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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073131 ID=TCONS_00073131|Name=TCONS_00073131|organism=Clytia hemisphaerica|type=transcript|length=1913bp
GCTGGTTATTGCATTTGGCATGAAACTCAATTAATGTAATGTATTTGTAA
CATGAAACTCAAATATGATTGTATTATGAACATGCTCCGAGTAGCAAATT
GtacatagtttttgaaaaaactgtcaGGGTGAGAGGCCATAAGTCTAGAT
TTAAACCAAAATAGCAGGCCATACCAACTTCTGGAATGCAGTAACAAAAA
ATGTGATTTAAAAACTAATAgtatcattttttttctcagtcCCTGTCTTG
TAAATTAGTCAGTCCAATCAATTTAACTCAATTGAATGATAGCTATTCAC
TGTGGAAAATGAAAAGCTTATTATACTCATAGCACATTGTCAATGAAAAA
TCTACTTTATTACCAATTTGTTCATTTGttttacagaaagaaaagtTCCA
CTTTTTTACCACCTTTGATCATCTTCTTGTTCAAATTCTTGACAGCTCTT
CTTGCTTCCTCATTTGTGCGAAAAGCGATAATTGCATCTCCTGAACATTG
ATTGTTGTCCAGGTAATGTATGCGTACTGATTCATCAATACGATCGTAAC
CataaaagaaattcaagatCAAATCTGTATTTATATTCATGGGTAGGTTT
CTCATCCCAACAACTCGACCACTTTTGATGTCTGCAACATTGATGTTTGC
ACTGCTGGCAACCCGGTTGATTACTGGGTCCTCCTTCTGTTGAGCTCTTG
GAGGAGGGTTTTTTGGCCTTGCAGTATGCGAGGATGCAGAATAAGATGAT
CCTCCAGAGTGCCTTCTTGGAGCACTTGTTTGTGTTGGTTTGGGCTTGTC
ATTTCTTCCAGTAGGAGAAGATTTGCTTGAAGTTGCATTTGAAACAGCTT
CATTCAATAATCCAACTAAATGTTGGATTTGGGGATTAGTGTTTGCAAGA
TCATTCAGCATGCTTAAATCAGCCTTTAATTTAGGGTGCTTCTTGTCTTC
TTCAATTGCATCAATAATATCTTCTTTGGCTGATCTCACCACTTGCATTG
GTAAACCTTCATAATTATTTCCATCACACCTCAATGCCTTAATCAGATCT
TTCTCGCTTCCCAACTTGACAATAGCACTACCATTACTTTTCCCAGCATT
GTCTCCACTTTTGAACCTTAAAAGGTAAACTCTACTAACTTCTAATGGCT
TTAAGAAGTTCTTAAAATCAGACTCTTGACATGCTGAACCCATGCCAAAA
ATGCGGACAAACCTCTTGACGTTTATATCATCTTTGCTACTGCTTgaaga
agaagattttgattGGGAATATTTGCTTCTTGAAGTAGGCGATCTTGACC
TGTGGCGATGACGTTTGTCCTCATCTTTCTTGCTGTGGGACTTTGACAAA
TCCCTTTTTTTGTTTGGCTCCCTTCTATTTGAGGTATCTTTCTTTGGAGG
ATAAGCGTATGTAGTTTTAGATATTTCAGTATCTACAAAATGTTTTGTAG
GGAAGCTTTCCATTTTTGCATATTGCTGATAACTGCCAGTTGGATATTGC
ATATCTTTCCTCTGGAAATGCATGTCTTTTTGAAAAGCAACATCTCTTTT
TGGGAGAGCTTCATTTTGGTAAGTGTTATAGGACGCAGCATAATCTTGAT
ATTCTGCTTTGGCAGAGTAAGCACCTCTTTCTTCAAAACGGGATTGGGTA
GTGTAAGGATAAGATGATTCAGCCTTGAAATTACTTTCGTAATATTGATC
ATAACCAGTAGCACCTCCTCTGTTAATCTTTCTTGTTTCGTAGTGTTCTG
ATTCGAACTTCAAATCTCCCTCCTTAGGGCGACCATACAATTTCCATTCT
TGTCCAATATTCTTAGTCATTGGTGTGTTTGGGAAGTGAGAATTAAATTC
ATGAGCACTGCTTGCATGAATATTCATTTTGTGTCCACGAAAGTAAATAC
CATCCAATTCTTG Run BLAST on NCBI protein sequence of TCONS_00073131-protein >TCONS_00073131-protein ID=TCONS_00073131-protein|Name=TCONS_00073131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
QELDGIYFRGHKMNIHASSAHEFNSHFPNTPMTKNIGQEWKLYGRPKEGD
LKFESEHYETRKINRGGATGYDQYYESNFKAESSYPYTTQSRFEERGAYS
AKAEYQDYAASYNTYQNEALPKRDVAFQKDMHFQRKDMQYPTGSYQQYAK
