XLOC_045408 (gene) - C. hemisphaerica

Overview
NameXLOC_045408
Unique NameXLOC_045408
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_88:177168..181899+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045408 ID=XLOC_045408|Name=XLOC_045408|organism=Clytia hemisphaerica|type=gene|length=4732bp|location=Sequence derived from alignment at scaffold_88:177168..181899+ (Clytia hemisphaerica)
GCTACAATATGAACCCTGAGATCCGCAACGAGGTGGAgttgaaaaaacaa cgaaggGAAGAACAACGGATTGACGAACTGAAGAAAGCAGGAAAGAGTAA AGAAGAAATCGAAGAAGCATTAAGCAAATACAAAggaaaagagaaagaga agaaagaagTCATTGTTTGTCATACCGTTCAAGATGAACAGAAACGGAAA TTGGACAGATTGATGAGTAACCCGGTAAGTACAGTGTGTCCTAAACCAGC GGATAAATTTTTATGTACAGTAAAATCGTCCTTATTTATGAAAACTTTTA TGACTTCTATACGCCTGTTTAGCAtgtattaccgagtttatgtatcagag gatatcgagggcgacggtaagtgaaatgatacaaaacaaagtcgataatT GATacacggctctatatcgcctgtGCTCACCTAAATagacgacggtatct tggtgtttttaccgtcgtcgagcaaagtggacggtgattttggagacatg tcaactttgctttataccgtccccctagatttatctcgaatacataaact cgctatagACTCTGTTGAGGAGCAATCTCTACTTCTCCGTTCACTGCAAG AACACTCTCTGGTGACAACAACAGTCTATGCTCACTTACCCAAGCCGCGC TGATTAGTTCTGGGAAGgacgaaacacgtgtctgcggatagatGACTTGT CTACTTGATATTTTAATCTCAAAAgcctattcaatcatcttgagAATTGA ATATAtattgattgaacagagaattGCAATTTTATTTACATCAAATTTGT AAAGCATCTGTTAGTCTATTATAAAAGTTTTACACTTACAAATATATCTA GGCTGAAAAAATGAAACCAAATCAAAACATCGTCAAAGCATTTGTCCACT CTCTGAAATTTCAAGAGAtttcatgacgtcataagtTAAAAATTTTATCC CAAATAAGTGAATTCCCAAATAACTTTGACTTGCACAATTATTATATAAC CTCTATGCTCACAATAGTTAGAAGATTTGAAAGCGCTAAGCGCTAAACGT TTTgaatcaatgataattttttttcaatttacagAATAAAGAAGTTTACA TTCCTCAGCAACGCAAAGAATGGAAACCTCGCGACCCGGCCGAGTTTGTG CGCCATGTTATGGGGTCTAGTGCTGGGGCTGGGAGTGGCGAATTTCACGT GTATCGAAACATAAGGAAGCGGGAATTAAAACGTCAAGAATACATGGAAA AGAAAACTATGAAGGTATGTTGAAAGGGGAGTACCGGCCTTCAATGCCAA TGGGAACATTCCATTGAAGTTGAcagtatatttttttttcacaaattaaa ttgACCCTGTGagacaaaatttattggcaTTGCAACCATGTCCAGTTATC GAATATTTCCGGACTTTCACACCTCGTATTGCCAGAGCGACTCCTTGTTG AGTAAAGGGCGATGAACTTTTTTCGTATTTTCCCGGACTGTCTCTTTTAA AAAAGAGGTCTAAAATCCTCACATTTTAATATAAAATATGCTTTTTTATT TAGGAAGAGCTAGATGAAGAATTTCAAGCGAAAATGGAGGCGAATAAAGA AAAGGCCGAAGATTCAACGAACAAAAAGCGAGCTAAAAGGTAACTACTCT ATCTCTTCCCAACGCTTCTTATTTTATGAGAATCTTACCCTTTTCATCTG GCTCTTGATAtacatgacgtaatcttttatacggaaacaccggAAAAACA CTgggcgtttgccaccagttttgaatttaaacaatgaaactggtggcaaa cgcccggtcttttcgtgtgtttccgtataaaagattacgtcatgaatatc aagaattcaACGCGACGTAAGTCAAATAGACCTAACGATATTCCCAAGta aattaaattatttaaaggaattttgagctgtgacatcgcattttattttt attttaacaaaaaagagCAAAGTCGAATTCAAATGAATTTACAATGGAAT ATTTTAGCCTGAAAATAGATGAAAGATGAAAATAGATCTTATTCATTTTG TTTTCCTTCTTCAGGCAAcgaagaaaacagaaaaaggcAATGGCAAAGAA ATCTAAGAAATCTGAAGGTATGAGTGGAAAATATATATCTGGATATTGTT TGATTTTTGGCTGAAAGCTGATAATTCTTAAGGTGTAAAATTAGCAATTA GAGCGCCTTTCAATGTTCACCAAAAACCAAACTTTTCGTTGTACCCTTTC TATATAATAGCAATCCCCCATATTGGTCAGCCCCCTTAAAAACGGGCCTA CTCTGCACGGAGTTGCCCGTCGTTCGTCGTTAAGAAAATTCAagtcgcaa gctcggtcgttgcTTGACCACGGGCAATACTTCTAAGTGCAGCCCTCGCA AaacggtcattattgtattagagtAGGGGTAGCGCAATCATCACAATTTA GCAGTGAACTGTTAAACTAAGGATGGTTTGTcactactctgtaccagagt