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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073080 ID=TCONS_00073080|Name=TCONS_00073080|organism=Clytia hemisphaerica|type=transcript|length=2286bp
tgcatttattcaggttgattttttatgacttctaatagtactttttctaa
cgagtttgattactctgttctcacacttatgtctttttttttcgcgtcgt
tttccgtgattacttttatttatatttttaaagacaggtaagaaggcata
ttgatgtaactgtcctccaattgataaaaaaaattgtaccttCTTCAATG
ACTTGTTGCCCTTCTTCCTCGACACTTTCATCCCCAGAAGCATCTGTCTC
TTCCCCATTCACAGTTTCAGGAATATCCACACTATTTACAAACATTGGCA
TGATGTAAGTGCTATTGATAGTCTGGCCAATCTGAATCTGATGATGTGGT
GTGTCATCAGTCATGTGTGCATGGCTGGGtgcatttttactttttgttac
aaatcgaaagtgaaacttCTAAACCCTTTTAAAAAACCGCTGACCCAAGA
AATCGCGGGCACATCATAACAAACGACCCGTTTAAAACTACGGCCACCTC
CCGTGATTATTGAACTTTGAGCCTTTACACATTCCATAAAAGGGAATTTG
ATTGTTCTAGTGCTGAACGTTGATTGGATGAGGTGAGctgaaaagaatat
tttttacgatgtaaacaaaccttgaaaaaaattttttcgaaaaaaacttc
tACTCTCAAAAAAAGTCTGCAAAGACGAAGGGAGTGAAGAAtcaagtgaa
attttcaagaatttttgtaGAACTTTAGAGGATTTTGTCCTTTACTAACC
AGTATTTTAGCACACAACATTCGATTTATTGACAAAGGCTTGTTAGTGGT
CCTCAATCTTCGCGAGGAGGCAAATTTGAAACTTCGTAAATCGATAAAAA
GAGAATGTTTTCAGCGCTTACATCGTTGATATGGGGAACAGAACAAGAAG
AGCCTGCAGCAACTAACActcaaattgaaaacaaaaacattgacgAACAC
CTAGAAGTGGAAAACGAATGGATATACATTCAACCTAAAGaaaaatatgT
GTCCCGAAAACACAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGA
CAACTTCGGAAACTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTA
ACTCCACCACAGTGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGT
TGGCCCCATGGAAAATCTCCTTATTGAACACCCGAGCATGTCCATCTATC
ATGGGAGCCCTGAAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCA
TCTGTAGCTGTCAAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCT
GTCCTTAGAAAAACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAA
gccaaagaaaacaaaacaacagcAAAAACATGAAACGCAAAAATCAAGTT
TACGTTAGACAACATGTCACACGTAAAAACAAGCAATACGGACGTATGAC
CGGAAAACATACGGCTATGGTTGCTAAGCGAGGAGGTTTCTAAGTTCCGG
ATTTCTGTTTCCTGCACTTAGTTGCTGCTGGAAATTGATTGTTAGATGAC
AAATATGGTAAGGATGATGTACGGACGCACCCACAATAATGTTTCAAAAT
GTTTCGAAAATGCAAAAAAGAACTCACACCTAAAAAACGTTGTTTTCTGT
TGTTAATATGTGTACATTTCTAAATTATTCACtattgtttcttttttaaa
aagcgCTATATaacattgtaaaaaaaatattaaaaacacaaaaacccctg
aaatattttttgtaaagtAGATTTTAAGAGAGTTTTGTTACCCCCGGTTT
TTTTGCAAAAGGTGTGATTATTGCAAAATAACCTCGCGGTAACTTATCGG
AGTGTAGGACTTGTTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGT
AAATCCCAAATTGTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAAA
CtttaatatattttgaatattcgaaaaatatagaaaaagtcTTCATACCT
TAAAAAAATATGggactttattttatttttcttttgttatattatATGAG
GTActttggttttctttttatacacttttgaattttttcagctgtaaaaa
aaaataaggCAAAACCACAGTATACTTATTATTTATGTATATTTATGTAA
TTTAATTTCTTAGGtatgaatattttttcaaaattttagaaccaaaaaaa
ttgtaaaatattacAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAAA
AATTGTACaccaaaaaattgaactttttacaTGGAG Run BLAST on NCBI protein sequence of TCONS_00073080-protein >TCONS_00073080-protein ID=TCONS_00073080-protein|Name=TCONS_00073080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MFSALTSLIWGTEQEEPAATNTQIENKNIDEHLEVENEWIYIQPKEKYVS
