TCONS_00073080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073080
Unique NameTCONS_00073080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073080 ID=TCONS_00073080|Name=TCONS_00073080|organism=Clytia hemisphaerica|type=transcript|length=2286bp
tgcatttattcaggttgattttttatgacttctaatagtactttttctaa
cgagtttgattactctgttctcacacttatgtctttttttttcgcgtcgt
tttccgtgattacttttatttatatttttaaagacaggtaagaaggcata
ttgatgtaactgtcctccaattgataaaaaaaattgtaccttCTTCAATG
ACTTGTTGCCCTTCTTCCTCGACACTTTCATCCCCAGAAGCATCTGTCTC
TTCCCCATTCACAGTTTCAGGAATATCCACACTATTTACAAACATTGGCA
TGATGTAAGTGCTATTGATAGTCTGGCCAATCTGAATCTGATGATGTGGT
GTGTCATCAGTCATGTGTGCATGGCTGGGtgcatttttactttttgttac
aaatcgaaagtgaaacttCTAAACCCTTTTAAAAAACCGCTGACCCAAGA
AATCGCGGGCACATCATAACAAACGACCCGTTTAAAACTACGGCCACCTC
CCGTGATTATTGAACTTTGAGCCTTTACACATTCCATAAAAGGGAATTTG
ATTGTTCTAGTGCTGAACGTTGATTGGATGAGGTGAGctgaaaagaatat
tttttacgatgtaaacaaaccttgaaaaaaattttttcgaaaaaaacttc
tACTCTCAAAAAAAGTCTGCAAAGACGAAGGGAGTGAAGAAtcaagtgaa
attttcaagaatttttgtaGAACTTTAGAGGATTTTGTCCTTTACTAACC
AGTATTTTAGCACACAACATTCGATTTATTGACAAAGGCTTGTTAGTGGT
CCTCAATCTTCGCGAGGAGGCAAATTTGAAACTTCGTAAATCGATAAAAA
GAGAATGTTTTCAGCGCTTACATCGTTGATATGGGGAACAGAACAAGAAG
AGCCTGCAGCAACTAACActcaaattgaaaacaaaaacattgacgAACAC
CTAGAAGTGGAAAACGAATGGATATACATTCAACCTAAAGaaaaatatgT
GTCCCGAAAACACAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGA
CAACTTCGGAAACTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTA
ACTCCACCACAGTGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGT
TGGCCCCATGGAAAATCTCCTTATTGAACACCCGAGCATGTCCATCTATC
ATGGGAGCCCTGAAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCA
TCTGTAGCTGTCAAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCT
GTCCTTAGAAAAACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAA
gccaaagaaaacaaaacaacagcAAAAACATGAAACGCAAAAATCAAGTT
TACGTTAGACAACATGTCACACGTAAAAACAAGCAATACGGACGTATGAC
CGGAAAACATACGGCTATGGTTGCTAAGCGAGGAGGTTTCTAAGTTCCGG
ATTTCTGTTTCCTGCACTTAGTTGCTGCTGGAAATTGATTGTTAGATGAC
AAATATGGTAAGGATGATGTACGGACGCACCCACAATAATGTTTCAAAAT
GTTTCGAAAATGCAAAAAAGAACTCACACCTAAAAAACGTTGTTTTCTGT
TGTTAATATGTGTACATTTCTAAATTATTCACtattgtttcttttttaaa
aagcgCTATATaacattgtaaaaaaaatattaaaaacacaaaaacccctg
aaatattttttgtaaagtAGATTTTAAGAGAGTTTTGTTACCCCCGGTTT
TTTTGCAAAAGGTGTGATTATTGCAAAATAACCTCGCGGTAACTTATCGG
AGTGTAGGACTTGTTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGT
AAATCCCAAATTGTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAAA
CtttaatatattttgaatattcgaaaaatatagaaaaagtcTTCATACCT
TAAAAAAATATGggactttattttatttttcttttgttatattatATGAG
GTActttggttttctttttatacacttttgaattttttcagctgtaaaaa
aaaataaggCAAAACCACAGTATACTTATTATTTATGTATATTTATGTAA
TTTAATTTCTTAGGtatgaatattttttcaaaattttagaaccaaaaaaa
ttgtaaaatattacAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAAA
AATTGTACaccaaaaaattgaactttttacaTGGAG
Run BLAST on NCBI

protein sequence of TCONS_00073080-protein

>TCONS_00073080-protein ID=TCONS_00073080-protein|Name=TCONS_00073080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MFSALTSLIWGTEQEEPAATNTQIENKNIDEHLEVENEWIYIQPKEKYVS
