TCONS_00073131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073131
Unique NameTCONS_00073131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073131 ID=TCONS_00073131|Name=TCONS_00073131|organism=Clytia hemisphaerica|type=transcript|length=1913bp
GCTGGTTATTGCATTTGGCATGAAACTCAATTAATGTAATGTATTTGTAA
CATGAAACTCAAATATGATTGTATTATGAACATGCTCCGAGTAGCAAATT
GtacatagtttttgaaaaaactgtcaGGGTGAGAGGCCATAAGTCTAGAT
TTAAACCAAAATAGCAGGCCATACCAACTTCTGGAATGCAGTAACAAAAA
ATGTGATTTAAAAACTAATAgtatcattttttttctcagtcCCTGTCTTG
TAAATTAGTCAGTCCAATCAATTTAACTCAATTGAATGATAGCTATTCAC
TGTGGAAAATGAAAAGCTTATTATACTCATAGCACATTGTCAATGAAAAA
TCTACTTTATTACCAATTTGTTCATTTGttttacagaaagaaaagtTCCA
CTTTTTTACCACCTTTGATCATCTTCTTGTTCAAATTCTTGACAGCTCTT
CTTGCTTCCTCATTTGTGCGAAAAGCGATAATTGCATCTCCTGAACATTG
ATTGTTGTCCAGGTAATGTATGCGTACTGATTCATCAATACGATCGTAAC
CataaaagaaattcaagatCAAATCTGTATTTATATTCATGGGTAGGTTT
CTCATCCCAACAACTCGACCACTTTTGATGTCTGCAACATTGATGTTTGC
ACTGCTGGCAACCCGGTTGATTACTGGGTCCTCCTTCTGTTGAGCTCTTG
GAGGAGGGTTTTTTGGCCTTGCAGTATGCGAGGATGCAGAATAAGATGAT
CCTCCAGAGTGCCTTCTTGGAGCACTTGTTTGTGTTGGTTTGGGCTTGTC
ATTTCTTCCAGTAGGAGAAGATTTGCTTGAAGTTGCATTTGAAACAGCTT
CATTCAATAATCCAACTAAATGTTGGATTTGGGGATTAGTGTTTGCAAGA
TCATTCAGCATGCTTAAATCAGCCTTTAATTTAGGGTGCTTCTTGTCTTC
TTCAATTGCATCAATAATATCTTCTTTGGCTGATCTCACCACTTGCATTG
GTAAACCTTCATAATTATTTCCATCACACCTCAATGCCTTAATCAGATCT
TTCTCGCTTCCCAACTTGACAATAGCACTACCATTACTTTTCCCAGCATT
GTCTCCACTTTTGAACCTTAAAAGGTAAACTCTACTAACTTCTAATGGCT
TTAAGAAGTTCTTAAAATCAGACTCTTGACATGCTGAACCCATGCCAAAA
ATGCGGACAAACCTCTTGACGTTTATATCATCTTTGCTACTGCTTgaaga
agaagattttgattGGGAATATTTGCTTCTTGAAGTAGGCGATCTTGACC
TGTGGCGATGACGTTTGTCCTCATCTTTCTTGCTGTGGGACTTTGACAAA
TCCCTTTTTTTGTTTGGCTCCCTTCTATTTGAGGTATCTTTCTTTGGAGG
ATAAGCGTATGTAGTTTTAGATATTTCAGTATCTACAAAATGTTTTGTAG
GGAAGCTTTCCATTTTTGCATATTGCTGATAACTGCCAGTTGGATATTGC
ATATCTTTCCTCTGGAAATGCATGTCTTTTTGAAAAGCAACATCTCTTTT
TGGGAGAGCTTCATTTTGGTAAGTGTTATAGGACGCAGCATAATCTTGAT
ATTCTGCTTTGGCAGAGTAAGCACCTCTTTCTTCAAAACGGGATTGGGTA
GTGTAAGGATAAGATGATTCAGCCTTGAAATTACTTTCGTAATATTGATC
ATAACCAGTAGCACCTCCTCTGTTAATCTTTCTTGTTTCGTAGTGTTCTG
ATTCGAACTTCAAATCTCCCTCCTTAGGGCGACCATACAATTTCCATTCT
TGTCCAATATTCTTAGTCATTGGTGTGTTTGGGAAGTGAGAATTAAATTC
ATGAGCACTGCTTGCATGAATATTCATTTTGTGTCCACGAAAGTAAATAC
CATCCAATTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00073131-protein

