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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073172 ID=TCONS_00073172|Name=TCONS_00073172|organism=Clytia hemisphaerica|type=transcript|length=805bp
TTTGCAATGCCATGAATTGCGTTCTTAGTCCAATTTGAATGAGAACTTGA
AGAGCACAATTCATCAACCTTATCATTCCAAAATGTTCTGTATGCTTTTT
GACTTGGATCACCCTCAATTTCGGATTCagaataaattttacatccctTA
ATCAAAGCGGAGCTCCATCGTGATTTTTCTAATGGTTTTACAaaagtttg
ttgttttttatttgaggagGTATCTTTTGTCAGCCAgttattcaagtttt
ttttcgattttttctgtGTTTGGTATTTTTCAGTTGAATTCCGTTTTCCG
AAGAAAGGATGGGTTGGCTCTGCTTCGGAATGATTCAAGTCGGCTCTTGG
TATTATGACGTTTTTGTTGTCCAATGAGTTTGGAGTATCGTAGAGATTCG
GAGTGTGCTGTGTTTTTATGGTCTCTGGGTTGATTTTCTTAATGGTTGGT
GTCTGTGGGCTGTCCTCAGTGGCTGGTGTCTGAAGGTTATTCTTAAAGGT
TGGTGTTTGAGAACTTTCCAGGAAAATCGACGTCGGTTGGCAATTTAAGG
GTTCGTTTGGGGATCCGAGAGAAAAAGTACTACTACGCTTTGTTTCAGCT
TCGGATGATTTGTAGTTTATACAGTATGACATTAAGTTCATTAGTTTGTA
GTTCGTTTCTTTTGCTATCATTTTGATGTGAAATCTTTCCTCCTGTCTTT
TTGATAATGGGATTCCATCAAACATAAGTAAAAAATCTAAAGGAACGTTC
TCTTCAATTTGATCAAGGATCTCGTACCTCAGAGCTTTGACTGGTTGGTC
CAAAA Run BLAST on NCBI protein sequence of TCONS_00073172-protein >TCONS_00073172-protein ID=TCONS_00073172-protein|Name=TCONS_00073172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
LDQPVKALRYEILDQIEENVPLDFLLMFDGIPLSKRQEERFHIKMIAKET
NYKLMNLMSYCINYKSSEAETKRSSTFSLGSPNEPLNCQPTSIFLESSQT
PTFKNNLQTPATEDSPQTPTIKKINPETIKTQHTPNLYDTPNSLDNKNVI
IPRADLNHSEAEPTHPFFGKRNSTEKYQTQKKSKKNLNNWLTKDTSSNKK
QQTFVKPLEKSRWSSALIKGCKIYSESEIEGDPSQKAYRTFWNDKVDELC
SSSSHSNWTKNAIHGIA Run BLAST on NCBI transcript from alignment at scaffold_87:19590..20394 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073172 ID=TCONS_00073172|Name=TCONS_00073172|organism=Clytia hemisphaerica|type=transcript|length=805bp|location=Sequence derived from alignment at scaffold_87:19590..20394 (Clytia hemisphaerica)
TTTTGGACCAACCAGTCAAAGCTCTGAGGTACGAGATCCTTGATCAAATT
GAAGAGAACGTTCCTTTAGATTTTTTACTTATGTTTGATGGAATCCCATT
ATCAAAAAGACAGGAGGAAAGATTTCACATCAAAATGATAGCAAAAGAAA
CGAACTACAAACTAATGAACTTAATGTCATACTGTATAAACTACAAATCA
TCCGAAGCTGAAACAAAGCGTAGTAGTACTTTTTCTCTCGGATCCCCAAA
CGAACCCTTAAATTGCCAACCGACGTCGATTTTCCTGGAAAGTTCTCAAA
CACCAACCTTTAAGAATAACCTTCAGACACCAGCCACTGAGGACAGCCCA
CAGACACCAACCATTAAGAAAATCAACCCAGAGACCATAAAAACACAGCA
CACTCCGAATCTCTACGATACTCCAAACTCATTGGACAACAAAAACGTCA
TAATACCAAGAGCCGACTTGAATCATTCCGAAGCAGAGCCAACCCATCCT
TTCTTCGGAAAACGGAATTCAACTGAAAAATACCAAACacagaaaaaatc
gaaaaaaaacttgaataacTGGCTGACAAAAGATACctcctcaaataaaa
aacaacaaactttTGTAAAACCATTAGAAAAATCACGATGGAGCTCCGCT
TTGATTAagggatgtaaaatttattctGAATCCGAAATTGAGGGTGATCC
AAGTCAAAAAGCATACAGAACATTTTGGAATGATAAGGTTGATGAATTGT
GCTCTTCAAGTTCTCATTCAAATTGGACTAAGAACGCAATTCATGGCATT
GCAAA Coding sequence (CDS) from alignment at scaffold_87:19590..20394 >TCONS_00073172 ID=TCONS_00073172|Name=TCONS_00073172|organism=Clytia hemisphaerica|type=CDS|length=801bp|location=Sequence derived from alignment at scaffold_87:19590..20394 (Clytia hemisphaerica)
TTGGACCAACCAGTCAAAGCTCTGAGGTACGAGATCCTTGATCAAATTGA
AGAGAACGTTCCTTTAGATTTTTTACTTATGTTTGATGGAATCCCATTAT
CAAAAAGACAGGAGGAAAGATTTCACATCAAAATGATAGCAAAAGAAACG
AACTACAAACTAATGAACTTAATGTCATACTGTATAAACTACAAATCATC
CGAAGCTGAAACAAAGCGTAGTAGTACTTTTTCTCTCGGATCCCCAAACG
AACCCTTAAATTGCCAACCGACGTCGATTTTCCTGGAAAGTTCTCAAACA
CCAACCTTTAAGAATAACCTTCAGACACCAGCCACTGAGGACAGCCCACA
GACACCAACCATTAAGAAAATCAACCCAGAGACCATAAAAACACAGCACA
CTCCGAATCTCTACGATACTCCAAACTCATTGGACAACAAAAACGTCATA
ATACCAAGAGCCGACTTGAATCATTCCGAAGCAGAGCCAACCCATCCTTT
CTTCGGAAAACGGAATTCAACTGAAAAATACCAAACacagaaaaaatcga
aaaaaaacttgaataacTGGCTGACAAAAGATACctcctcaaataaaaaa
caacaaactttTGTAAAACCATTAGAAAAATCACGATGGAGCTCCGCTTT
GATTAagggatgtaaaatttattctGAATCCGAAATTGAGGGTGATCCAA
GTCAAAAAGCATACAGAACATTTTGGAATGATAAGGTTGATGAATTGTGC
TCTTCAAGTTCTCATTCAAATTGGACTAAGAACGCAATTCATGGCATTGC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073172-exon-scaffold_87-1491911889:19590..20394 | TCONS_00073172-exon-scaffold_87-1491911889:19590..20394 | Clytia hemisphaerica | exon |
| TCONS_00073172-exon-scaffold_87-1510915933:19590..20394 | TCONS_00073172-exon-scaffold_87-1510915933:19590..20394 | Clytia hemisphaerica | exon |
| TCONS_00073172-exon-scaffold_87-1575043694:19590..20394 | TCONS_00073172-exon-scaffold_87-1575043694:19590..20394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_87 | supercontig | scaffold_87:19590..20394 . |
Blast
The following BLAST results are available for this feature:
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