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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073140 ID=TCONS_00073140|Name=TCONS_00073140|organism=Clytia hemisphaerica|type=transcript|length=1478bp
ACCCTGTTCtcttaaatctgataaaaacaagcaaagaaataACAAAGCCC
CTTGCGGgaagattaaaatatttttcggaAAACTGGGAGAAACTTACAAC
AGACCAGTGGATATTACAAACAATCAGGGGAATGACACTAGACCTAATAA
ATATTCCAAGGCAAAAAGTCTCTCCAAAAGACATAAACATGCCAAAAGAA
CAGAGAGAACTTGTAGACCTGGAGATAACAGAACTTTTGAGAAAGGGAGC
AATTTACCCTGTAAAAGCAGAGACAGGCCAATTCGTGAGCACAATCTTTC
TAAGGGAAAAGAAAAACGGGAAACAAAGACCAATAATAAATCTAAAGAAT
CTAAACTCCTACATTGTgtacgaaaaattcaaaatggagggGTTAAAACA
AATGACAGAGATGTTAAAAAAGGGAGATTTAATGGTGAAGTTGGACATGA
AAGATGCCTACTTCAACCTTCCAATCCGCTCAGATTATCGGAAATTTGTG
AGGTTTACCTGGAAAGGTTGCCTGTACGAGTTTGCCTGTCTCTGCTTCGG
ACTTGCACCAGGCCCaagaatatttacaaaaattttgaaagtccCTGTTC
AGTTTCTACGCAGGCTGAACATCCGGCTAGTAATTTACTTAGACGACATA
CTGGTCATGGGGGAAAACCTAGAAACCGTACTCCAGGCCAGGGATACGAT
CATTTACCTCCTTCAAAACTTGGGGTTTGTAATAAATCAGGAGAAATCAG
TGATGGAACCTACAGTGGAAATAGAATTTTTGGGAATGTTAATAAATTCA
GAGGAAATGACTATCTCCTTACCAGAGGAAAAAATAGAGAACATAGTGGG
ACTCTGCCAAAAAGTTTTGCAGTCAAAGGAAATAACCCTCAGGGAACTTT
CGAAACTGATAGGAAAATTGACTTCCACTTATGCGGCAGTTCTCCCTGCC
CCATTGAATTGCAAATTCTTGCAAATGAACCTAATAAAGGGCTTAAAAAA
TCAACTGAGCTACGAGACAACAGTCAAGTTAGATCGGCAAGGGAAATTGG
AATTAGATTGGTGGATAGAGAACCTAAAACTCCAGAAcgggagaaaaatc
aatttGGGCCCACCAGACCTAATAATTCAATCGGACGCGGCCAAAACAGG
GGGATGGGGAGCCCATTGCCAGGGAAAAAAGACAGGGGGCCAATGGAACC
AATGGGAAAACCAGCAACACATAAACATTCAAGAAACGATAGCAGCAGAA
CTTGCAATAAGGACttttacaaaattgaaaaagccCAAAAGACTGCACCT
TCAGATAGACAACACAGTAGCCTTGAGTTGTATATTGAAGATGGGCAGCA
CCAAAAACGAGATTCTGACCCAGTATGCGAAAAGGATTTGGGATTACCTT
CTAAAACACCAGATCATGATTACTGTGGAGTACCTCCCAAGTCGCCTGAA
CAAAGAGGCGGACAGGGAATCCAGACGG Run BLAST on NCBI protein sequence of TCONS_00073140-protein >TCONS_00073140-protein ID=TCONS_00073140-protein|Name=TCONS_00073140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
PVLLNLIKTSKEITKPLAGRLKYFSENWEKLTTDQWILQTIRGMTLDLIN
IPRQKVSPKDINMPKEQRELVDLEITELLRKGAIYPVKAETGQFVSTIFL
REKKNGKQRPIINLKNLNSYIVYEKFKMEGLKQMTEMLKKGDLMVKLDMK
DAYFNLPIRSDYRKFVRFTWKGCLYEFACLCFGLAPGPRIFTKILKVPVQ
FLRRLNIRLVIYLDDILVMGENLETVLQARDTIIYLLQNLGFVINQEKSV
MEPTVEIEFLGMLINSEEMTISLPEEKIENIVGLCQKVLQSKEITLRELS