>TCONS_00073131-protein ID=TCONS_00073131-protein|Name=TCONS_00073131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
QELDGIYFRGHKMNIHASSAHEFNSHFPNTPMTKNIGQEWKLYGRPKEGD
LKFESEHYETRKINRGGATGYDQYYESNFKAESSYPYTTQSRFEERGAYS
AKAEYQDYAASYNTYQNEALPKRDVAFQKDMHFQRKDMQYPTGSYQQYAK
MESFPTKHFVDTEISKTTYAYPPKKDTSNRREPNKKRDLSKSHSKKDEDK
RHRHRSRSPTSRSKYSQSKSSSSSSSKDDINVKRFVRIFGMGSACQESDF
KNFLKPLEVSRVYLLRFKSGDNAGKSNGSAIVKLGSEKDLIKALRCDGNN
YEGLPMQVVRSAKEDIIDAIEEDKKHPKLKADLSMLNDLANTNPQIQHLV
GLLNEAVSNATSSKSSPTGRNDKPKPTQTSAPRRHSGGSSYSASSHTARP
KNPPPRAQQKEDPVINRVASSANINVADIKSGRVVGMRNLPMNINTDLIL
NFFYGYDRIDESVRIHYLDNNQCSGDAIIAFRTNEEARRAVKNLNKKMIK
GGKKVELFFL
Run BLAST on NCBI

transcript from alignment at scaffold_86:963964..965876

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073131 ID=TCONS_00073131|Name=TCONS_00073131|organism=Clytia hemisphaerica|type=transcript|length=1913bp|location=Sequence derived from alignment at scaffold_86:963964..965876 (Clytia hemisphaerica)
CAAGAATTGGATGGTATTTACTTTCGTGGACACAAAATGAATATTCATGC AAGCAGTGCTCATGAATTTAATTCTCACTTCCCAAACACACCAATGACTA AGAATATTGGACAAGAATGGAAATTGTATGGTCGCCCTAAGGAGGGAGAT TTGAAGTTCGAATCAGAACACTACGAAACAAGAAAGATTAACAGAGGAGG TGCTACTGGTTATGATCAATATTACGAAAGTAATTTCAAGGCTGAATCAT CTTATCCTTACACTACCCAATCCCGTTTTGAAGAAAGAGGTGCTTACTCT GCCAAAGCAGAATATCAAGATTATGCTGCGTCCTATAACACTTACCAAAA TGAAGCTCTCCCAAAAAGAGATGTTGCTTTTCAAAAAGACATGCATTTCC AGAGGAAAGATATGCAATATCCAACTGGCAGTTATCAGCAATATGCAAAA ATGGAAAGCTTCCCTACAAAACATTTTGTAGATACTGAAATATCTAAAAC TACATACGCTTATCCTCCAAAGAAAGATACCTCAAATAGAAGGGAGCCAA ACAAAAAAAGGGATTTGTCAAAGTCCCACAGCAAGAAAGATGAGGACAAA CGTCATCGCCACAGGTCAAGATCGCCTACTTCAAGAAGCAAATATTCCCa atcaaaatcttcttcttcAAGCAGTAGCAAAGATGATATAAACGTCAAGA GGTTTGTCCGCATTTTTGGCATGGGTTCAGCATGTCAAGAGTCTGATTTT AAGAACTTCTTAAAGCCATTAGAAGTTAGTAGAGTTTACCTTTTAAGGTT CAAAAGTGGAGACAATGCTGGGAAAAGTAATGGTAGTGCTATTGTCAAGT TGGGAAGCGAGAAAGATCTGATTAAGGCATTGAGGTGTGATGGAAATAAT TATGAAGGTTTACCAATGCAAGTGGTGAGATCAGCCAAAGAAGATATTAT TGATGCAATTGAAGAAGACAAGAAGCACCCTAAATTAAAGGCTGATTTAA GCATGCTGAATGATCTTGCAAACACTAATCCCCAAATCCAACATTTAGTT GGATTATTGAATGAAGCTGTTTCAAATGCAACTTCAAGCAAATCTTCTCC TACTGGAAGAAATGACAAGCCCAAACCAACACAAACAAGTGCTCCAAGAA GGCACTCTGGAGGATCATCTTATTCTGCATCCTCGCATACTGCAAGGCCA AAAAACCCTCCTCCAAGAGCTCAACAGAAGGAGGACCCAGTAATCAACCG GGTTGCCAGCAGTGCAAACATCAATGTTGCAGACATCAAAAGTGGTCGAG TTGTTGGGATGAGAAACCTACCCATGAATATAAATACAGATTTGatcttg aatttcttttatGGTTACGATCGTATTGATGAATCAGTACGCATACATTA CCTGGACAACAATCAATGTTCAGGAGATGCAATTATCGCTTTTCGCACAA ATGAGGAAGCAAGAAGAGCTGTCAAGAATTTGAACAAGAAGATGATCAAA GGTGGTAAAAAAGTGGAacttttctttctgtaaaaCAAATGAACAAATTG GTAATAAAGTAGATTTTTCATTGACAATGTGCTATGAGTATAATAAGCTT TTCATTTTCCACAGTGAATAGCTATCATTCAATTGAGTTAAATTGATTGG ACTGACTAATTTACAAGACAGGgactgagaaaaaaaatgatacTATTAGT TTTTAAATCACATTTTTTGTTACTGCATTCCAGAAGTTGGTATGGCCTGC TATTTTGGTTTAAATCTAGACTTATGGCCTCTCACCCtgacagttttttc aaaaactatgtaCAATTTGCTACTCGGAGCATGTTCATAATACAATCATA TTTGAGTTTCATGTTACAAATACATTACATTAATTGAGTTTCATGCCAAA TGCAATAACCAGC

