TCONS_00073088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073088
Unique NameTCONS_00073088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073088 ID=TCONS_00073088|Name=TCONS_00073088|organism=Clytia hemisphaerica|type=transcript|length=697bp
TTAGATGTTGGAAATGTACCGACCAAAAGTTCGCAAATATTCCCCAGTGA
AAACTTCTGTCTTCACTATGGGAGAATACGACTTTTATTTCGCAACTCGA
ACACTTGAAATAACTCCAGTAAATATGGACGAAGTACTGAAGTTCGAAGA
TGTCATAGAAATAGAAGTACCTCcggaaaaacaaaaagaacttatctttg
aagaccaaaagattCATGGGGATGAAAGTGAAAGTCACCGATCAGATTCT
TCATCTCTTGATGAGAGTTTCCAAGATTTGTCACGTCTTGACAAAGAGCA
ACAGTTAACAGCTGATAAAACATCAGTTTCTCGAGAAGGAAATTCTGATG
GTAACAAACCAGAGATGATAAACATTCAAGAGCAAGAATCTGAGTCTTCA
ATAATCGAAGAAAAGGGGAACTATGACACGAAACATGAAATCCATACGAG
ACCAATAGATGGTAGCAGACCTATCGTAGAAGAACAGCGTAATACAGAAA
AGCAACAAAATGTTGATGCAAAAACATCACAATCAGGTGTAGATTGTATT
GATCGGGAAAATTCAGCAATCAATAACAGTGAAGACGTTTGTGAAAAAAA
CAGTGCATGTGATAATCCACCAGATTCAAACATTAGTGGTTGCAAAATGT
CGCCACAATCTAATCAAGTTCTCGATGGAGACCGTATAAAAGCAGAA
Run BLAST on NCBI

protein sequence of TCONS_00073088-protein

>TCONS_00073088-protein ID=TCONS_00073088-protein|Name=TCONS_00073088-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MLEMYRPKVRKYSPVKTSVFTMGEYDFYFATRTLEITPVNMDEVLKFEDV
IEIEVPPEKQKELIFEDQKIHGDESESHRSDSSSLDESFQDLSRLDKEQQ
LTADKTSVSREGNSDGNKPEMINIQEQESESSIIEEKGNYDTKHEIHTRP
IDGSRPIVEEQRNTEKQQNVDAKTSQSGVDCIDRENSAINNSEDVCEKNS
ACDNPPDSNISGCKMSPQSNQVLDGDRIKAE
Run BLAST on NCBI

transcript from alignment at scaffold_86:1424313..1430619-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073088 ID=TCONS_00073088|Name=TCONS_00073088|organism=Clytia hemisphaerica|type=transcript|length=6307bp|location=Sequence derived from alignment at scaffold_86:1424313..1430619- (Clytia hemisphaerica)
TTAGATGTTGGAAATGTACCGACCAAAAGTTCGCAAATATTCCCCAGTGA
AAACTTCTGTCTTCACTATGGGAGAATACGACTTTTATTTCGCAACTCGA
ACACTTGAAATGTAAGATTTTAGTTTGATTTCTTTTATCTGATTGGCATC
TGATTGTGGCTTCAAGTTTGTTTTAGATAACAATAAAAAAGTATTTTGTC
AAGCTTTCGAAGTGGACTGTTAGTATTGGTATACACTTTCTACTATTTTT
TGTAAGAAAAAGTAATTTTTTGTTGAGCCTCAGCTGTTCTTATTTTTTCA
GCACTTTGTAAAAAAAACTAGAATTTAAACTACATAGGAAAGACAAGAAG
TAGAGATGGAAGCTAATCTGAAATCTACTTTACATTGAGCCTTGATGAAA
CAATTTTACAAGAGAACAACGAGACTTAAAATCGCTAAAAACTAAGACCA
ATTTAAGAACAATTGTTGTTTAATTTTTAAGAACTAATAAATAAAGGTAA
