name=TCONS_00073203|organism=Clytia hemisphaerica|type=transcript|length=4725bp|location=Sequence derived from alignment at scaffold_88:177175..181899+ (Clytia hemisphaerica)
TATGAACCCTGAGATCCGCAACGAGGTGGAgttgaaaaaacaacgaaggG
AAGAACAACGGATTGACGAACTGAAGAAAGCAGGAAAGAGTAAAGAAGAA
ATCGAAGAAGCATTAAGCAAATACAAAggaaaagagaaagagaagaaaga
agTCATTGTTTGTCATACCGTTCAAGATGAACAGAAACGGAAATTGGACA
GATTGATGAGTAACCCGGTAAGTACAGTGTGTCCTAAACCAGCGGATAAA
TTTTTATGTACAGTAAAATCGTCCTTATTTATGAAAACTTTTATGACTTC
TATACGCCTGTTTAGCAtgtattaccgagtttatgtatcagaggatatcg
agggcgacggtaagtgaaatgatacaaaacaaagtcgataatTGATacac
ggctctatatcgcctgtGCTCACCTAAATagacgacggtatcttggtgtt
tttaccgtcgtcgagcaaagtggacggtgattttggagacatgtcaactt
tgctttataccgtccccctagatttatctcgaatacataaactcgctata
gACTCTGTTGAGGAGCAATCTCTACTTCTCCGTTCACTGCAAGAACACTC
TCTGGTGACAACAACAGTCTATGCTCACTTACCCAAGCCGCGCTGATTAG
TTCTGGGAAGgacgaaacacgtgtctgcggatagatGACTTGTCTACTTG
ATATTTTAATCTCAAAAgcctattcaatcatcttgagAATTGAATATAta
ttgattgaacagagaattGCAATTTTATTTACATCAAATTTGTAAAGCAT
CTGTTAGTCTATTATAAAAGTTTTACACTTACAAATATATCTAGGCTGAA
AAAATGAAACCAAATCAAAACATCGTCAAAGCATTTGTCCACTCTCTGAA
ATTTCAAGAGAtttcatgacgtcataagtTAAAAATTTTATCCCAAATAA
GTGAATTCCCAAATAACTTTGACTTGCACAATTATTATATAACCTCTATG
CTCACAATAGTTAGAAGATTTGAAAGCGCTAAGCGCTAAACGTTTTgaat
caatgataattttttttcaatttacagAATAAAGAAGTTTACATTCCTCA
GCAACGCAAAGAATGGAAACCTCGCGACCCGGCCGAGTTTGTGCGCCATG
TTATGGGGTCTAGTGCTGGGGCTGGGAGTGGCGAATTTCACGTGTATCGA
AACATAAGGAAGCGGGAATTAAAACGTCAAGAATACATGGAAAAGAAAAC
TATGAAGGTATGTTGAAAGGGGAGTACCGGCCTTCAATGCCAATGGGAAC
ATTCCATTGAAGTTGAcagtatatttttttttcacaaattaaattgACCC
TGTGagacaaaatttattggcaTTGCAACCATGTCCAGTTATCGAATATT
TCCGGACTTTCACACCTCGTATTGCCAGAGCGACTCCTTGTTGAGTAAAG
GGCGATGAACTTTTTTCGTATTTTCCCGGACTGTCTCTTTTAAAAAAGAG
GTCTAAAATCCTCACATTTTAATATAAAATATGCTTTTTTATTTAGGAAG
AGCTAGATGAAGAATTTCAAGCGAAAATGGAGGCGAATAAAGAAAAGGCC
GAAGATTCAACGAACAAAAAGCGAGCTAAAAGGTAACTACTCTATCTCTT
CCCAACGCTTCTTATTTTATGAGAATCTTACCCTTTTCATCTGGCTCTTG
ATAtacatgacgtaatcttttatacggaaacaccggAAAAACACTgggcg
tttgccaccagttttgaatttaaacaatgaaactggtggcaaacgcccgg
tcttttcgtgtgtttccgtataaaagattacgtcatgaatatcaagaatt
caACGCGACGTAAGTCAAATAGACCTAACGATATTCCCAAGtaaattaaa
ttatttaaaggaattttgagctgtgacatcgcattttatttttattttaa
caaaaaagagCAAAGTCGAATTCAAATGAATTTACAATGGAATATTTTAG
CCTGAAAATAGATGAAAGATGAAAATAGATCTTATTCATTTTGTTTTCCT
TCTTCAGGCAAcgaagaaaacagaaaaaggcAATGGCAAAGAAATCTAAG
AAATCTGAAGGTATGAGTGGAAAATATATATCTGGATATTGTTTGATTTT
TGGCTGAAAGCTGATAATTCTTAAGGTGTAAAATTAGCAATTAGAGCGCC
TTTCAATGTTCACCAAAAACCAAACTTTTCGTTGTACCCTTTCTATATAA
TAGCAATCCCCCATATTGGTCAGCCCCCTTAAAAACGGGCCTACTCTGCA
CGGAGTTGCCCGTCGTTCGTCGTTAAGAAAATTCAagtcgcaagctcggt
cgttgcTTGACCACGGGCAATACTTCTAAGTGCAGCCCTCGCAAaacggt
cattattgtattagagtAGGGGTAGCGCAATCATCACAATTTAGCAGTGA
ACTGTTAAACTAAGGATGGTTTGTcactactctgtaccagagtgtatctc
acgtttatcgcttcgtacagcttcgtagtacactttgtgcgcattgtctg
tttgataaaaaaattcccgtacggagacctctgcgatgaagtatgattta
taaatagcaacacttctctcatcgtctcccctctctcaccaacactccat
cgcagcggtcggttcgaaaaatctcaaatgagaaaagacaatgacaacag
accctctacggcaatgaattttgaaattagccgtaaatgctgggtctgtg
tacaggcAAGTTTGTCACGTGATCGTGGTAAAATGATATGAATTATGAAT
CTTACGGTTCGTAAATCTACATTTTCATTTTGGTGgagtcccagctggca
cacaacgttgtgaacattagataaacgttgaaacaacgttgtgtgccagc
tggagtCGTTGCAAAAGCGTGAGGGTTTGGTTGAAAAGGTTTTGACTATC
GTTTATAAAGCAGCCTTACCATTATTAAGCTCATGAAAAATAAGTTGGTG
GGATAAAAACATATAATAATTCGAATTTCGCAAAGTCAGTAAAAACATGA
AGTAAATTAGAGGGGCGCGAAAATTAAGGGAACTTAGGGTACACGCTTCC
CCATTtcaacatgaatatttttcacttttttaagaaaactcatCTTTAGA
TATTCTTAAGGCATCCAAGCTAACATACTTCAACAAAAGTATGGCATTTT
TCTGGAAGTCTTGGAGATAATTGACAATTTACGCGCAAAAAAAGGTCCCA
