TCONS_00073140 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073140
Unique NameTCONS_00073140
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073140 ID=TCONS_00073140|Name=TCONS_00073140|organism=Clytia hemisphaerica|type=transcript|length=1478bp
ACCCTGTTCtcttaaatctgataaaaacaagcaaagaaataACAAAGCCC
CTTGCGGgaagattaaaatatttttcggaAAACTGGGAGAAACTTACAAC
AGACCAGTGGATATTACAAACAATCAGGGGAATGACACTAGACCTAATAA
ATATTCCAAGGCAAAAAGTCTCTCCAAAAGACATAAACATGCCAAAAGAA
CAGAGAGAACTTGTAGACCTGGAGATAACAGAACTTTTGAGAAAGGGAGC
AATTTACCCTGTAAAAGCAGAGACAGGCCAATTCGTGAGCACAATCTTTC
TAAGGGAAAAGAAAAACGGGAAACAAAGACCAATAATAAATCTAAAGAAT
CTAAACTCCTACATTGTgtacgaaaaattcaaaatggagggGTTAAAACA
AATGACAGAGATGTTAAAAAAGGGAGATTTAATGGTGAAGTTGGACATGA
AAGATGCCTACTTCAACCTTCCAATCCGCTCAGATTATCGGAAATTTGTG
AGGTTTACCTGGAAAGGTTGCCTGTACGAGTTTGCCTGTCTCTGCTTCGG
ACTTGCACCAGGCCCaagaatatttacaaaaattttgaaagtccCTGTTC
AGTTTCTACGCAGGCTGAACATCCGGCTAGTAATTTACTTAGACGACATA
CTGGTCATGGGGGAAAACCTAGAAACCGTACTCCAGGCCAGGGATACGAT
CATTTACCTCCTTCAAAACTTGGGGTTTGTAATAAATCAGGAGAAATCAG
TGATGGAACCTACAGTGGAAATAGAATTTTTGGGAATGTTAATAAATTCA
GAGGAAATGACTATCTCCTTACCAGAGGAAAAAATAGAGAACATAGTGGG
ACTCTGCCAAAAAGTTTTGCAGTCAAAGGAAATAACCCTCAGGGAACTTT
CGAAACTGATAGGAAAATTGACTTCCACTTATGCGGCAGTTCTCCCTGCC
CCATTGAATTGCAAATTCTTGCAAATGAACCTAATAAAGGGCTTAAAAAA
TCAACTGAGCTACGAGACAACAGTCAAGTTAGATCGGCAAGGGAAATTGG
AATTAGATTGGTGGATAGAGAACCTAAAACTCCAGAAcgggagaaaaatc
aatttGGGCCCACCAGACCTAATAATTCAATCGGACGCGGCCAAAACAGG
GGGATGGGGAGCCCATTGCCAGGGAAAAAAGACAGGGGGCCAATGGAACC
AATGGGAAAACCAGCAACACATAAACATTCAAGAAACGATAGCAGCAGAA
CTTGCAATAAGGACttttacaaaattgaaaaagccCAAAAGACTGCACCT
TCAGATAGACAACACAGTAGCCTTGAGTTGTATATTGAAGATGGGCAGCA
CCAAAAACGAGATTCTGACCCAGTATGCGAAAAGGATTTGGGATTACCTT
CTAAAACACCAGATCATGATTACTGTGGAGTACCTCCCAAGTCGCCTGAA
CAAAGAGGCGGACAGGGAATCCAGACGG
Run BLAST on NCBI

protein sequence of TCONS_00073140-protein

>TCONS_00073140-protein ID=TCONS_00073140-protein|Name=TCONS_00073140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
PVLLNLIKTSKEITKPLAGRLKYFSENWEKLTTDQWILQTIRGMTLDLIN
IPRQKVSPKDINMPKEQRELVDLEITELLRKGAIYPVKAETGQFVSTIFL
REKKNGKQRPIINLKNLNSYIVYEKFKMEGLKQMTEMLKKGDLMVKLDMK
DAYFNLPIRSDYRKFVRFTWKGCLYEFACLCFGLAPGPRIFTKILKVPVQ
FLRRLNIRLVIYLDDILVMGENLETVLQARDTIIYLLQNLGFVINQEKSV
MEPTVEIEFLGMLINSEEMTISLPEEKIENIVGLCQKVLQSKEITLRELS
KLIGKLTSTYAAVLPAPLNCKFLQMNLIKGLKNQLSYETTVKLDRQGKLE
LDWWIENLKLQNGRKINLGPPDLIIQSDAAKTGGWGAHCQGKKTGGQWNQ
WENQQHINIQETIAAELAIRTFTKLKKPKRLHLQIDNTVALSCILKMGST
KNEILTQYAKRIWDYLLKHQIMITVEYLPSRLNKEADRESRR
Run BLAST on NCBI