TATCACCGTCTATCAAGAGTTATTGATTTGATACTTATAAAGTATATGCT
TATAAGAAAAATAAATAAGCTCGTATTGTGTGCCATCCCTTGTTTACTTT
GTAAAAACTTATTACCTAAAGGTATATCACCGTCTATCAAGAGTTATTGA
TTTGATTCTTATAAAGTATATGCTTATAAGAAAAATAAATAAGCTCATAT
TGTGTGCCATCCCTTGTTTACTTTGTAAAAACTTATTACCGAAAGGTATA
TCACCGTCTATCAAGAGGTATTGATTTGATTCTTATAAAGTATATGCTTA
TAAGAAAAATAAATAAGCTCATTTTGTGTGCCATCGCTTGTTTACTTTGT
AACAACTTATTACCTAAAGGTATATCACCGTCTATCAAGAGTTATTGATT
TGATTCTTATAAAGTATATGCTTATAAGAAACATAAATGTACTCATATTG
TGTGCCATCCCTTGTTTACTTTGTAAAAACTTATTACCTAAAGGTATATC
ACCGTCTATCAAGAGTTATTGATTTGATTCTTATAAAGTAAATGCTTATA
AGAAAAATGAATAAGCTCATATTGTGCGCCATCCTTTATTTACTTTGTAA
AAACTTATTACCTAAAGGTATATCATCGTCTATCAAGAGGTATTGATTTG
ATTCTTATAAAGTAAATGCTTATAAGAAAAATGAATAAGCTCATATTGTG
CGCCATCCTTTATTTACTTTGTAAAAACTTATTACCTAAAGGTATATCAT
CGTCTATCAAGAGGTATTGATTTGATTCTTATAAAGTAAATGCTTATAAG
AAAAATGAATAAGCTCATATTGTGCGCCATCCTTTATTTACTTTGTAAAA
ACTTATTACCTAAAGGTATATCATCGTCTATCAAGAGGTATTGATTCGAT
TCTTATAAAGTAAATGCTTATAAGAAAAATGAATATGCTCATATTGTGCG
CCATCCTTTGTTTACTTTGTAAGAACGAATTACCGAAAGGTATATTACCC
TCTATCAAGAGTTATTGATTTGATTCTTATAAAGTAAATGCTTATAAGAA
AAATGAATAAGCTCATATTGTGCGCCATCCTTTATTTACTTTGTAAAAAC
TTATTACCTAAAGGTATATCATCGTCTATCAAGAGGTATTGATTTGATTC
TTATAAAGTATATGCTTATAAGAAAAGTAAATGTGCTCATATTGTGTGCC
ATCCTTTATTTACTTTGTAAGAACTAATTACCGAAAGGTATATTACCGTC
TATCAAGAGTTATTGATTTGATTCTTATAAAGTAAATGCTTATAAGAAAA
ATGAATAAGCTCATATTGTGCGCCATCCTTTGTTTACTTTGTAAAAACTT
ATTACCTAACGGTATATCATCGTCTATCAAGAGTTATTGATTTGATTCTT
ATAAAGTAAATGCTTATAAGAAAAATGAATAAGCTCATATTGTGCGCCAT
CCTTTGTTTACTTTGTAAAAACTTATTATTTAAAGGTATATCATCGTCTA
TCAAGAGTTATTGATTTGATTCTTATAAAGTAAATGCTTATAAGAAAAAT
GAATAAGCTCATATTGTGCGCCATCCTTTATTTACTTTGTAAAAACTTAT
TACCGAAAGGTATATCACCGTCTATCAAGAGGTATTGATTTGATTCTTAT
AAAGTAGATGCTTATAATAAAAATGAATAAGCTCATATTGTGCGCCATCC
TTTATTTACTTTGTAAAAACTTATTACCTAACGGTATATCATCGTCTATC
AAGAGTTATTGATTTGATTCTTATAAAGTAAATGCTTATAAGAAAAATAA
ATATCCTCATATTGTGCGCCATCCTGTATATCACCGTCTGTCATGAGTTT
TTGGTTTAATTCTTATAAAGTATATGCTTATAAGAAAATAAAGAAAAAAT
CACAACTGTGAAGCTAAAGACACAAAGGTATATGACGTAATCCAAAGAAA
ACCCGCGAAAATTGTCCGTGGTTATACGAGCGTGTAATTTGTAAATTAAA
TTTAGTGAGTTCGTCCACCGTATCGAGTANNNNACCGTATCGAGTACTTT
CGTTTTCTAATTTTTTTTCCGATGACACCAACACCGCCGCCGCGAAAGGC
TATCGTAATACTTTCGCTAGGCGAAATTAACAAAATTGAGTTGTCTTAGG
