TCONS_00073079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073079
Unique NameTCONS_00073079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073079 ID=TCONS_00073079|Name=TCONS_00073079|organism=Clytia hemisphaerica|type=transcript|length=765bp
TTCAATGTTTctgtttttcaaatcaaaattggaGTCAGCGATCAAACGAC
TACAATTCTTTTGGCGGGGAGATTAGAAGACAACctggtttgaaatattt
tcgaaTCGAATCCGAGCATGCTTTTCAATCATGATTTGTAGAAGTGACCT
TTGATCACTGATTTGACAACTTCACAGCTACACTGCCATTATGAGTATGG
TTTTCAGTCGGGTCAACCTTGTAAAAGTTTCTATTACAATCTACATTAAA
CTTTGATTTTGGTCTGGCCCGACTGGTGCAGCAAAAAAGAAGACTATAAA
ATGGCTATCTGGAGAAATCTTTTCAGAATCAAAGGAAGGAGTAAAGGCTT
TGTTTATAGTAACTGCCAAGGATATTGTACTGGAAGCTCAaaagtttcag
aaaaatacatTCAAGGGCAATCATTTGATGACAACAATATCCGTGAATAC
TTTTATTATATAGATCATCAAGGACAgcTTTTCTTGGAAGGAACTAAGAT
AAGAAATTTTGTTACCTGCTTCAAAGataaagagtttcttgtctttttct
tcaaaagacTAAGACTCAACAAAACTGGGAAGTATGCAGACGACTTTCCT
TACATTTCAAGATGTGGACCTGAAGTAAATTATATAAGATGTGAAATGAT
GAGGATCCACCAACACATTTCGAATGGAAAGGAAAAACATACCAACTTGA
AAACGAGCTCTGGAATTCTCTGAAAGATGAAAATGTATTAGAAGATGAAG
ATTGATATTTTAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_86:1290926..1296983-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073079 ID=TCONS_00073079|Name=TCONS_00073079|organism=Clytia hemisphaerica|type=transcript|length=6058bp|location=Sequence derived from alignment at scaffold_86:1290926..1296983- (Clytia hemisphaerica)
TTCAATGTTTCTGTTTTTCAAATCAAAATTGGAGTCAGCGATCAAACGAC TACAATTCTTTTGGCGGGGAGATTAGAAGACAACCTGGTTTGAAATATTT TCGAATCGAATCCGAGCATGCTTTTCAATCATGATTTGTAGAAGTGACCT TTGATCACTGATTTGACAACTTCACAGCTACACTGCCATTATGAGTATGG TTTTCAGTCGGGTCAACCTTGTAAAAGTTTCTATTACAATCTACATTAAA CTTTGATTTTGGTCTGGCCCGACTGGTGCAGCAAAAAAGAAGACTATAAA ATGGCTATCTGGAGAAATCTTTTCAGAATCAAAGGAAGGAGTAAAGGCTT TGTTTATAGTAACTGCCAAGGATATTGTACTGGAAGCTCAAAAGTTTCAG AAAAATACATTCAAGGGCAATCATTTGATGACAACAATATCCGTGAATAC TTTTATTATATAGATCATCAAGGACAGGTTTTAAAATCATTTTTTAAACA TTTTTTAATTTTTTCAGTTTTGCAGGAGGCCCTTGCCCTATCTGTTATAA ACTCTGAACAAAGCTATATCCACCATCTTTGGTCAAAGTTGTAAACTTTC