TCONS_00073137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073137
Unique NameTCONS_00073137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073137 ID=TCONS_00073137|Name=TCONS_00073137|organism=Clytia hemisphaerica|type=transcript|length=850bp
TGCAAAGGAGATACTTAAAACCTTGGACAGCTATGTCTTCACACTGTTCG
CTAGCGCCTCAAAGCTTGCAAGCGACTAAAAAGCCAGCGCTATCCTTTTT
TTGGTTTATACCAGAAAAAACACTTTAATAGCTTAGTACCCGTTTTTCGT
AGTACTTTTCATTTTTGCTGAACATCATTTGTTTCGGGCCAAATTATTAG
ATTGATACTTTAGAGTCTTGAGTCAATCGAATGATGAAATCTAACGAAAT
ATCGAAAAAATACCTTTCTGCTTGGGCGTGTAGGTGGCGTTATCGTTATC
AAATGACGTTATCCTACCTGATGACAATGATTTAACGATAAACGTACCGC
TGTTTGTCGACAAAGAAAACATAGCCTGAAAAAAGAAGATTGGATACTGT
agattcaaaaaaatctttatacggtttgtccggaaaaaaatcaataaaaa
atggaAGCAATAGTCATATTGAATTTCGCAGAAATTGCTATTTATTCCTA
CAGTACCTAGCCTGGGCTTTTTTGAGGAATTAaagtccgggggggggggc
aaacaGCCCACCCCTCATAAAATTATCgaaaagtcataaaacttgGTGAT
GCATTATCACGAGAAGGTTGTTTTGGcactcaaaatttttttattgtaca
TCTTTCGATGACAACAACagtttttgtaagaacttttgcaaaaaatgcGA
AAAATGACCTCACTTCAAACTGCTATGTTAGCTCTTGAAGTAGAAATgaa
ttttcaattctgtttCGATATTCTGAAAGCCAATTAAATTCCTCACTAAC
GATTTCCAATATTTTCAGGTCTAAAGACGGTACAGTGCGCCAAAATTGTt
Run BLAST on NCBI

transcript from alignment at scaffold_86:1004256..1005105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073137 ID=TCONS_00073137|Name=TCONS_00073137|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_86:1004256..1005105 (Clytia hemisphaerica)
aACAATTTTGGCGCACTGTACCGTCTTTAGACCTGAAAATATTGGAAATC GTTAGTGAGGAATTTAATTGGCTTTCAGAATATCGaaacagaattgaaaa ttcATTTCTACTTCAAGAGCTAACATAGCAGTTTGAAGTGAGGTCATTTT TCgcattttttgcaaaagttcttacaaaaactGTTGTTGTCATCGAAAGA tgtacaataaaaaaattttgagtgCCAAAACAACCTTCTCGTGATAATGC ATCACcaagttttatgacttttcGATAATTTTATGAGGGGTGGGCtgttt gcccccccccccggacttTAATTCCTCAAAAAAGCCCAGGCTAGGTACTG TAGGAATAAATAGCAATTTCTGCGAAATTCAATATGACTATTGCTtccat tttttattgatttttttccggacaaaccgtataaagatttttttgaatct ACAGTATCCAATCTTCTTTTTTCAGGCTATGTTTTCTTTGTCGACAAACA GCGGTACGTTTATCGTTAAATCATTGTCATCAGGTAGGATAACGTCATTT GATAACGATAACGCCACCTACACGCCCAAGCAGAAAGGTATTTTTTCGAT ATTTCGTTAGATTTCATCATTCGATTGACTCAAGACTCTAAAGTATCAAT CTAATAATTTGGCCCGAAACAAATGATGTTCAGCAAAAATGAAAAGTACT ACGAAAAACGGGTACTAAGCTATTAAAGTGTTTTTTCTGGTATAAACCAA AAAAAGGATAGCGCTGGCTTTTTAGTCGCTTGCAAGCTTTGAGGCGCTAG CGAACAGTGTGAAGACATAGCTGTCCAAGGTTTTAAGTATCTCCTTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045354XLOC_045354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073137-exon-scaffold_86-1491911889:1004256..1005105TCONS_00073137-exon-scaffold_86-1491911889:1004256..1005105Clytia hemisphaericaexon
TCONS_00073137-exon-scaffold_86-1510915933:1004256..1005105TCONS_00073137-exon-scaffold_86-1510915933:1004256..1005105Clytia hemisphaericaexon
TCONS_00073137-exon-scaffold_86-1575043694:1004256..1005105TCONS_00073137-exon-scaffold_86-1575043694:1004256..1005105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1004256..1005105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166042 0.161918 0.250669 0.0613101 0.223918 0.294904 0.498106 0.532938 0.279842 0.173314 0.168223 0.0737222 0.14724 0.114682 0.0942844 0.202363 0.332393 0.170346 0 0.0615672 0.160539 0.0783054 0.317302 0.230779 2.85236 2.9169 0 0.404972 0.122863 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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