CTTAGATAAGCTTTTTAAATATTTCCCTACTATAGGGGAATATTTGTTAA
AACGGCCTTTTTCCGTCTTTTCTTCCATTTTCGATGTTAATGTTTTCTTT
ATTCGTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GTTGGGGCTTTAGGATAATCTGTGGGGTTCGACTGCGACTACAATCTATG
CTCTGAGCTATTGGAGGAAATATTTAACCACATCTTTGTGGCTCTTGTTT
ACTGATAATTTACTGAAAAATGAAGCCTTTCCTGATTTATCATGGATGAT
TTTTCTTAAATTTAATGTCTCGTTGTTGTTACAAAACTGTTCTGATAAAA
AAGAGAGTATACTGTCGCCAAATTAGTTCAGGAGCTGTCTTATTTTTAGT
TTTTTTCCTATTTTGACCTATGGAACTTCAAAACCAATTTTTTTTTGCCA
AGCTGGCAAAACTAGGAGAAGTATTTTCGTTAGGACATTGAAGGGAGGAG
GATCATTTTGGCTTAGAGACCCTTAGAAAGTCGATTGTGGCAAAAAGGTT
TACTGATGGTTTACTGATAGTAACATTTGTTAGATTGTTAAACTAGATCT
CTGAAATAGAGCCCGTCGACAATCTCTTCCAGGAGCAAATGCGTTTCGGA
AGGTACCGTCTATTAAAAATAGCTTATAAGGTTTCTATGGCTCGATCGAT
ATTTCAGTTTGAAATTTTGTTGAATCAGCGTTTGCGACCGGGTGTGGTGA
TTCCGAAATAGATATATTACTTGCTTGTTAATATGGGGGTTTCTTGAACA
GGGACACACGACCACAGAATATCACAATAACCGATCGATACAAAAACCTT
TTTGAATTTTTCACCTTTTAGAACTCCAGTAAATATGGACGAAGTACTGA
AGTTCGAAGATGTCATAGAAATAGAAGTACCTCCGGAAAAACAAAAAGAA
CTTATCTTTGAAGACCAAAAGATTCATGGGGATGAAAGTGAAAGTCACCG
ATCAGATTCTTCATCTCTTGATGAGAGTTTCCAAGATTTGTCACGTCTTG
ACAAAGAGCAACAGTTAACAGCTGATAAAACATCAGTTTCTCGAGAAGGA
AATTCTGATGGTAACAAACCAGAGATGATAAACATTCAAGAGCAAGAATC
TGAGTCTTCAATAATCGAAGAAAAGGGGAACTATGACACGAAACATGAAA
TCCATACGAGACCAATAGATGGTAGCAGACCTATCGTAGAAGAACAGCGT
AATACAGAAAAGCAACAAAATGTTGATGCAAAAACATCACAATCAGGTGT
AGATTGTATTGATCGGGAAAATTCAGCAATCAATAACAGTGAAGACGTTT
GTGAAAAAAACAGTGCATGTGATAATCCACCAGATTCAAACATTAGTGGT
TGCAAAATGTCGCCACAATCTAATCAAGTTCTCGATGGAGACCGTATAAA
AGCAGAA

Coding sequence (CDS) from alignment at scaffold_86:1424313..1430619-

>TCONS_00073088 ID=TCONS_00073088|Name=TCONS_00073088|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_86:1424313..1430619- (Clytia hemisphaerica)
AACTCCAGTAAATATGGACGAAGTACTGAAGTTCGAAGATGTCATAGAAA
TAGAAGTACCTCCGGAAAAACAAAAAGAACTTATCTTTGAAGACCAAAAG
ATTCATGGGGATGAAAGTGAAAGTCACCGATCAGATTCTTCATCTCTTGA
TGAGAGTTTCCAAGATTTGTCACGTCTTGACAAAGAGCAACAGTTAACAG
CTGATAAAACATCAGTTTCTCGAGAAGGAAATTCTGATGGTAACAAACCA
GAGATGATAAACATTCAAGAGCAAGAATCTGAGTCTTCAATAATCGAAGA
AAAGGGGAACTATGACACGAAACATGAAATCCATACGAGACCAATAGATG
GTAGCAGACCTATCGTAGAAGAACAGCGTAATACAGAAAAGCAACAAAAT
GTTGATGCAAAAACATCACAATCAGGTGTAGATTGTATTGATCGGGAAAA
TTCAGCAATCAATAACAGTGAAGACGTTTGTGAAAAAAACAGTGCATGTG