TCGTGTCCGCTCCATCATGAAAATTTTATTACGCTTCAAGGTTTCCCCCT GGGTTTCCCTGTGCATGTGGTGAAGGCTTCTTCATAAAGACGAAAGACAT GTATCTATTTTTGGGATCCGGTATGCGGGAATAGTGTCAGGACCTGCAGG CGACCTGGTAGGGTTGGGTATGGGTGTGGTTTCGGGTGTGGTTACGTATC AGATTGGCTAGGAATTGGGTTATTATCAGTTTAGGGTTGGGGTTAGGGTT GGACAGTTAGTCACACTAGCGTCCCGCCAAAATGCATATCAAAGATTAAT GCTGCGAAAGCGCTATATCGTTTGCTTGACTCTCAAGCAAAAAAATGCGC CGCAAAACTTCTAAAGGGGTTCATGAAAAAATAACCCGGCGCTTTTTAAT GAAATTAACATTTTCAACAACTTTGAGAAATTGCCTAAAATTTGAGCCAT AGATGAAAAAATTTGAGCCAAGTCAACCTTGAAAACTAATTTGAAGATCA ACTTCCCAAGAAAAAGATCTACGGGGGAGGCGGAACCCACCTAGATCCGC GCACTGTCGGGTAGGCTGTTTCCCGGAAATTTTGCCGGACCTCAAACAAT GACCCATTTACATGTGCAGAATTGTTTTTACTTTAGCGTATAAACAAGGC CTTAATAGTCGAAGCGCTGTCTCGGGAATTGAATGACAAAATTTGGTTGG TTGATATTTGGCTGCTGCACGTTCGCAATCTGTCATTTTGTCTCATTTTA TGTTTTCAAGTTTTAATTGATTGTCTTGGGATCTTGAACTTGATTCAGGT AACTCTCATCCTTGTTGTTAAAATACATCCTGTAGATGACTGATGTTGTT TTTTCTGAAAGCTTAATTTNGTTATGTACCAGATTGGCTAGGAATTGGGT TATTAACAGTTAGGGTTAGGGTTGGAGCTCGAAACAAGCACTCTTTTGTG ATTTTCTCTTAGTACAGTCTGGTCTGCAGTTTGTACAATATAAATAGCCG TCAGAAGCGCTATCTTGGCATGAATCCGTGGTGCAGTGGATAAGGATCCT GCCGACGCACCGGACTTAACGAACACCAGACACGCAAAAGTCCGGTGTAA AATGAGAATTTTGGACAAATACACCGGACAGTCCGGTGTGTCGGCAGGGT CCTAATGGATAAGGCAATGGGTTTCAAAACATCGGAACTTTGCATTTAGT GGGTTCGAATCCCACCGGTGGCGATCTGTCGGTAAGTCATTCAGTAAGTT AGAAAACATAGAAAGTAACTCACAAAGAACCAGAAAGTCAGAAAAACTAC GAACAAGAGACTGGAAAGCACAAAATAAGTCCAGATCTGTCTTTCGCCTT TGTGAAGAAGCCACAACCTTTCCCTGTCCACGATGGCAGGGTGGAGTTGG TTGGCAGTATGGTGGTCACATTGAATTCAAAAGAAAATGGGGTTCTTTTG ATCATTTTCAGTTCGCGATAAAAAGGCCTACTAAAAAATTCTTTGCATAT CAAAAGGTTGTTTTGATTTTGATATTACAGTATTGTGGAAAGCATACTAA CTAGTTTTTTTTCAAGAAAATGACACTTGCCGTATTTCTTATATACAGTA CCGTGAGTGGTCCTAAATCCGACAGCCCTGCCTAAATCTGACGTGGTCTT TCAAAGATACAAACTAAAATTAAAAAAAACCTTTTGCTGTGACGCAACAA AAATACCAAAGTGTCAACTAAACTGAGAAATTTGATACAGTAAACCAGTT GAACCAAATAATTAACAATAATTGCTTCTTATATTATACGAAACATAATT TTTTTTTGCAATTTGTCCAACATCATAAATGACAATAAAAGGTAATTACA TTCAGACTTTTACAACCCACACTTTTTAATTACATTATTGACATTTTGAC ATTATAGCCATCTTGTTAGATGTTTTCAATTTGTTTTGAGAATTCTTGCA