gtatctcacgtttatcgcttcgtacagcttcgtagtacactttgtgcgca ttgtctgtttgataaaaaaattcccgtacggagacctctgcgatgaagta tgatttataaatagcaacacttctctcatcgtctcccctctctcaccaac actccatcgcagcggtcggttcgaaaaatctcaaatgagaaaagacaatg acaacagaccctctacggcaatgaattttgaaattagccgtaaatgctgg gtctgtgtacaggcAAGTTTGTCACGTGATCGTGGTAAAATGATATGAAT TATGAATCTTACGGTTCGTAAATCTACATTTTCATTTTGGTGgagtccca gctggcacacaacgttgtgaacattagataaacgttgaaacaacgttgtg tgccagctggagtCGTTGCAAAAGCGTGAGGGTTTGGTTGAAAAGGTTTT GACTATCGTTTATAAAGCAGCCTTACCATTATTAAGCTCATGAAAAATAA GTTGGTGGGATAAAAACATATAATAATTCGAATTTCGCAAAGTCAGTAAA AACATGAAGTAAATTAGAGGGGCGCGAAAATTAAGGGAACTTAGGGTACA CGCTTCCCCATTtcaacatgaatatttttcacttttttaagaaaactcat CTTTAGATATTCTTAAGGCATCCAAGCTAACATACTTCAACAAAAGTATG GCATTTTTCTGGAAGTCTTGGAGATAATTGACAATTTACGCGCAAAAAAA GGTCCCAAAAGGGCCAATTTTAGGTTCAGGATTTTTTAATGGtgatattc tttattttttttggccaATATCATCATATTCTTCTATTCCATAGAGTaca ttctcataaaaaagcactaaggcgaaaataaacaaatgtactgcttccgg aaaccggccgggtgataAAAAGATTGTTCTGAtccggccgcagactatgg tttcatctatatggttcatcataaagattTTCTTGTTGACCGTGGACTGT TGAAGCTATCAAAtgtcgtttggttagatattcccgcttgtaaatcaagt tttgtttgttAGTAGTTgctacattagtattcagggcttacttcatatgt ttgtacataaaagttatctttaaagtttttcaatttcaatgatcttaagt tatcaaaaatagcaacaacaaaaaattatttttccagcCGGCTACatgag ttttttttcttcactggaaacactacatttttttattttcacctaatttt gtttttctttatataaGCAGATCAACAAGAGAAAGAACAAGAGGATAGCG ACGAAGAAAAAAGCGATCAAGAAAGtgaaggagaagaagaaaacaACAAA GAACCAGAAGAACCTCATTTCATCATTGGTGGAAAATGAAACGGATCTTG ACTGATACGTTTTCGCTATCCCNgaagaagaagaagaaaacaacAAAGAA CCAGAAGAACCTCATTTCATCATTGGTGGAAAATGAAACGGATCTTGACT GATACGTTTTCGCTATCCCATACTCTCTGAATGGCATTTGCTTAGACGTT AAAAAGAAAGCTAAGGTTGTCCTTTTTGCTGTTGTTTCATTTCCTATGTT TGTTGGTTGGCTTGTTAGGTGGTCActgaaaatatacaaaaacgAGAAGT TTCGTAAGGCCATATTTCGAGTTCTTTTACAACAACTACTCGGCATCCAA TTAGGTAGTGATGAACGAAACTTatggttgttgttgttattaaaGGAACC GAGAAAGTCTATTTTTCCCTTCTGCTGCGAAACTAGATTCACTCTCAATA TGATGGTGGTGATGGTATATTACTCCTCGAAGTTAGTGAAGTATAAAGGT TTCACATAGATCAGAGCAAATTCTGCATTACCGGAACTGAAAAGACGACA TTTGGGAACTCGAAAATGTAATGCTAAACGTAATATAACGGATAGGAGTG AATCAATCTCTTTTGATACTGGAAAACTGTTTGGATAAAAACAACATTGA ATATTACGAACTTCGTCAACGTATGTTGACTCTTAAACAATGAAAGTTGT CCTTGTAAATAgttattttttagtatttattATTCCACGTCCATTTAAAT TTTCCAGTAGATTAACTGACCAAGTTTTccagaaagtaaaaaatataacc CAAtgatttacacgcttttttataagaacacaaggctgaaAAGTAGCCAA AACCTATGAACAAAtcaagaacaatctgagcc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00073201TCONS_00073201Clytia hemisphaericatranscript
TCONS_00073202TCONS_00073202Clytia hemisphaericatranscript
TCONS_00073203TCONS_00073203Clytia hemisphaericatranscript
TCONS_00073204TCONS_00073204Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00073201-proteinTCONS_00073201-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:177168..181899 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
PRKRIP1PRKR-interacting protein 1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.34 12.18 9.34 7.29 7.04 6.6 9.77 10.49 11.94 8.36 8.16 9.28 7.92 9.26 9.61 10.5 13.79 14.41 4.77 4.22 7.31 8.31 10.69 9.82 14.09 15.51 5.53 3.83 5.53 6.89