TCONS_00073137 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073137
Unique NameTCONS_00073137
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length850

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073137 ID=TCONS_00073137|Name=TCONS_00073137|organism=Clytia hemisphaerica|type=transcript|length=850bp
TGCAAAGGAGATACTTAAAACCTTGGACAGCTATGTCTTCACACTGTTCG
CTAGCGCCTCAAAGCTTGCAAGCGACTAAAAAGCCAGCGCTATCCTTTTT
TTGGTTTATACCAGAAAAAACACTTTAATAGCTTAGTACCCGTTTTTCGT
AGTACTTTTCATTTTTGCTGAACATCATTTGTTTCGGGCCAAATTATTAG
ATTGATACTTTAGAGTCTTGAGTCAATCGAATGATGAAATCTAACGAAAT
ATCGAAAAAATACCTTTCTGCTTGGGCGTGTAGGTGGCGTTATCGTTATC
AAATGACGTTATCCTACCTGATGACAATGATTTAACGATAAACGTACCGC
TGTTTGTCGACAAAGAAAACATAGCCTGAAAAAAGAAGATTGGATACTGT
agattcaaaaaaatctttatacggtttgtccggaaaaaaatcaataaaaa
atggaAGCAATAGTCATATTGAATTTCGCAGAAATTGCTATTTATTCCTA
CAGTACCTAGCCTGGGCTTTTTTGAGGAATTAaagtccgggggggggggc
aaacaGCCCACCCCTCATAAAATTATCgaaaagtcataaaacttgGTGAT
GCATTATCACGAGAAGGTTGTTTTGGcactcaaaatttttttattgtaca
TCTTTCGATGACAACAACagtttttgtaagaacttttgcaaaaaatgcGA
AAAATGACCTCACTTCAAACTGCTATGTTAGCTCTTGAAGTAGAAATgaa
ttttcaattctgtttCGATATTCTGAAAGCCAATTAAATTCCTCACTAAC
GATTTCCAATATTTTCAGGTCTAAAGACGGTACAGTGCGCCAAAATTGTt
Run BLAST on NCBI

transcript from alignment at scaffold_86:1004256..1005105

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073137 ID=TCONS_00073137|Name=TCONS_00073137|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at scaffold_86:1004256..1005105 (Clytia hemisphaerica)
aACAATTTTGGCGCACTGTACCGTCTTTAGACCTGAAAATATTGGAAATC
GTTAGTGAGGAATTTAATTGGCTTTCAGAATATCGaaacagaattgaaaa
ttcATTTCTACTTCAAGAGCTAACATAGCAGTTTGAAGTGAGGTCATTTT
TCgcattttttgcaaaagttcttacaaaaactGTTGTTGTCATCGAAAGA
tgtacaataaaaaaattttgagtgCCAAAACAACCTTCTCGTGATAATGC
ATCACcaagttttatgacttttcGATAATTTTATGAGGGGTGGGCtgttt
gcccccccccccggacttTAATTCCTCAAAAAAGCCCAGGCTAGGTACTG
TAGGAATAAATAGCAATTTCTGCGAAATTCAATATGACTATTGCTtccat
tttttattgatttttttccggacaaaccgtataaagatttttttgaatct
ACAGTATCCAATCTTCTTTTTTCAGGCTATGTTTTCTTTGTCGACAAACA
GCGGTACGTTTATCGTTAAATCATTGTCATCAGGTAGGATAACGTCATTT
GATAACGATAACGCCACCTACACGCCCAAGCAGAAAGGTATTTTTTCGAT
ATTTCGTTAGATTTCATCATTCGATTGACTCAAGACTCTAAAGTATCAAT
CTAATAATTTGGCCCGAAACAAATGATGTTCAGCAAAAATGAAAAGTACT
ACGAAAAACGGGTACTAAGCTATTAAAGTGTTTTTTCTGGTATAAACCAA
AAAAAGGATAGCGCTGGCTTTTTAGTCGCTTGCAAGCTTTGAGGCGCTAG
CGAACAGTGTGAAGACATAGCTGTCCAAGGTTTTAAGTATCTCCTTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045354XLOC_045354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073137-exon-scaffold_86-1491911889:1004256..1005105TCONS_00073137-exon-scaffold_86-1491911889:1004256..1005105Clytia hemisphaericaexon
TCONS_00073137-exon-scaffold_86-1510915933:1004256..1005105TCONS_00073137-exon-scaffold_86-1510915933:1004256..1005105Clytia hemisphaericaexon
TCONS_00073137-exon-scaffold_86-1575043694:1004256..1005105TCONS_00073137-exon-scaffold_86-1575043694:1004256..1005105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1004256..1005105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166042	0.161918	0.250669	0.0613101	0.223918	0.294904	0.498106	0.532938	0.279842	0.173314	0.168223	0.0737222	0.14724	0.114682	0.0942844	0.202363	0.332393	0.170346	0	0.0615672	0.160539	0.0783054	0.317302	0.230779	2.85236	2.9169	0	0.404972	0.122863	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073137 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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