KLIGKLTSTYAAVLPAPLNCKFLQMNLIKGLKNQLSYETTVKLDRQGKLE
LDWWIENLKLQNGRKINLGPPDLIIQSDAAKTGGWGAHCQGKKTGGQWNQ
WENQQHINIQETIAAELAIRTFTKLKKPKRLHLQIDNTVALSCILKMGST
KNEILTQYAKRIWDYLLKHQIMITVEYLPSRLNKEADRESRR Run BLAST on NCBI transcript from alignment at scaffold_86:1013616..1015093 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073140 ID=TCONS_00073140|Name=TCONS_00073140|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at scaffold_86:1013616..1015093 (Clytia hemisphaerica)
CCGTCTGGATTCCCTGTCCGCCTCTTTGTTCAGGCGACTTGGGAGGTACT
CCACAGTAATCATGATCTGGTGTTTTAGAAGGTAATCCCAAATCCTTTTC
GCATACTGGGTCAGAATCTCGTTTTTGGTGCTGCCCATCTTCAATATACA
ACTCAAGGCTACTGTGTTGTCTATCTGAAGGTGCAGTCTTTTGggctttt
tcaattttgtaaaaGTCCTTATTGCAAGTTCTGCTGCTATCGTTTCTTGA
ATGTTTATGTGTTGCTGGTTTTCCCATTGGTTCCATTGGCCCCCTGTCTT
TTTTCCCTGGCAATGGGCTCCCCATCCCCCTGTTTTGGCCGCGTCCGATT
GAATTATTAGGTCTGGTGGGCCCaaattgatttttctcccgTTCTGGAGT
TTTAGGTTCTCTATCCACCAATCTAATTCCAATTTCCCTTGCCGATCTAA
CTTGACTGTTGTCTCGTAGCTCAGTTGATTTTTTAAGCCCTTTATTAGGT
TCATTTGCAAGAATTTGCAATTCAATGGGGCAGGGAGAACTGCCGCATAA
GTGGAAGTCAATTTTCCTATCAGTTTCGAAAGTTCCCTGAGGGTTATTTC
CTTTGACTGCAAAACTTTTTGGCAGAGTCCCACTATGTTCTCTATTTTTT
CCTCTGGTAAGGAGATAGTCATTTCCTCTGAATTTATTAACATTCCCAAA
AATTCTATTTCCACTGTAGGTTCCATCACTGATTTCTCCTGATTTATTAC
AAACCCCAAGTTTTGAAGGAGGTAAATGATCGTATCCCTGGCCTGGAGTA
CGGTTTCTAGGTTTTCCCCCATGACCAGTATGTCGTCTAAGTAAATTACT
AGCCGGATGTTCAGCCTGCGTAGAAACTGAACAGggactttcaaaatttt
tgtaaatattcttGGGCCTGGTGCAAGTCCGAAGCAGAGACAGGCAAACT
CGTACAGGCAACCTTTCCAGGTAAACCTCACAAATTTCCGATAATCTGAG
CGGATTGGAAGGTTGAAGTAGGCATCTTTCATGTCCAACTTCACCATTAA
ATCTCCCTTTTTTAACATCTCTGTCATTTGTTTTAACccctccattttga
atttttcgtacACAATGTAGGAGTTTAGATTCTTTAGATTTATTATTGGT
CTTTGTTTCCCGTTTTTCTTTTCCCTTAGAAAGATTGTGCTCACGAATTG
GCCTGTCTCTGCTTTTACAGGGTAAATTGCTCCCTTTCTCAAAAGTTCTG
TTATCTCCAGGTCTACAAGTTCTCTCTGTTCTTTTGGCATGTTTATGTCT
TTTGGAGAGACTTTTTGCCTTGGAATATTTATTAGGTCTAGTGTCATTCC
CCTGATTGTTTGTAATATCCACTGGTCTGTTGTAAGTTTCTCCCAGTTTt
ccgaaaaatattttaatcttcCCGCAAGGGGCTTTGTtatttctttgctt
gtttttatcagatttaagaGAACAGGGT Coding sequence (CDS) from alignment at scaffold_86:1013616..1015093 >TCONS_00073140 ID=TCONS_00073140|Name=TCONS_00073140|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_86:1013616..1015093 (Clytia hemisphaerica)