Coding sequence (CDS) from alignment at scaffold_86:963964..965876

>TCONS_00073131 ID=TCONS_00073131|Name=TCONS_00073131|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_86:963964..965876 (Clytia hemisphaerica)
CAAGAATTGGATGGTATTTACTTTCGTGGACACAAAATGAATATTCATGC
AAGCAGTGCTCATGAATTTAATTCTCACTTCCCAAACACACCAATGACTA
AGAATATTGGACAAGAATGGAAATTGTATGGTCGCCCTAAGGAGGGAGAT
TTGAAGTTCGAATCAGAACACTACGAAACAAGAAAGATTAACAGAGGAGG
TGCTACTGGTTATGATCAATATTACGAAAGTAATTTCAAGGCTGAATCAT
CTTATCCTTACACTACCCAATCCCGTTTTGAAGAAAGAGGTGCTTACTCT
GCCAAAGCAGAATATCAAGATTATGCTGCGTCCTATAACACTTACCAAAA
TGAAGCTCTCCCAAAAAGAGATGTTGCTTTTCAAAAAGACATGCATTTCC
AGAGGAAAGATATGCAATATCCAACTGGCAGTTATCAGCAATATGCAAAA
ATGGAAAGCTTCCCTACAAAACATTTTGTAGATACTGAAATATCTAAAAC
TACATACGCTTATCCTCCAAAGAAAGATACCTCAAATAGAAGGGAGCCAA
ACAAAAAAAGGGATTTGTCAAAGTCCCACAGCAAGAAAGATGAGGACAAA
CGTCATCGCCACAGGTCAAGATCGCCTACTTCAAGAAGCAAATATTCCCa
atcaaaatcttcttcttcAAGCAGTAGCAAAGATGATATAAACGTCAAGA
GGTTTGTCCGCATTTTTGGCATGGGTTCAGCATGTCAAGAGTCTGATTTT
AAGAACTTCTTAAAGCCATTAGAAGTTAGTAGAGTTTACCTTTTAAGGTT
CAAAAGTGGAGACAATGCTGGGAAAAGTAATGGTAGTGCTATTGTCAAGT
TGGGAAGCGAGAAAGATCTGATTAAGGCATTGAGGTGTGATGGAAATAAT
TATGAAGGTTTACCAATGCAAGTGGTGAGATCAGCCAAAGAAGATATTAT
TGATGCAATTGAAGAAGACAAGAAGCACCCTAAATTAAAGGCTGATTTAA
GCATGCTGAATGATCTTGCAAACACTAATCCCCAAATCCAACATTTAGTT
GGATTATTGAATGAAGCTGTTTCAAATGCAACTTCAAGCAAATCTTCTCC
TACTGGAAGAAATGACAAGCCCAAACCAACACAAACAAGTGCTCCAAGAA
GGCACTCTGGAGGATCATCTTATTCTGCATCCTCGCATACTGCAAGGCCA
AAAAACCCTCCTCCAAGAGCTCAACAGAAGGAGGACCCAGTAATCAACCG
GGTTGCCAGCAGTGCAAACATCAATGTTGCAGACATCAAAAGTGGTCGAG
TTGTTGGGATGAGAAACCTACCCATGAATATAAATACAGATTTGatcttg
aatttcttttatGGTTACGATCGTATTGATGAATCAGTACGCATACATTA
CCTGGACAACAATCAATGTTCAGGAGATGCAATTATCGCTTTTCGCACAA
ATGAGGAAGCAAGAAGAGCTGTCAAGAATTTGAACAAGAAGATGATCAAA
GGTGGTAAAAAAGTGGAacttttctttctgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045348XLOC_045348Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073131-exon-scaffold_86-1491911889:963964..965876TCONS_00073131-exon-scaffold_86-1491911889:963964..965876Clytia hemisphaericaexon
TCONS_00073131-exon-scaffold_86-1510915933:963964..965876TCONS_00073131-exon-scaffold_86-1510915933:963964..965876Clytia hemisphaericaexon
TCONS_00073131-exon-scaffold_86-1575043694:963964..965876TCONS_00073131-exon-scaffold_86-1575043694:963964..965876Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073131-proteinTCONS_00073131-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:963964..965876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.96579 9.83795 8.23223 7.27761 24.7482 19.4106 13.2951 13.4778 12.1484 14.4754 8.49338 10.1523 8.22708 7.41952 10.7651 10.5964 12.3611 11.1759 5.86019 6.58881 11.3197 11.1787 12.4047 13.2102 17.408 12.3255 6.4624 4.35475 9.15921 11.4381
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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