transcript from alignment at scaffold_86:1013616..1015093

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073140 ID=TCONS_00073140|Name=TCONS_00073140|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at scaffold_86:1013616..1015093 (Clytia hemisphaerica)
CCGTCTGGATTCCCTGTCCGCCTCTTTGTTCAGGCGACTTGGGAGGTACT CCACAGTAATCATGATCTGGTGTTTTAGAAGGTAATCCCAAATCCTTTTC GCATACTGGGTCAGAATCTCGTTTTTGGTGCTGCCCATCTTCAATATACA ACTCAAGGCTACTGTGTTGTCTATCTGAAGGTGCAGTCTTTTGggctttt tcaattttgtaaaaGTCCTTATTGCAAGTTCTGCTGCTATCGTTTCTTGA ATGTTTATGTGTTGCTGGTTTTCCCATTGGTTCCATTGGCCCCCTGTCTT TTTTCCCTGGCAATGGGCTCCCCATCCCCCTGTTTTGGCCGCGTCCGATT GAATTATTAGGTCTGGTGGGCCCaaattgatttttctcccgTTCTGGAGT TTTAGGTTCTCTATCCACCAATCTAATTCCAATTTCCCTTGCCGATCTAA CTTGACTGTTGTCTCGTAGCTCAGTTGATTTTTTAAGCCCTTTATTAGGT TCATTTGCAAGAATTTGCAATTCAATGGGGCAGGGAGAACTGCCGCATAA GTGGAAGTCAATTTTCCTATCAGTTTCGAAAGTTCCCTGAGGGTTATTTC CTTTGACTGCAAAACTTTTTGGCAGAGTCCCACTATGTTCTCTATTTTTT CCTCTGGTAAGGAGATAGTCATTTCCTCTGAATTTATTAACATTCCCAAA AATTCTATTTCCACTGTAGGTTCCATCACTGATTTCTCCTGATTTATTAC AAACCCCAAGTTTTGAAGGAGGTAAATGATCGTATCCCTGGCCTGGAGTA CGGTTTCTAGGTTTTCCCCCATGACCAGTATGTCGTCTAAGTAAATTACT AGCCGGATGTTCAGCCTGCGTAGAAACTGAACAGggactttcaaaatttt tgtaaatattcttGGGCCTGGTGCAAGTCCGAAGCAGAGACAGGCAAACT CGTACAGGCAACCTTTCCAGGTAAACCTCACAAATTTCCGATAATCTGAG CGGATTGGAAGGTTGAAGTAGGCATCTTTCATGTCCAACTTCACCATTAA ATCTCCCTTTTTTAACATCTCTGTCATTTGTTTTAACccctccattttga atttttcgtacACAATGTAGGAGTTTAGATTCTTTAGATTTATTATTGGT CTTTGTTTCCCGTTTTTCTTTTCCCTTAGAAAGATTGTGCTCACGAATTG GCCTGTCTCTGCTTTTACAGGGTAAATTGCTCCCTTTCTCAAAAGTTCTG TTATCTCCAGGTCTACAAGTTCTCTCTGTTCTTTTGGCATGTTTATGTCT TTTGGAGAGACTTTTTGCCTTGGAATATTTATTAGGTCTAGTGTCATTCC CCTGATTGTTTGTAATATCCACTGGTCTGTTGTAAGTTTCTCCCAGTTTt ccgaaaaatattttaatcttcCCGCAAGGGGCTTTGTtatttctttgctt gtttttatcagatttaagaGAACAGGGT