RKHKLRTAHFDDAASTTSETSTTAGMEESWLVTPPQCFNNRKKRHRTEVG
PMENLLIEHPSMSIYHGSPETETKGEDSAKDSSVAVKRDTHKAVAGRLLS
LEKRQPLKEMNAKTSSQRKQNNSKNMKRKNQVYVRQHVTRKNKQYGRMTG
KHTAMVAKRGGF Run BLAST on NCBI transcript from alignment at scaffold_86:1317945..1322118- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073080 ID=TCONS_00073080|Name=TCONS_00073080|organism=Clytia hemisphaerica|type=transcript|length=4174bp|location=Sequence derived from alignment at scaffold_86:1317945..1322118- (Clytia hemisphaerica)
TGCATTTATTCAGGTTGATTTTTTATGACTTCTAATAGTACTTTTTCTAA
CGAGTTTGATTACTCTGTTCTCACACTTATGTCTTTTTTTTTCGCGTCGT
TTTCCGTGATTACTTTTATTTATATTTTTAAAGACAGGTAAGAAGGCATA
TTGATGTAACTGTCCTCCAATTGATAAAAAAAATTGTACCTTCTTCAATG
ACTTGTTGCCCTTCTTCCTCGACACTTTCATCCCCAGAAGCATCTGTCTC
TTCCCCATTCACAGTTTCAGGAATATCCACACTATTTACAAACATTGGCA
TGATGTAAGTGCTATTGATAGTCTGGCCAATCTGAATCTGATGATGTGGT
GTGTCATCAGTCATGTGTGCATGGCTGGGTGCATTTTTACTTTTTGTTAC
AAATCGAAAGTGAAACTTCTAAACCCTTTTAAAAAACCGCTGACCCAAGA
AATCGCGGGCACATCATAACAAACGACCCGTTTAAAACTACGGCCACCTC
CCGTGATTATTGAACTTTGAGCCTTTACACATTCCATAAAAGGGAATTTG
ATTGTTCTAGTGCTGAACGTTGATTGGATGAGGTGAGCTGAAAAGAATAT
TTTTTACGATGTAAACAAACCTTGAAAAAAATTTTTTCGAAAAAAACTTC
TACTCTCAAAAAAAGTCTGCAAAGACGAAGGGAGTGAAGAATCAAGTGAA
ATTTTCAAGAATTTTTGTAGAACTTTAGAGGATTTTGTCCTTTACTAACC
AGTATTTTAGCACACAACATTCGGTAAGTCATACAACATTAATTTCAATC
ATTTCTCTTTGAAAACGTTGTCGAAAATTGCATTAACAATCTCAGAAGTC
GAGGTGTCTTGTTTCAAAGAAAACAAAGCCGAAGAATTAAAATTTTCATT
CTAGTTTTCTAATTGTACAAGCTTTATCTCTACTTTGGTTAGGTGGACTT
TTTCATTGTATTGATGTATACTGTAGTCGAGGAGCTGATTTTCTCCGAAA
AAAAGACCTACAATATCCGATCCACCTGCTGATAACCATATTCGTTGCCA
AGATCTTTGTTTGGATGAACCAAGGCCCGTGTTTTATTTTTAGGCGGGTC
GGGAAAGGAAATTCGAATGTTTTTTTCAACATTTTAAAATTTTGAGGATA
CAAGGAAAAGAAAAAATTCTTGACTTTCTTCCTCGTTTTTATAGATTTAT
TGACAAAGGCTTGTTAGTGGTCCTCAATCTTCGCGAGGAGGCAAATTTGA
AACTTCGTAAATCGATAAAAAGAGAATGTTTTCAGCGCTTACATCGTTGA
TATGGGGAACAGAACAAGAAGAGCCTGCAGCAACTAACACTCAAATTGAA
AACAAAAACATTGACGAACACCTAGAAGTGGAAAACGAATGGATATACAT
TCAACCTAAAGGTACACTATTTTTCCTTTCTTTAACCTTTCGAGTTTAAT
CTACTGTATGATAGAGAAAAAAAGTCTCTTTTTAGCGCGTTGGTTGTCAA
AAGGCCTCAAAAACATATCATCTCTCTCTCTGTGCTGAATGAGAATATCA
TCTGTCAGAGGAAATCCTCTTTTTATAAGAATAAAAAATATAATCAGAGC
TTCGCTTTGCTTTCCCTTTGCGTTTTTATGCTTATGAATAAAATATTAAA
AACGATCGTGAGGTAAAAGGTAAAACAAGAGGAAAGAAAAAGAAAATTGT
CTTTCCTACACCCTGAACGTTTTTCAATATTGAATTTTCCATTTGTTACT
ATAAAATAATAATGAATTTTCTTTGTGTAAAGCAGTGTTCGAAGAGAGGA
GATATTCACACCTGTTTTCAATAGATATTATATAATTTTTGATATTTGAA
TGTTCGAACATTTGATTTTTTCTTATAGAAAAATATGTGTCCCGAAAACA
CAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGACAACTTCGGAAA
CTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTAACTCCACCACAG
TGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGTTGGCCCCATGGA
AAATCTCCTTATTGAACACCCGAGCATGTCCATCTATCATGGGAGCCCTG
AAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCATCTGTAGCTGTC
AAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCTGTCCTTAGAAAA
ACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAAGCCAAAGAAAAC
AAAACAACAGCAAAAACATGAAACGCAAAAATCAAGTTTACGTTAGACAA
CATGTCACACGTAAAAACAAGCAATACGGACGTATGACCGGAAAACATAC
GGCTATGGTTGCTAAGCGAGGAGGTTTCTAAGTTCCGGATTTCTGTTTCC
TGCACTTAGTTGCTGCTGGAAATTGATTGTTAGATGACAAATATGGTAAG
GATGATGTACGGACGCACCCACAATAATGTTTCAAAATGTTTCGAAAATG
CAAAAAAGAACTCACACCTAAAAAACGTTGTTTTCTGTTGTTAATATGTG
TACATTTCTAAATTATTCACTATTGTTTCTTTTTTAAAAAGCGCTATATA
ACATTGTAAAAAAAATATTAAAAACACAAAAACCCCTGAAATATTTTTTG
TAAAGTAGATTTTAAGAGAGTTTTGTTACCCCCGGTTTTTTTGCAAAAGG
TGTGATTATTGCAAAATAACCTCGCGGTAACTTATCGGAGTGTAGGACTT
GTTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGTAAATCCCAAAGT
TGTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAAACTTTAATATAT
TTTGAATATTCGAAAAATATAGAAAAAGTCTTCATACCTTAAAAAAATAT
GGGACTTTATTTTATTTTTCTTTTGTTATATTATATGAGGTACTTTGGTT
TTCTTTTTATACACTTTTGAATTTTTTCAGCTGTAAAAAAAAATAAGGCA
AAACCACAGTATACTTATTATTTATGTATATTTATGTAATTTAATTTCTT
AGGTATGAATATTTTTTCAAAATTTTAGAACCAAAAAAATTGTAAAATAT
TACAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAAAAATTGTACACC
AAAAAATTGAACTTTTTACATGGAGAATTCTGTTAATACGAAAGAGTAAT
AAATAATTTTTCAAATTCAAAATTTTGATTATATGCGTTTTCCTTTATTC
CTAAATTCAAATCTTTTTGTGCCCTTATTCCCCTAAAATTATCTAGTCAG
TGTTATTCTATTCAACAATTCCTCCATTTCCCTAAGTCCCCCCCCCCCCG
AATTTAGAATTATCTATATTATCTATAACTCGCTCCTGACCTAAATCATA
CCGGTCTCAGAAACCCTAAATTTTAGCACGGTGGTAAAAACAAGGCCTTA
ATGACTTGAGCCAGTGGAGAATAATATCAAAAATGACCTGTTTTGTTGAG
CATTCCAGTAGCGTTAAGAGTTTACTATAATTTTCAAGTTTGGTGAGGTT
TCAGCTGGGGTATTATTTCTAATAGACGATATCGGCTTAACATGAAAACT
CAGATTTGATCCCCTAATATTCCCCACAATGCTTTGCGCGGAAAATATTT
CACCGCGAACTTTCAGCTGGGTATTTTTCTAATTGGGGAGCATCGATTTT
AAGGGTTTGGGGGTATGTCAATTCTAAAAAAGCTTTAAACATATCAGNTG
TTAGATTTTACTGTCGGCTTTTGGGAATCGTTTATGTAAATCCCAAAGTT
GTACATGTATTTTTGTGTGTGCGTGAGAGGGAGGGAAACTTTAATATATT
TTGAATATTCGAAAAATATAGAAAAAGTCTTCATACCTTAAAAAAATATG
GGACTTTATTTTATTTTTCTTTTGTTATATTATATGAGGTACTTTGGTTT
TCTTTTTATACACTTTTGAATTTTTTCAGCTGTAAAAAAAAATAAGGCAA
AACCACAGTATACTTATTATTTATGTATATTTATGTAATTTAATTTCTTA
GGTATGAATATTTTTTCAAAATTTTAGAACCAAAAAAATTGTAAAATATT
ACAGAGTGAAGCAAATTTTTCTTGCTACTCTTCTTAAAAATTGTACACCA
AAAAATTGAACTTTTTACATGGAG Coding sequence (CDS) from alignment at scaffold_86:1317945..1322118- >TCONS_00073080 ID=TCONS_00073080|Name=TCONS_00073080|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_86:1317945..1322118- (Clytia hemisphaerica)
AAAAATATGTGTCCCGAAAACACAAACTTCGAACAGCCCATTTTGACGAT
GCGGCATCGACAACTTCGGAAACTAGCACTACAGCTGGTATGGAGGAGAG
CTGGCTTGTAACTCCACCACAGTGCTTCAACAATCGCAAAAAGAGACACA
GAACTGAAGTTGGCCCCATGGAAAATCTCCTTATTGAACACCCGAGCATG
TCCATCTATCATGGGAGCCCTGAAACCGAAACTAAAGGAGAGGATAGTGC
AAAGGACTCATCTGTAGCTGTCAAACGGGATACCCATAAAGCTGTTGCTG
GTCGCCTTCTGTCCTTAGAAAAACGCCAACCTTTGAAAGAAATGAATGCT
AAAACATCAAGCCAAAGAAAACAAAACAACAGCAAAAACATGAAACGCAA
AAATCAAGTTTACGTTAGACAACATGTCACACGTAAAAACAAGCAATACG
