TCONS_00073172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073172
Unique NameTCONS_00073172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length805

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073172 ID=TCONS_00073172|Name=TCONS_00073172|organism=Clytia hemisphaerica|type=transcript|length=805bp
TTTGCAATGCCATGAATTGCGTTCTTAGTCCAATTTGAATGAGAACTTGA
AGAGCACAATTCATCAACCTTATCATTCCAAAATGTTCTGTATGCTTTTT
GACTTGGATCACCCTCAATTTCGGATTCagaataaattttacatccctTA
ATCAAAGCGGAGCTCCATCGTGATTTTTCTAATGGTTTTACAaaagtttg
ttgttttttatttgaggagGTATCTTTTGTCAGCCAgttattcaagtttt
ttttcgattttttctgtGTTTGGTATTTTTCAGTTGAATTCCGTTTTCCG
AAGAAAGGATGGGTTGGCTCTGCTTCGGAATGATTCAAGTCGGCTCTTGG
TATTATGACGTTTTTGTTGTCCAATGAGTTTGGAGTATCGTAGAGATTCG
GAGTGTGCTGTGTTTTTATGGTCTCTGGGTTGATTTTCTTAATGGTTGGT
GTCTGTGGGCTGTCCTCAGTGGCTGGTGTCTGAAGGTTATTCTTAAAGGT
TGGTGTTTGAGAACTTTCCAGGAAAATCGACGTCGGTTGGCAATTTAAGG
GTTCGTTTGGGGATCCGAGAGAAAAAGTACTACTACGCTTTGTTTCAGCT
TCGGATGATTTGTAGTTTATACAGTATGACATTAAGTTCATTAGTTTGTA
GTTCGTTTCTTTTGCTATCATTTTGATGTGAAATCTTTCCTCCTGTCTTT
TTGATAATGGGATTCCATCAAACATAAGTAAAAAATCTAAAGGAACGTTC
TCTTCAATTTGATCAAGGATCTCGTACCTCAGAGCTTTGACTGGTTGGTC
CAAAA
Run BLAST on NCBI

protein sequence of TCONS_00073172-protein

>TCONS_00073172-protein ID=TCONS_00073172-protein|Name=TCONS_00073172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
LDQPVKALRYEILDQIEENVPLDFLLMFDGIPLSKRQEERFHIKMIAKET
NYKLMNLMSYCINYKSSEAETKRSSTFSLGSPNEPLNCQPTSIFLESSQT
PTFKNNLQTPATEDSPQTPTIKKINPETIKTQHTPNLYDTPNSLDNKNVI
IPRADLNHSEAEPTHPFFGKRNSTEKYQTQKKSKKNLNNWLTKDTSSNKK
QQTFVKPLEKSRWSSALIKGCKIYSESEIEGDPSQKAYRTFWNDKVDELC
SSSSHSNWTKNAIHGIA
Run BLAST on NCBI

transcript from alignment at scaffold_87:19590..20394

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073172 ID=TCONS_00073172|Name=TCONS_00073172|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at scaffold_87:19590..20394 (Clytia hemisphaerica)
TTTTGGACCAACCAGTCAAAGCTCTGAGGTACGAGATCCTTGATCAAATT GAAGAGAACGTTCCTTTAGATTTTTTACTTATGTTTGATGGAATCCCATT ATCAAAAAGACAGGAGGAAAGATTTCACATCAAAATGATAGCAAAAGAAA CGAACTACAAACTAATGAACTTAATGTCATACTGTATAAACTACAAATCA TCCGAAGCTGAAACAAAGCGTAGTAGTACTTTTTCTCTCGGATCCCCAAA CGAACCCTTAAATTGCCAACCGACGTCGATTTTCCTGGAAAGTTCTCAAA CACCAACCTTTAAGAATAACCTTCAGACACCAGCCACTGAGGACAGCCCA CAGACACCAACCATTAAGAAAATCAACCCAGAGACCATAAAAACACAGCA CACTCCGAATCTCTACGATACTCCAAACTCATTGGACAACAAAAACGTCA TAATACCAAGAGCCGACTTGAATCATTCCGAAGCAGAGCCAACCCATCCT TTCTTCGGAAAACGGAATTCAACTGAAAAATACCAAACacagaaaaaatc gaaaaaaaacttgaataacTGGCTGACAAAAGATACctcctcaaataaaa aacaacaaactttTGTAAAACCATTAGAAAAATCACGATGGAGCTCCGCT TTGATTAagggatgtaaaatttattctGAATCCGAAATTGAGGGTGATCC AAGTCAAAAAGCATACAGAACATTTTGGAATGATAAGGTTGATGAATTGT GCTCTTCAAGTTCTCATTCAAATTGGACTAAGAACGCAATTCATGGCATT GCAAA

Coding sequence (CDS) from alignment at scaffold_87:19590..20394

>TCONS_00073172 ID=TCONS_00073172|Name=TCONS_00073172|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_87:19590..20394 (Clytia hemisphaerica)
TTGGACCAACCAGTCAAAGCTCTGAGGTACGAGATCCTTGATCAAATTGA
AGAGAACGTTCCTTTAGATTTTTTACTTATGTTTGATGGAATCCCATTAT
CAAAAAGACAGGAGGAAAGATTTCACATCAAAATGATAGCAAAAGAAACG
AACTACAAACTAATGAACTTAATGTCATACTGTATAAACTACAAATCATC
CGAAGCTGAAACAAAGCGTAGTAGTACTTTTTCTCTCGGATCCCCAAACG
AACCCTTAAATTGCCAACCGACGTCGATTTTCCTGGAAAGTTCTCAAACA
CCAACCTTTAAGAATAACCTTCAGACACCAGCCACTGAGGACAGCCCACA
GACACCAACCATTAAGAAAATCAACCCAGAGACCATAAAAACACAGCACA
CTCCGAATCTCTACGATACTCCAAACTCATTGGACAACAAAAACGTCATA
ATACCAAGAGCCGACTTGAATCATTCCGAAGCAGAGCCAACCCATCCTTT
CTTCGGAAAACGGAATTCAACTGAAAAATACCAAACacagaaaaaatcga
aaaaaaacttgaataacTGGCTGACAAAAGATACctcctcaaataaaaaa
caacaaactttTGTAAAACCATTAGAAAAATCACGATGGAGCTCCGCTTT
GATTAagggatgtaaaatttattctGAATCCGAAATTGAGGGTGATCCAA
GTCAAAAAGCATACAGAACATTTTGGAATGATAAGGTTGATGAATTGTGC
TCTTCAAGTTCTCATTCAAATTGGACTAAGAACGCAATTCATGGCATTGC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045384XLOC_045384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073172-proteinTCONS_00073172-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073172-exon-scaffold_87-1491911889:19590..20394TCONS_00073172-exon-scaffold_87-1491911889:19590..20394Clytia hemisphaericaexon
TCONS_00073172-exon-scaffold_87-1510915933:19590..20394TCONS_00073172-exon-scaffold_87-1510915933:19590..20394Clytia hemisphaericaexon
TCONS_00073172-exon-scaffold_87-1575043694:19590..20394TCONS_00073172-exon-scaffold_87-1575043694:19590..20394Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_87supercontigscaffold_87:19590..20394 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.0765306 0 0 0 0 0 0.118767 0 0 0 0 0 0 0 0 0 0 0 0 0.171117 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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