ATAATCCACCAGATTCAAACATTAGTGGTTGCAAAATGTCGCCACAATCT
AATCAAGTTCTCGATGGAGACCGTATAAAAGCAGAAATGTTGGAAATGTA
CCGACCAAAAGTTCGCAAATATTCCCCAGTGAAAACTTCTGTCTTCACTA
TGGGAGAATACGACTTTTATTTCGCAACTCGAACACTTGAAATAACTCCA
GTAAATATGGACGAAGTACTGAAGTTCGAAGATGTCATAGAAATAGAAGT
ACCTCCGGAAAAACAAAAAGAACTTATCTTTGAAGACCAAAAGATTCATG
GGGATGAAAGTGAAAGTCACCGATCAGATTCTTCATCTCTTGATGAGAGT
TTCCAAGATTTGTCACGTCTTGACAAAGAGCAACAGTTAACAGCTGATAA
AACATCAGTTTCTCGAGAAGGAAATTCTGATGGTAACAAACCAGAGATGA
TAAACATTCAAGAGCAAGAATCTGAGTCTTCAATAATCGAAGAAAAGGGG
AACTATGACACGAAACATGAAATCCATACGAGACCAATAGATGGTAGCAG
ACCTATCGTAGAAGAACAGCGTAATACAGAAAAGCAACAAAATGTTGATG
CAAAAACATCACAATCAGGTGTAGATTGTATTGATCGGGAAAATTCAGCA
ATCAATAACAGTGAAGACGTTTGTGAAAAAAACAGTGCATGTGATAATCC
ACCAGATTCAAACATTAGTGGTTGCAAAATGTCGCCACAATCTAATCAAG
TTCTCGATGGAGACCGTATAAAAGCAGAAATGTTGGAAATGTACCGACCA
AAAGTTCGCAAATATTCCCCAGTGAAAACTTCTGTCTTCACTATGGGAGA
ATACGACTTTTATTTCGCAACTCGAACACTTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045305XLOC_045305Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073088-proteinTCONS_00073088-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073088-exon-scaffold_86-1575043694:1430509..1430619TCONS_00073088-exon-scaffold_86-1575043694:1430509..1430619Clytia hemisphaericaexon
TCONS_00073088-exon-scaffold_86-1575043694:1424313..1424898TCONS_00073088-exon-scaffold_86-1575043694:1424313..1424898Clytia hemisphaericaexon
TCONS_00073088-exon-scaffold_86-1510915933:1430509..1430619TCONS_00073088-exon-scaffold_86-1510915933:1430509..1430619Clytia hemisphaericaexon
TCONS_00073088-exon-scaffold_86-1510915933:1424313..1424898TCONS_00073088-exon-scaffold_86-1510915933:1424313..1424898Clytia hemisphaericaexon
TCONS_00073088-exon-scaffold_86-1491911889:1430509..1430619TCONS_00073088-exon-scaffold_86-1491911889:1430509..1430619Clytia hemisphaericaexon
TCONS_00073088-exon-scaffold_86-1491911889:1424313..1424898TCONS_00073088-exon-scaffold_86-1491911889:1424313..1424898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1424313..1430619 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.141788	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	24.8996	7.10555	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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