TCONS_00073175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073175
Unique NameTCONS_00073175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1011

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073175 ID=TCONS_00073175|Name=TCONS_00073175|organism=Clytia hemisphaerica|type=transcript|length=1011bp
CATCTGGTCTCTGTGGCTTTGTCAGAACATGAACAAACGGCTGGACATCC
TTCTCCTTCGTAAGCACTGCTAGCTTCGTTGCCGCCTCGTTAAAACATAA
AATGAAACAATAGGTTTCGATGATCTACCTTGGGAATACCTTGCTAACaa
cgtcaaaacttcgacaaaagtctctgttgttctactctccTCCAGTCTta
tatctatatcataacaaagataacagatgcgaaatcatcatcatttttca
aaactccgATGAAATAATATTgattactttaagggcagaaactttcgcgg
gtagaaactttcgcgttttttgcgtttttggcagtttctgccaggtaaga
aattaaacaagaaattcgcgTTATaagttaatttcgcgaaaaatgaaact
tctcctaaaaatcgcgaaagttttttccaagttttaaaagccgaaaaatc
taaataaaacgAGGACTCAGGGAAAGGCCGGGAGAGGGTAAGAATAATTT
CGTCCTAGCTATAAGGGGATGTAGATTCTCAAGACAGTTAATAAAAGACA
GGATTGTTAAAAATGCTTCGATAgcttattttttgtattttctataaTGA
TTTACTCGATAGTGATACAATTCCCTTGCTCTTTTGCCTTCTTTTTACCA
CCTGAGGACATTTCACGAATATCTCTGCTTCCATTTCCAGCTTCTTCATT
CgacttttcttccttttcttttgcTCGAATGGGGTGGTGGATAGCGGTAA
CGTCATCACGAAATGNATCTCTGCTTCCATTTACAGCTTCTTCATTCgac
ttttcttccttttcttttccTCGAATGGGGTGGTGGATAGCGGTAACGTC
ATCACGaaatgagatttgaaataatattttattcaCTTTCCCTAGCCATT
CGCGAAAGGTATTGCTaataaaattgaacattcacaaaaaactgcgaaag
tttcttccgtaaattttcttcaaaaagtaaaaatcgcgaaacttaaatcc
gcgaaatttcg
Run BLAST on NCBI

protein sequence of TCONS_00073175-protein

>TCONS_00073175-protein ID=TCONS_00073175-protein|Name=TCONS_00073175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MFNFISNTFREWLGKVNKILFQISFRDDVTAIHHPIRGKEKEEKSNEEAV
NGSRDXFRDDVTAIHHPIRAKEKEEKSNEEAGNGSRDIREMSSGGKKKAK
EQGNCITIE
Run BLAST on NCBI

transcript from alignment at scaffold_87:38261..39271

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073175 ID=TCONS_00073175|Name=TCONS_00073175|organism=Clytia hemisphaerica|type=transcript|length=1011bp|location=Sequence derived from alignment at scaffold_87:38261..39271 (Clytia hemisphaerica)
cgaaatttcgcggatttaagtttcgcgatttttactttttgaagaaaatt tacggaagaaactttcgcagttttttgtgaatgttcaattttattAGCAA TACCTTTCGCGAATGGCTAGGGAAAGtgaataaaatattatttcaaatct catttCGTGATGACGTTACCGCTATCCACCACCCCATTCGAggaaaagaa aaggaagaaaagtcGAATGAAGAAGCTGTAAATGGAAGCAGAGATNCATT TCGTGATGACGTTACCGCTATCCACCACCCCATTCGAgcaaaagaaaagg aagaaaagtcGAATGAAGAAGCTGGAAATGGAAGCAGAGATATTCGTGAA ATGTCCTCAGGTGGTAAAAAGAAGGCAAAAGAGCAAGGGAATTGTATCAC TATCGAGTAAATCAttatagaaaatacaaaaaataagcTATCGAAGCATT TTTAACAATCCTGTCTTTTATTAACTGTCTTGAGAATCTACATCCCCTTA TAGCTAGGACGAAATTATTCTTACCCTCTCCCGGCCTTTCCCTGAGTCCT cgttttatttagatttttcggcttttaaaacttggaaaaaactttcgcga tttttaggagaagtttcatttttcgcgaaattaacttATAAcgcgaattt cttgtttaatttcttacctggcagaaactgccaaaaacgcaaaaaacgcg aaagtttctacccgcgaaagtttctgcccttaaagtaatcAATATTATTT CATcggagttttgaaaaatgatgatgatttcgcatctgttatctttgtta tgatatagatataAGACTGGAggagagtagaacaacagagacttttgtcg aagttttgacgttGTTAGCAAGGTATTCCCAAGGTAGATCATCGAAACCT ATTGTTTCATTTTATGTTTTAACGAGGCGGCAACGAAGCTAGCAGTGCTT ACGAAGGAGAAGGATGTCCAGCCGTTTGTTCATGTTCTGACAAAGCCACA GAGACCAGATG

Coding sequence (CDS) from alignment at scaffold_87:38261..39271

>TCONS_00073175 ID=TCONS_00073175|Name=TCONS_00073175|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_87:38261..39271 (Clytia hemisphaerica)
atgttcaattttattAGCAATACCTTTCGCGAATGGCTAGGGAAAGtgaa
taaaatattatttcaaatctcatttCGTGATGACGTTACCGCTATCCACC
ACCCCATTCGAggaaaagaaaaggaagaaaagtcGAATGAAGAAGCTGTA
AATGGAAGCAGAGATNCATTTCGTGATGACGTTACCGCTATCCACCACCC
CATTCGAgcaaaagaaaaggaagaaaagtcGAATGAAGAAGCTGGAAATG
GAAGCAGAGATATTCGTGAAATGTCCTCAGGTGGTAAAAAGAAGGCAAAA
GAGCAAGGGAATTGTATCACTATCGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045387XLOC_045387Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073175-proteinTCONS_00073175-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073175-exon-scaffold_87-1491911889:38261..39271TCONS_00073175-exon-scaffold_87-1491911889:38261..39271Clytia hemisphaericaexon
TCONS_00073175-exon-scaffold_87-1510915933:38261..39271TCONS_00073175-exon-scaffold_87-1510915933:38261..39271Clytia hemisphaericaexon
TCONS_00073175-exon-scaffold_87-1575043694:38261..39271TCONS_00073175-exon-scaffold_87-1575043694:38261..39271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:38261..39271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.85076 1.57766 0.670681 1.22974 0.864922 0.593686 0.544829 0.566109 0.365833 0.249744 0.143397 0.438185 0.475475 0.58248 0.600553 0.379092 0.216067 0.319575 0.754745 0.111249 0.313453 0.291962 1.63223 1.86643 0.52029 0.787339 0.203381 0.891824 2.39623 2.17951
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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