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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073175 ID=TCONS_00073175|Name=TCONS_00073175|organism=Clytia hemisphaerica|type=transcript|length=1011bp
CATCTGGTCTCTGTGGCTTTGTCAGAACATGAACAAACGGCTGGACATCC
TTCTCCTTCGTAAGCACTGCTAGCTTCGTTGCCGCCTCGTTAAAACATAA
AATGAAACAATAGGTTTCGATGATCTACCTTGGGAATACCTTGCTAACaa
cgtcaaaacttcgacaaaagtctctgttgttctactctccTCCAGTCTta
tatctatatcataacaaagataacagatgcgaaatcatcatcatttttca
aaactccgATGAAATAATATTgattactttaagggcagaaactttcgcgg
gtagaaactttcgcgttttttgcgtttttggcagtttctgccaggtaaga
aattaaacaagaaattcgcgTTATaagttaatttcgcgaaaaatgaaact
tctcctaaaaatcgcgaaagttttttccaagttttaaaagccgaaaaatc
taaataaaacgAGGACTCAGGGAAAGGCCGGGAGAGGGTAAGAATAATTT
CGTCCTAGCTATAAGGGGATGTAGATTCTCAAGACAGTTAATAAAAGACA
GGATTGTTAAAAATGCTTCGATAgcttattttttgtattttctataaTGA
TTTACTCGATAGTGATACAATTCCCTTGCTCTTTTGCCTTCTTTTTACCA
CCTGAGGACATTTCACGAATATCTCTGCTTCCATTTCCAGCTTCTTCATT
CgacttttcttccttttcttttgcTCGAATGGGGTGGTGGATAGCGGTAA
CGTCATCACGAAATGNATCTCTGCTTCCATTTACAGCTTCTTCATTCgac
ttttcttccttttcttttccTCGAATGGGGTGGTGGATAGCGGTAACGTC
ATCACGaaatgagatttgaaataatattttattcaCTTTCCCTAGCCATT
CGCGAAAGGTATTGCTaataaaattgaacattcacaaaaaactgcgaaag
tttcttccgtaaattttcttcaaaaagtaaaaatcgcgaaacttaaatcc
gcgaaatttcg Run BLAST on NCBI protein sequence of TCONS_00073175-protein >TCONS_00073175-protein ID=TCONS_00073175-protein|Name=TCONS_00073175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MFNFISNTFREWLGKVNKILFQISFRDDVTAIHHPIRGKEKEEKSNEEAV
NGSRDXFRDDVTAIHHPIRAKEKEEKSNEEAGNGSRDIREMSSGGKKKAK
EQGNCITIE Run BLAST on NCBI transcript from alignment at scaffold_87:38261..39271 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073175 ID=TCONS_00073175|Name=TCONS_00073175|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at scaffold_87:38261..39271 (Clytia hemisphaerica)
cgaaatttcgcggatttaagtttcgcgatttttactttttgaagaaaatt
tacggaagaaactttcgcagttttttgtgaatgttcaattttattAGCAA
TACCTTTCGCGAATGGCTAGGGAAAGtgaataaaatattatttcaaatct
catttCGTGATGACGTTACCGCTATCCACCACCCCATTCGAggaaaagaa
aaggaagaaaagtcGAATGAAGAAGCTGTAAATGGAAGCAGAGATNCATT
TCGTGATGACGTTACCGCTATCCACCACCCCATTCGAgcaaaagaaaagg
aagaaaagtcGAATGAAGAAGCTGGAAATGGAAGCAGAGATATTCGTGAA
ATGTCCTCAGGTGGTAAAAAGAAGGCAAAAGAGCAAGGGAATTGTATCAC
TATCGAGTAAATCAttatagaaaatacaaaaaataagcTATCGAAGCATT
TTTAACAATCCTGTCTTTTATTAACTGTCTTGAGAATCTACATCCCCTTA
TAGCTAGGACGAAATTATTCTTACCCTCTCCCGGCCTTTCCCTGAGTCCT
cgttttatttagatttttcggcttttaaaacttggaaaaaactttcgcga
tttttaggagaagtttcatttttcgcgaaattaacttATAAcgcgaattt
cttgtttaatttcttacctggcagaaactgccaaaaacgcaaaaaacgcg
aaagtttctacccgcgaaagtttctgcccttaaagtaatcAATATTATTT
CATcggagttttgaaaaatgatgatgatttcgcatctgttatctttgtta
tgatatagatataAGACTGGAggagagtagaacaacagagacttttgtcg
aagttttgacgttGTTAGCAAGGTATTCCCAAGGTAGATCATCGAAACCT
ATTGTTTCATTTTATGTTTTAACGAGGCGGCAACGAAGCTAGCAGTGCTT
ACGAAGGAGAAGGATGTCCAGCCGTTTGTTCATGTTCTGACAAAGCCACA
GAGACCAGATG Coding sequence (CDS) from alignment at scaffold_87:38261..39271 >TCONS_00073175 ID=TCONS_00073175|Name=TCONS_00073175|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_87:38261..39271 (Clytia hemisphaerica)
atgttcaattttattAGCAATACCTTTCGCGAATGGCTAGGGAAAGtgaa
taaaatattatttcaaatctcatttCGTGATGACGTTACCGCTATCCACC
ACCCCATTCGAggaaaagaaaaggaagaaaagtcGAATGAAGAAGCTGTA
AATGGAAGCAGAGATNCATTTCGTGATGACGTTACCGCTATCCACCACCC
CATTCGAgcaaaagaaaaggaagaaaagtcGAATGAAGAAGCTGGAAATG
GAAGCAGAGATATTCGTGAAATGTCCTCAGGTGGTAAAAAGAAGGCAAAA
GAGCAAGGGAATTGTATCACTATCGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073175-exon-scaffold_87-1491911889:38261..39271 | TCONS_00073175-exon-scaffold_87-1491911889:38261..39271 | Clytia hemisphaerica | exon |
| TCONS_00073175-exon-scaffold_87-1510915933:38261..39271 | TCONS_00073175-exon-scaffold_87-1510915933:38261..39271 | Clytia hemisphaerica | exon |
| TCONS_00073175-exon-scaffold_87-1575043694:38261..39271 | TCONS_00073175-exon-scaffold_87-1575043694:38261..39271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:38261..39271 . |
Blast
The following BLAST results are available for this feature:
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