AAAGGGCCAATTTTAGGTTCAGGATTTTTTAATGGtgatattctttattt
tttttggccaATATCATCATATTCTTCTATTCCATAGAGTacattctcat
aaaaaagcactaaggcgaaaataaacaaatgtactgcttccggaaaccgg
ccgggtgataAAAAGATTGTTCTGAtccggccgcagactatggtttcatc
tatatggttcatcataaagattTTCTTGTTGACCGTGGACTGTTGAAGCT
ATCAAAtgtcgtttggttagatattcccgcttgtaaatcaagttttgttt
gttAGTAGTTgctacattagtattcagggcttacttcatatgtttgtaca
taaaagttatctttaaagtttttcaatttcaatgatcttaagttatcaaa
aatagcaacaacaaaaaattatttttccagcCGGCTACatgagttttttt
tcttcactggaaacactacatttttttattttcacctaattttgtttttc
tttatataaGCAGATCAACAAGAGAAAGAACAAGAGGATAGCGACGAAGA
AAAAAGCGATCAAGAAAGtgaaggagaagaagaaaacaACAAAGAACCAG
AAGAACCTCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGATA
CGTTTTCGCTATCCCNgaagaagaagaagaaaacaacAAAGAACCAGAAG
AACCTCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACTGATACGT
TTTCGCTATCCCATACTCTCTGAATGGCATTTGCTTAGACGTTAAAAAGA
AAGCTAAGGTTGTCCTTTTTGCTGTTGTTTCATTTCCTATGTTTGTTGGT
TGGCTTGTTAGGTGGTCActgaaaatatacaaaaacgAGAAGTTTCGTAA
GGCCATATTTCGAGTTCTTTTACAACAACTACTCGGCATCCAATTAGGTA
GTGATGAACGAAACTTatggttgttgttgttattaaaGGAACCGAGAAAG
TCTATTTTTCCCTTCTGCTGCGAAACTAGATTCACTCTCAATATGATGGT
GGTGATGGTATATTACTCCTCGAAGTTAGTGAAGTATAAAGGTTTCACAT
AGATCAGAGCAAATTCTGCATTACCGGAACTGAAAAGACGACATTTGGGA
ACTCGAAAATGTAATGCTAAACGTAATATAACGGATAGGAGTGAATCAAT
CTCTTTTGATACTGGAAAACTGTTTGGATAAAAACAACATTGAATATTAC
GAACTTCGTCAACGTATGTTGACTCTTAAACAATGAAAGTTGTCCTTGTA
AATAgttattttttagtatttattATTCCACGTCCATTTAAATTTTCCAG
TAGATTAACTGACCAAGTTTTccagaaagtaaaaaatataaccCAAtgat
ttacacgcttttttataagaacacaaggctgaaAAGTAGCCAAAACCTAT
GAACAAAtcaagaacaatctgagcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073203-exon-scaffold_88-1491911889:177175..177391 | TCONS_00073203-exon-scaffold_88-1491911889:177175..177391 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1510915933:177175..177391 | TCONS_00073203-exon-scaffold_88-1510915933:177175..177391 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1575043694:177175..177391 | TCONS_00073203-exon-scaffold_88-1575043694:177175..177391 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1491911889:178721..178806 | TCONS_00073203-exon-scaffold_88-1491911889:178721..178806 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1510915933:178721..178806 | TCONS_00073203-exon-scaffold_88-1510915933:178721..178806 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1575043694:178721..178806 | TCONS_00073203-exon-scaffold_88-1575043694:178721..178806 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1491911889:179232..179284 | TCONS_00073203-exon-scaffold_88-1491911889:179232..179284 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1510915933:179232..179284 | TCONS_00073203-exon-scaffold_88-1510915933:179232..179284 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1575043694:179232..179284 | TCONS_00073203-exon-scaffold_88-1575043694:179232..179284 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1491911889:180935..181899 | TCONS_00073203-exon-scaffold_88-1491911889:180935..181899 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1510915933:180935..181899 | TCONS_00073203-exon-scaffold_88-1510915933:180935..181899 | Clytia hemisphaerica | exon |
| TCONS_00073203-exon-scaffold_88-1575043694:180935..181899 | TCONS_00073203-exon-scaffold_88-1575043694:180935..181899 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_88 | supercontig | scaffold_88:177175..181899 + |
Blast
The following BLAST results are available for this feature:
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