RKHKLRTAHFDDAASTTSETSTTAGMEESWLVTPPQCFNNRKKRHRTEVG
PMENLLIEHPSMSIYHGSPETETKGEDSAKDSSVAVKRDTHKAVAGRLLS
LEKRQPLKEMNAKTSSQRKQNNSKNMKRKNQVYVRQHVTRKNKQYGRMTG
KHTAMVAKRGGF
Run BLAST on NCBI

transcript from alignment at scaffold_86:1317945..1322118-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073080 ID=TCONS_00073080|Name=TCONS_00073080|organism=Clytia hemisphaerica|type=transcript|length=4174bp|location=Sequence derived from alignment at scaffold_86:1317945..1322118- (Clytia hemisphaerica)
TGCATTTATTCAGGTTGATTTTTTATGACTTCTAATAGTACTTTTTCTAA CGAGTTTGATTACTCTGTTCTCACACTTATGTCTTTTTTTTTCGCGTCGT TTTCCGTGATTACTTTTATTTATATTTTTAAAGACAGGTAAGAAGGCATA TTGATGTAACTGTCCTCCAATTGATAAAAAAAATTGTACCTTCTTCAATG ACTTGTTGCCCTTCTTCCTCGACACTTTCATCCCCAGAAGCATCTGTCTC TTCCCCATTCACAGTTTCAGGAATATCCACACTATTTACAAACATTGGCA TGATGTAAGTGCTATTGATAGTCTGGCCAATCTGAATCTGATGATGTGGT GTGTCATCAGTCATGTGTGCATGGCTGGGTGCATTTTTACTTTTTGTTAC AAATCGAAAGTGAAACTTCTAAACCCTTTTAAAAAACCGCTGACCCAAGA AATCGCGGGCACATCATAACAAACGACCCGTTTAAAACTACGGCCACCTC CCGTGATTATTGAACTTTGAGCCTTTACACATTCCATAAAAGGGAATTTG ATTGTTCTAGTGCTGAACGTTGATTGGATGAGGTGAGCTGAAAAGAATAT TTTTTACGATGTAAACAAACCTTGAAAAAAATTTTTTCGAAAAAAACTTC TACTCTCAAAAAAAGTCTGCAAAGACGAAGGGAGTGAAGAATCAAGTGAA ATTTTCAAGAATTTTTGTAGAACTTTAGAGGATTTTGTCCTTTACTAACC AGTATTTTAGCACACAACATTCGGTAAGTCATACAACATTAATTTCAATC ATTTCTCTTTGAAAACGTTGTCGAAAATTGCATTAACAATCTCAGAAGTC GAGGTGTCTTGTTTCAAAGAAAACAAAGCCGAAGAATTAAAATTTTCATT CTAGTTTTCTAATTGTACAAGCTTTATCTCTACTTTGGTTAGGTGGACTT TTTCATTGTATTGATGTATACTGTAGTCGAGGAGCTGATTTTCTCCGAAA AAAAGACCTACAATATCCGATCCACCTGCTGATAACCATATTCGTTGCCA AGATCTTTGTTTGGATGAACCAAGGCCCGTGTTTTATTTTTAGGCGGGTC GGGAAAGGAAATTCGAATGTTTTTTTCAACATTTTAAAATTTTGAGGATA CAAGGAAAAGAAAAAATTCTTGACTTTCTTCCTCGTTTTTATAGATTTAT TGACAAAGGCTTGTTAGTGGTCCTCAATCTTCGCGAGGAGGCAAATTTGA AACTTCGTAAATCGATAAAAAGAGAATGTTTTCAGCGCTTACATCGTTGA TATGGGGAACAGAACAAGAAGAGCCTGCAGCAACTAACACTCAAATTGAA AACAAAAACATTGACGAACACCTAGAAGTGGAAAACGAATGGATATACAT TCAACCTAAAGGTACACTATTTTTCCTTTCTTTAACCTTTCGAGTTTAAT CTACTGTATGATAGAGAAAAAAAGTCTCTTTTTAGCGCGTTGGTTGTCAA AAGGCCTCAAAAACATATCATCTCTCTCTCTGTGCTGAATGAGAATATCA TCTGTCAGAGGAAATCCTCTTTTTATAAGAATAAAAAATATAATCAGAGC TTCGCTTTGCTTTCCCTTTGCGTTTTTATGCTTATGAATAAAATATTAAA AACGATCGTGAGGTAAAAGGTAAAACAAGAGGAAAGAAAAAGAAAATTGT CTTTCCTACACCCTGAACGTTTTTCAATATTGAATTTTCCATTTGTTACT ATAAAATAATAATGAATTTTCTTTGTGTAAAGCAGTGTTCGAAGAGAGGA GATATTCACACCTGTTTTCAATAGATATTATATAATTTTTGATATTTGAA TGTTCGAACATTTGATTTTTTCTTATAGAAAAATATGTGTCCCGAAAACA CAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGACAACTTCGGAAA CTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTAACTCCACCACAG TGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGTTGGCCCCATGGA AAATCTCCTTATTGAACACCCGAGCATGTCCATCTATCATGGGAGCCCTG AAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCATCTGTAGCTGTC AAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCTGTCCTTAGAAAA ACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAAGCCAAAGAAAAC AAAACAACAGCAAAAACATGAAACGCAAAAATCAAGTTTACGTTAGACAA