MESFPTKHFVDTEISKTTYAYPPKKDTSNRREPNKKRDLSKSHSKKDEDK
RHRHRSRSPTSRSKYSQSKSSSSSSSKDDINVKRFVRIFGMGSACQESDF
KNFLKPLEVSRVYLLRFKSGDNAGKSNGSAIVKLGSEKDLIKALRCDGNN
YEGLPMQVVRSAKEDIIDAIEEDKKHPKLKADLSMLNDLANTNPQIQHLV
GLLNEAVSNATSSKSSPTGRNDKPKPTQTSAPRRHSGGSSYSASSHTARP
KNPPPRAQQKEDPVINRVASSANINVADIKSGRVVGMRNLPMNINTDLIL
NFFYGYDRIDESVRIHYLDNNQCSGDAIIAFRTNEEARRAVKNLNKKMIK
GGKKVELFFL Run BLAST on NCBI transcript from alignment at scaffold_86:963964..965876 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073131 ID=TCONS_00073131|Name=TCONS_00073131|organism=Clytia hemisphaerica|type=transcript|length=1913bp|location=Sequence derived from alignment at scaffold_86:963964..965876 (Clytia hemisphaerica)
CAAGAATTGGATGGTATTTACTTTCGTGGACACAAAATGAATATTCATGC
AAGCAGTGCTCATGAATTTAATTCTCACTTCCCAAACACACCAATGACTA
AGAATATTGGACAAGAATGGAAATTGTATGGTCGCCCTAAGGAGGGAGAT
TTGAAGTTCGAATCAGAACACTACGAAACAAGAAAGATTAACAGAGGAGG
TGCTACTGGTTATGATCAATATTACGAAAGTAATTTCAAGGCTGAATCAT
CTTATCCTTACACTACCCAATCCCGTTTTGAAGAAAGAGGTGCTTACTCT
GCCAAAGCAGAATATCAAGATTATGCTGCGTCCTATAACACTTACCAAAA
TGAAGCTCTCCCAAAAAGAGATGTTGCTTTTCAAAAAGACATGCATTTCC
AGAGGAAAGATATGCAATATCCAACTGGCAGTTATCAGCAATATGCAAAA
ATGGAAAGCTTCCCTACAAAACATTTTGTAGATACTGAAATATCTAAAAC
TACATACGCTTATCCTCCAAAGAAAGATACCTCAAATAGAAGGGAGCCAA
ACAAAAAAAGGGATTTGTCAAAGTCCCACAGCAAGAAAGATGAGGACAAA
CGTCATCGCCACAGGTCAAGATCGCCTACTTCAAGAAGCAAATATTCCCa
atcaaaatcttcttcttcAAGCAGTAGCAAAGATGATATAAACGTCAAGA
GGTTTGTCCGCATTTTTGGCATGGGTTCAGCATGTCAAGAGTCTGATTTT
AAGAACTTCTTAAAGCCATTAGAAGTTAGTAGAGTTTACCTTTTAAGGTT
CAAAAGTGGAGACAATGCTGGGAAAAGTAATGGTAGTGCTATTGTCAAGT
TGGGAAGCGAGAAAGATCTGATTAAGGCATTGAGGTGTGATGGAAATAAT
TATGAAGGTTTACCAATGCAAGTGGTGAGATCAGCCAAAGAAGATATTAT
TGATGCAATTGAAGAAGACAAGAAGCACCCTAAATTAAAGGCTGATTTAA
GCATGCTGAATGATCTTGCAAACACTAATCCCCAAATCCAACATTTAGTT
GGATTATTGAATGAAGCTGTTTCAAATGCAACTTCAAGCAAATCTTCTCC
TACTGGAAGAAATGACAAGCCCAAACCAACACAAACAAGTGCTCCAAGAA
GGCACTCTGGAGGATCATCTTATTCTGCATCCTCGCATACTGCAAGGCCA
AAAAACCCTCCTCCAAGAGCTCAACAGAAGGAGGACCCAGTAATCAACCG
GGTTGCCAGCAGTGCAAACATCAATGTTGCAGACATCAAAAGTGGTCGAG
TTGTTGGGATGAGAAACCTACCCATGAATATAAATACAGATTTGatcttg
aatttcttttatGGTTACGATCGTATTGATGAATCAGTACGCATACATTA
CCTGGACAACAATCAATGTTCAGGAGATGCAATTATCGCTTTTCGCACAA
ATGAGGAAGCAAGAAGAGCTGTCAAGAATTTGAACAAGAAGATGATCAAA
GGTGGTAAAAAAGTGGAacttttctttctgtaaaaCAAATGAACAAATTG
GTAATAAAGTAGATTTTTCATTGACAATGTGCTATGAGTATAATAAGCTT
TTCATTTTCCACAGTGAATAGCTATCATTCAATTGAGTTAAATTGATTGG
ACTGACTAATTTACAAGACAGGgactgagaaaaaaaatgatacTATTAGT
TTTTAAATCACATTTTTTGTTACTGCATTCCAGAAGTTGGTATGGCCTGC
TATTTTGGTTTAAATCTAGACTTATGGCCTCTCACCCtgacagttttttc