Coding sequence (CDS) from alignment at scaffold_86:1013616..1015093

>TCONS_00073140 ID=TCONS_00073140|Name=TCONS_00073140|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_86:1013616..1015093 (Clytia hemisphaerica)
CCGTCTGGATTCCCTGTCCGCCTCTTTGTTCAGGCGACTTGGGAGGTACT
CCACAGTAATCATGATCTGGTGTTTTAGAAGGTAATCCCAAATCCTTTTC
GCATACTGGGTCAGAATCTCGTTTTTGGTGCTGCCCATCTTCAATATACA
ACTCAAGGCTACTGTGTTGTCTATCTGAAGGTGCAGTCTTTTGggctttt
tcaattttgtaaaaGTCCTTATTGCAAGTTCTGCTGCTATCGTTTCTTGA
ATGTTTATGTGTTGCTGGTTTTCCCATTGGTTCCATTGGCCCCCTGTCTT
TTTTCCCTGGCAATGGGCTCCCCATCCCCCTGTTTTGGCCGCGTCCGATT
GAATTATTAGGTCTGGTGGGCCCaaattgatttttctcccgTTCTGGAGT
TTTAGGTTCTCTATCCACCAATCTAATTCCAATTTCCCTTGCCGATCTAA
CTTGACTGTTGTCTCGTAGCTCAGTTGATTTTTTAAGCCCTTTATTAGGT
TCATTTGCAAGAATTTGCAATTCAATGGGGCAGGGAGAACTGCCGCATAA
GTGGAAGTCAATTTTCCTATCAGTTTCGAAAGTTCCCTGAGGGTTATTTC
CTTTGACTGCAAAACTTTTTGGCAGAGTCCCACTATGTTCTCTATTTTTT
CCTCTGGTAAGGAGATAGTCATTTCCTCTGAATTTATTAACATTCCCAAA
AATTCTATTTCCACTGTAGGTTCCATCACTGATTTCTCCTGATTTATTAC
AAACCCCAAGTTTTGAAGGAGGTAAATGATCGTATCCCTGGCCTGGAGTA
CGGTTTCTAGGTTTTCCCCCATGACCAGTATGTCGTCTAAGTAAATTACT
AGCCGGATGTTCAGCCTGCGTAGAAACTGAACAGggactttcaaaatttt
tgtaaatattcttGGGCCTGGTGCAAGTCCGAAGCAGAGACAGGCAAACT
CGTACAGGCAACCTTTCCAGGTAAACCTCACAAATTTCCGATAATCTGAG
CGGATTGGAAGGTTGAAGTAGGCATCTTTCATGTCCAACTTCACCATTAA
ATCTCCCTTTTTTAACATCTCTGTCATTTGTTTTAACccctccattttga
atttttcgtacACAATGTAGGAGTTTAGATTCTTTAGATTTATTATTGGT
CTTTGTTTCCCGTTTTTCTTTTCCCTTAGAAAGATTGTGCTCACGAATTG
GCCTGTCTCTGCTTTTACAGGGTAAATTGCTCCCTTTCTCAAAAGTTCTG
TTATCTCCAGGTCTACAAGTTCTCTCTGTTCTTTTGGCATGTTTATGTCT
TTTGGAGAGACTTTTTGCCTTGGAATATTTATTAGGTCTAGTGTCATTCC
CCTGATTGTTTGTAATATCCACTGGTCTGTTGTAAGTTTCTCCCAGTTTt
ccgaaaaatattttaatcttcCCGCAAGGGGCTTTGTtatttctttgctt
gtttttatcagatttaagaGAACAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045357XLOC_045357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073140-exon-scaffold_86-1491911889:1013616..1015093TCONS_00073140-exon-scaffold_86-1491911889:1013616..1015093Clytia hemisphaericaexon
TCONS_00073140-exon-scaffold_86-1510915933:1013616..1015093TCONS_00073140-exon-scaffold_86-1510915933:1013616..1015093Clytia hemisphaericaexon
TCONS_00073140-exon-scaffold_86-1575043694:1013616..1015093TCONS_00073140-exon-scaffold_86-1575043694:1013616..1015093Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073140-proteinTCONS_00073140-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1013616..1015093 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.866675 0.708831 1.01293 1.2252 5.69299 4.14116 2.94736 2.69199 1.01304 1.48826 1.13298 0.726155 0.725146 0.444119 0.603252 1.22662 0.776534 0.752899 0.237753 0.435386 0.756858 0.780836 0.480828 0.455459 0.450247 1.17871 1.41839 1.71831 1.08606 0.600686
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR000477RT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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