CATGTCACACGTAAAAACAAGCAATACGGACGTATGACCGGAAAACATAC GGCTATGGTTGCTAAGCGAGGAGGTTTCTAAGTTCCGGATTTCTGTTTCC TGCACTTAGTTGCTGCTGGAAATTGATTGTTAGATGACAAATATGGTAAG GATGATGTACGGACGCACCCACAATAATGTTTCAAAATGTTTCGAAAATG CAAAAAAGAACTCACACCTAAAAAACGTTGTTTTCTGTTGTTAATATGTG TACATTTCTAAATTATTCACTATTGTTTCTTTTTTAAAAAGCGCTATATA ACATTGTAAAAAAAATATTAAAAACACAAAAACCCCTGAAATATTTTTTG TAAAGTAGATTTTAAGAGAGTTTTGTTACCCCCGGTTTTTTTGCAAAAGG TGTGATTATTGCAAAATAACCTCGCGGTAACTTATCGGAGTGTAGGACTT GTTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGTAAATCCCAAAGT TGTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAAACTTTAATATAT TTTGAATATTCGAAAAATATAGAAAAAGTCTTCATACCTTAAAAAAATAT GGGACTTTATTTTATTTTTCTTTTGTTATATTATATGAGGTACTTTGGTT TTCTTTTTATACACTTTTGAATTTTTTCAGCTGTAAAAAAAAATAAGGCA AAACCACAGTATACTTATTATTTATGTATATTTATGTAATTTAATTTCTT AGGTATGAATATTTTTTCAAAATTTTAGAACCAAAAAAATTGTAAAATAT TACAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAAAAATTGTACACC AAAAAATTGAACTTTTTACATGGAGAATTCTGTTAATACGAAAGAGTAAT AAATAATTTTTCAAATTCAAAATTTTGATTATATGCGTTTTCCTTTATTC CTAAATTCAAATCTTTTTGTGCCCTTATTCCCCTAAAATTATCTAGTCAG TGTTATTCTATTCAACAATTCCTCCATTTCCCTAAGTCCCCCCCCCCCCG AATTTAGAATTATCTATATTATCTATAACTCGCTCCTGACCTAAATCATA CCGGTCTCAGAAACCCTAAATTTTAGCACGGTGGTAAAAACAAGGCCTTA ATGACTTGAGCCAGTGGAGAATAATATCAAAAATGACCTGTTTTGTTGAG CATTCCAGTAGCGTTAAGAGTTTACTATAATTTTCAAGTTTGGTGAGGTT TCAGCTGGGGTATTATTTCTAATAGACGATATCGGCTTAACATGAAAACT CAGATTTGATCCCCTAATATTCCCCACAATGCTTTGCGCGGAAAATATTT CACCGCGAACTTTCAGCTGGGTATTTTTCTAATTGGGGAGCATCGATTTT AAGGGTTTGGGGGTATGTCAATTCTAAAAAAGCTTTAAACATATCAGNTG TTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGTAAATCCCAAAGTT GTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAAACTTTAATATATT TTGAATATTCGAAAAATATAGAAAAAGTCTTCATACCTTAAAAAAATATG GGACTTTATTTTATTTTTCTTTTGTTATATTATATGAGGTACTTTGGTTT TCTTTTTATACACTTTTGAATTTTTTCAGCTGTAAAAAAAAATAAGGCAA AACCACAGTATACTTATTATTTATGTATATTTATGTAATTTAATTTCTTA GGTATGAATATTTTTTCAAAATTTTAGAACCAAAAAAATTGTAAAATATT ACAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAAAAATTGTACACCA AAAAATTGAACTTTTTACATGGAG

Coding sequence (CDS) from alignment at scaffold_86:1317945..1322118-

>TCONS_00073080 ID=TCONS_00073080|Name=TCONS_00073080|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_86:1317945..1322118- (Clytia hemisphaerica)
AAAAATATGTGTCCCGAAAACACAAACTTCGAACAGCCCATTTTGACGAT
GCGGCATCGACAACTTCGGAAACTAGCACTACAGCTGGTATGGAGGAGAG
CTGGCTTGTAACTCCACCACAGTGCTTCAACAATCGCAAAAAGAGACACA
GAACTGAAGTTGGCCCCATGGAAAATCTCCTTATTGAACACCCGAGCATG
TCCATCTATCATGGGAGCCCTGAAACCGAAACTAAAGGAGAGGATAGTGC
AAAGGACTCATCTGTAGCTGTCAAACGGGATACCCATAAAGCTGTTGCTG
GTCGCCTTCTGTCCTTAGAAAAACGCCAACCTTTGAAAGAAATGAATGCT
AAAACATCAAGCCAAAGAAAACAAAACAACAGCAAAAACATGAAACGCAA
AAATCAAGTTTACGTTAGACAACATGTCACACGTAAAAACAAGCAATACG
GACGTATGACCGGAAAACATACGGCTATGGTTGCTAAGCGAGGAGGTTTC
TAAATGTTTTCAGCGCTTACATCGTTGATATGGGGAACAGAACAAGAAGA
GCCTGCAGCAACTAACACTCAAATTGAAAACAAAAACATTGACGAACACC
TAGAAGTGGAAAACGAATGGATATACATTCAACCTAAAGAAAAATATGTG
TCCCGAAAACACAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGAC
AACTTCGGAAACTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTAA
CTCCACCACAGTGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGTT
GGCCCCATGGAAAATCTCCTTATTGAACACCCGAGCATGTCCATCTATCA
TGGGAGCCCTGAAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCAT
CTGTAGCTGTCAAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCTG
TCCTTAGAAAAACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAAG
CCAAAGAAAACAAAACAACAGCAAAAACATGAAACGCAAAAATCAAGTTT
ACGTTAGACAACATGTCACACGTAAAAACAAGCAATACGGACGTATGACC
GGAAAACATACGGCTATGGTTGCTAAGCGAGGAGGTTTCTAAATGTTTTC
AGCGCTTACATCGTTGATATGGGGAACAGAACAAGAAGAGCCTGCAGCAA
CTAACACTCAAATTGAAAACAAAAACATTGACGAACACCTAGAAGTGGAA
AACGAATGGATATACATTCAACCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045302XLOC_045302Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073080-proteinTCONS_00073080-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073080-exon-scaffold_86-1575043694:1321346..1322118TCONS_00073080-exon-scaffold_86-1575043694:1321346..1322118Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1575043694:1320708..1320924TCONS_00073080-exon-scaffold_86-1575043694:1320708..1320924Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1575043694:1319321..1320240TCONS_00073080-exon-scaffold_86-1575043694:1319321..1320240Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1575043694:1317945..1318320TCONS_00073080-exon-scaffold_86-1575043694:1317945..1318320Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1510915933:1321346..1322118TCONS_00073080-exon-scaffold_86-1510915933:1321346..1322118Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1510915933:1320708..1320924TCONS_00073080-exon-scaffold_86-1510915933:1320708..1320924Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1510915933:1319321..1320240TCONS_00073080-exon-scaffold_86-1510915933:1319321..1320240Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1510915933:1317945..1318320TCONS_00073080-exon-scaffold_86-1510915933:1317945..1318320Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1491911889:1321346..1322118TCONS_00073080-exon-scaffold_86-1491911889:1321346..1322118Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1491911889:1320708..1320924TCONS_00073080-exon-scaffold_86-1491911889:1320708..1320924Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1491911889:1319321..1320240TCONS_00073080-exon-scaffold_86-1491911889:1319321..1320240Clytia hemisphaericaexon
TCONS_00073080-exon-scaffold_86-1491911889:1317945..1318320TCONS_00073080-exon-scaffold_86-1491911889:1317945..1318320Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1317945..1322118 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16076 0.0164872 0.0788112 2.1039 0 0 0.447925 0 0 0 0 5.61108e-10 0 0 0.466189 0 8.03318e-09 0 0 0 9.10173e-06 2.9654e-05 2.91529e-08 8.23945e-05 0 0 0.00929496 1.15044e-06 8.86575e-05 4.57005
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029431TP53INP
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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