aaaaactatgtaCAATTTGCTACTCGGAGCATGTTCATAATACAATCATA
TTTGAGTTTCATGTTACAAATACATTACATTAATTGAGTTTCATGCCAAA
TGCAATAACCAGC Coding sequence (CDS) from alignment at scaffold_86:963964..965876 >TCONS_00073131 ID=TCONS_00073131|Name=TCONS_00073131|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at scaffold_86:963964..965876 (Clytia hemisphaerica)
CAAGAATTGGATGGTATTTACTTTCGTGGACACAAAATGAATATTCATGC
AAGCAGTGCTCATGAATTTAATTCTCACTTCCCAAACACACCAATGACTA
AGAATATTGGACAAGAATGGAAATTGTATGGTCGCCCTAAGGAGGGAGAT
TTGAAGTTCGAATCAGAACACTACGAAACAAGAAAGATTAACAGAGGAGG
TGCTACTGGTTATGATCAATATTACGAAAGTAATTTCAAGGCTGAATCAT
CTTATCCTTACACTACCCAATCCCGTTTTGAAGAAAGAGGTGCTTACTCT
GCCAAAGCAGAATATCAAGATTATGCTGCGTCCTATAACACTTACCAAAA
TGAAGCTCTCCCAAAAAGAGATGTTGCTTTTCAAAAAGACATGCATTTCC
AGAGGAAAGATATGCAATATCCAACTGGCAGTTATCAGCAATATGCAAAA
ATGGAAAGCTTCCCTACAAAACATTTTGTAGATACTGAAATATCTAAAAC
TACATACGCTTATCCTCCAAAGAAAGATACCTCAAATAGAAGGGAGCCAA
ACAAAAAAAGGGATTTGTCAAAGTCCCACAGCAAGAAAGATGAGGACAAA
CGTCATCGCCACAGGTCAAGATCGCCTACTTCAAGAAGCAAATATTCCCa
atcaaaatcttcttcttcAAGCAGTAGCAAAGATGATATAAACGTCAAGA
GGTTTGTCCGCATTTTTGGCATGGGTTCAGCATGTCAAGAGTCTGATTTT
AAGAACTTCTTAAAGCCATTAGAAGTTAGTAGAGTTTACCTTTTAAGGTT
CAAAAGTGGAGACAATGCTGGGAAAAGTAATGGTAGTGCTATTGTCAAGT
TGGGAAGCGAGAAAGATCTGATTAAGGCATTGAGGTGTGATGGAAATAAT
TATGAAGGTTTACCAATGCAAGTGGTGAGATCAGCCAAAGAAGATATTAT
TGATGCAATTGAAGAAGACAAGAAGCACCCTAAATTAAAGGCTGATTTAA
GCATGCTGAATGATCTTGCAAACACTAATCCCCAAATCCAACATTTAGTT
GGATTATTGAATGAAGCTGTTTCAAATGCAACTTCAAGCAAATCTTCTCC
TACTGGAAGAAATGACAAGCCCAAACCAACACAAACAAGTGCTCCAAGAA
GGCACTCTGGAGGATCATCTTATTCTGCATCCTCGCATACTGCAAGGCCA
AAAAACCCTCCTCCAAGAGCTCAACAGAAGGAGGACCCAGTAATCAACCG
GGTTGCCAGCAGTGCAAACATCAATGTTGCAGACATCAAAAGTGGTCGAG
TTGTTGGGATGAGAAACCTACCCATGAATATAAATACAGATTTGatcttg
aatttcttttatGGTTACGATCGTATTGATGAATCAGTACGCATACATTA
CCTGGACAACAATCAATGTTCAGGAGATGCAATTATCGCTTTTCGCACAA
ATGAGGAAGCAAGAAGAGCTGTCAAGAATTTGAACAAGAAGATGATCAAA
GGTGGTAAAAAAGTGGAacttttctttctgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073131-exon-scaffold_86-1491911889:963964..965876 | TCONS_00073131-exon-scaffold_86-1491911889:963964..965876 | Clytia hemisphaerica | exon |
| TCONS_00073131-exon-scaffold_86-1510915933:963964..965876 | TCONS_00073131-exon-scaffold_86-1510915933:963964..965876 | Clytia hemisphaerica | exon |
| TCONS_00073131-exon-scaffold_86-1575043694:963964..965876 | TCONS_00073131-exon-scaffold_86-1575043694:963964..965876 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:963964..965876 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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