GACGTATGACCGGAAAACATACGGCTATGGTTGCTAAGCGAGGAGGTTTC
TAAATGTTTTCAGCGCTTACATCGTTGATATGGGGAACAGAACAAGAAGA
GCCTGCAGCAACTAACACTCAAATTGAAAACAAAAACATTGACGAACACC
TAGAAGTGGAAAACGAATGGATATACATTCAACCTAAAGAAAAATATGTG
TCCCGAAAACACAAACTTCGAACAGCCCATTTTGACGATGCGGCATCGAC
AACTTCGGAAACTAGCACTACAGCTGGTATGGAGGAGAGCTGGCTTGTAA
CTCCACCACAGTGCTTCAACAATCGCAAAAAGAGACACAGAACTGAAGTT
GGCCCCATGGAAAATCTCCTTATTGAACACCCGAGCATGTCCATCTATCA
TGGGAGCCCTGAAACCGAAACTAAAGGAGAGGATAGTGCAAAGGACTCAT
CTGTAGCTGTCAAACGGGATACCCATAAAGCTGTTGCTGGTCGCCTTCTG
TCCTTAGAAAAACGCCAACCTTTGAAAGAAATGAATGCTAAAACATCAAG
CCAAAGAAAACAAAACAACAGCAAAAACATGAAACGCAAAAATCAAGTTT
ACGTTAGACAACATGTCACACGTAAAAACAAGCAATACGGACGTATGACC
GGAAAACATACGGCTATGGTTGCTAAGCGAGGAGGTTTCTAAATGTTTTC
AGCGCTTACATCGTTGATATGGGGAACAGAACAAGAAGAGCCTGCAGCAA
CTAACACTCAAATTGAAAACAAAAACATTGACGAACACCTAGAAGTGGAA
AACGAATGGATATACATTCAACCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073080-exon-scaffold_86-1575043694:1321346..1322118 | TCONS_00073080-exon-scaffold_86-1575043694:1321346..1322118 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1575043694:1320708..1320924 | TCONS_00073080-exon-scaffold_86-1575043694:1320708..1320924 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1575043694:1319321..1320240 | TCONS_00073080-exon-scaffold_86-1575043694:1319321..1320240 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1575043694:1317945..1318320 | TCONS_00073080-exon-scaffold_86-1575043694:1317945..1318320 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1510915933:1321346..1322118 | TCONS_00073080-exon-scaffold_86-1510915933:1321346..1322118 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1510915933:1320708..1320924 | TCONS_00073080-exon-scaffold_86-1510915933:1320708..1320924 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1510915933:1319321..1320240 | TCONS_00073080-exon-scaffold_86-1510915933:1319321..1320240 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1510915933:1317945..1318320 | TCONS_00073080-exon-scaffold_86-1510915933:1317945..1318320 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1491911889:1321346..1322118 | TCONS_00073080-exon-scaffold_86-1491911889:1321346..1322118 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1491911889:1320708..1320924 | TCONS_00073080-exon-scaffold_86-1491911889:1320708..1320924 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1491911889:1319321..1320240 | TCONS_00073080-exon-scaffold_86-1491911889:1319321..1320240 | Clytia hemisphaerica | exon |
| TCONS_00073080-exon-scaffold_86-1491911889:1317945..1318320 | TCONS_00073080-exon-scaffold_86-1491911889:1317945..1318320 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1317945..1322118 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR029431 | TP53INP |
Blast
The following BLAST results are available for this feature:
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