CCGTCTGGATTCCCTGTCCGCCTCTTTGTTCAGGCGACTTGGGAGGTACT
CCACAGTAATCATGATCTGGTGTTTTAGAAGGTAATCCCAAATCCTTTTC
GCATACTGGGTCAGAATCTCGTTTTTGGTGCTGCCCATCTTCAATATACA
ACTCAAGGCTACTGTGTTGTCTATCTGAAGGTGCAGTCTTTTGggctttt
tcaattttgtaaaaGTCCTTATTGCAAGTTCTGCTGCTATCGTTTCTTGA
ATGTTTATGTGTTGCTGGTTTTCCCATTGGTTCCATTGGCCCCCTGTCTT
TTTTCCCTGGCAATGGGCTCCCCATCCCCCTGTTTTGGCCGCGTCCGATT
GAATTATTAGGTCTGGTGGGCCCaaattgatttttctcccgTTCTGGAGT
TTTAGGTTCTCTATCCACCAATCTAATTCCAATTTCCCTTGCCGATCTAA
CTTGACTGTTGTCTCGTAGCTCAGTTGATTTTTTAAGCCCTTTATTAGGT
TCATTTGCAAGAATTTGCAATTCAATGGGGCAGGGAGAACTGCCGCATAA
GTGGAAGTCAATTTTCCTATCAGTTTCGAAAGTTCCCTGAGGGTTATTTC
CTTTGACTGCAAAACTTTTTGGCAGAGTCCCACTATGTTCTCTATTTTTT
CCTCTGGTAAGGAGATAGTCATTTCCTCTGAATTTATTAACATTCCCAAA
AATTCTATTTCCACTGTAGGTTCCATCACTGATTTCTCCTGATTTATTAC
AAACCCCAAGTTTTGAAGGAGGTAAATGATCGTATCCCTGGCCTGGAGTA
CGGTTTCTAGGTTTTCCCCCATGACCAGTATGTCGTCTAAGTAAATTACT
AGCCGGATGTTCAGCCTGCGTAGAAACTGAACAGggactttcaaaatttt
tgtaaatattcttGGGCCTGGTGCAAGTCCGAAGCAGAGACAGGCAAACT
CGTACAGGCAACCTTTCCAGGTAAACCTCACAAATTTCCGATAATCTGAG
CGGATTGGAAGGTTGAAGTAGGCATCTTTCATGTCCAACTTCACCATTAA
ATCTCCCTTTTTTAACATCTCTGTCATTTGTTTTAACccctccattttga
atttttcgtacACAATGTAGGAGTTTAGATTCTTTAGATTTATTATTGGT
CTTTGTTTCCCGTTTTTCTTTTCCCTTAGAAAGATTGTGCTCACGAATTG
GCCTGTCTCTGCTTTTACAGGGTAAATTGCTCCCTTTCTCAAAAGTTCTG
TTATCTCCAGGTCTACAAGTTCTCTCTGTTCTTTTGGCATGTTTATGTCT
TTTGGAGAGACTTTTTGCCTTGGAATATTTATTAGGTCTAGTGTCATTCC
CCTGATTGTTTGTAATATCCACTGGTCTGTTGTAAGTTTCTCCCAGTTTt
ccgaaaaatattttaatcttcCCGCAAGGGGCTTTGTtatttctttgctt
gtttttatcagatttaagaGAACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073140-exon-scaffold_86-1491911889:1013616..1015093 | TCONS_00073140-exon-scaffold_86-1491911889:1013616..1015093 | Clytia hemisphaerica | exon |
| TCONS_00073140-exon-scaffold_86-1510915933:1013616..1015093 | TCONS_00073140-exon-scaffold_86-1510915933:1013616..1015093 | Clytia hemisphaerica | exon |
| TCONS_00073140-exon-scaffold_86-1575043694:1013616..1015093 | TCONS_00073140-exon-scaffold_86-1575043694:1013616..1015093 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1013616..1015093 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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