ATAGTCTATCGTTCAACTTGGAGAGGGAGTGTATGTAAACATAGATTTTT TTCATACCTTTATTTGGGGGGTCGGAATTAGGCAGGGCTGTTGGATTTAG GACCACTCACGGTATCAACAATCTTTGGCGTGATAGGGAGAGTACAATTT AGTGATTGATTGGTAACTTTTTGTGCTTACCGTCAACTGTTCTAACTTGG GACTATTTGACAAAACATGGGACTGCAATTCTACCACCATTTCCACCATT CGTGCAAGTCAAGTTTCCAAACACAGTTATAATAAAAGTCACGAGGGTCT TCCACGGAAAATTGTGAGATAACAGTGTCAACACTCAGTAATTTTGACAT GTCAATCAATAGACCTTTTCATAAATTACGTCATGAACATCACTTGCCTC GTTTTGAAGTTATTGCCAAGGTGATTACCTCCCAGTGGATTTTATTAGAA GTACTTTCTATTCATAAAAAAATCATTTGATGTCTCAAGGGACATAATCA CCATGGTAATTGTTTGAATACGAGGCAAGTGATGTTCGTGACGTAATTTA TGAAAAGGTCTATCGTGCATGCTGGAAAAATGTCTCTATAGAGAAAAACC ACAAAAAAAGGTGTCAAGATGTGAGCAGTGTGAGTGTGATTAAATTGTTA ATTAGGCGGTCATCGAAAAAATGCTCTGTTCGCATCACAACAGGTGTTAA AAATGCATGCAGGCGGACGGGCGGTCGAAAACATTCCTGGGTTTCTTTAA TCACGCCAGTAATTCAGAGGAGTCAGGTGGTGACGTGAGCAAAAAAAATT TTCAATGGTCGTCAGAGCAATTGAGAAAAAAGCTACAGTATGTGGCCCCC AAAACGGCGATCAAATTTGAAATTTCTCTCAAATCTAGAGGAAAAGAGAT TTTACAAAAATTTTTGCTGCATGAAAACCTTTAACATCTCTACTTTATTT CCTGGAAGTTCTTTTTCAAAATTTTCAATTTCAACAATATTTTTCAATTG CTTAAAGATAGGTAGCATTTTTCTAATGGCCCCCAAAACGGAGGTTTGAA ATTTTGGCGATTTCTCAAGATATCTTTAAGATATGAATACAAAATTTTGA CCATAGTTTTGAAATATGATTTAGAGGGTTTTGGGCATAAATTTATTTGA TAAAACTTTTACAATATACCCCTGGTTGTAAAAATGCAGGTTTGGGGCCC CCAAAACGGAGGTGTAGTTAAAATCAAATTATTAAGCCTAGTGGTAATAG GGGGAAAAACTATGAACATATTTGTGTTTTCCCTTAAATTTACGACCCGA TGGATGTAAAAGTTATGATTTTTATGAAATATTTCAAGATTTTCGATATT GCAAGGTCCAAACTGAAAATTTAGAAATTTTCAAAATGACAATTTTGATT TAACAACGTCTTAATCAAGTTTTTGAAAACCAATCTCTTTTGAAAATAGT TTTTTTCTCCTATATTTTGGAAATGACAGAATTTGCCGTTTTTGCTGATT CAGCGAAAAATTTTATGTAAAATGTTAATTTTTTGTTATAAACTATTAAG TCAAGTTGATAGGAATGGAATTCCAAGATTTTTTGCTGTTTCCCATATTT AAAATTTTCGGTTTTATCAATGCTGATTCTAGGGCTCCAAAATACTGGTT GACCTTCAAGATGCTATATCTTTTACCCAGCCTCTAAAGTCAAAGATGTA TTTGCATTTTCTGAACGGCATTAGGTGTAGAAAGTTTCCTATACCCTGTG TTCATAACTTATTTTCAATATCCAAGGAGCTAGAGTGAGTTATATGCAAT TTTTATCTAATTTTGGTGTTAAAATATTTCCTTTAGACGCAAATATGTTA TTTTGAATCCGTCTCAAACCAGCAAAAACATGCTCATTTTTAAGTATAAC CATCATTCTTTCAAAATAAACAAAAATCGTTTAATGCTGATAAATCTACA AGTCAGAATCTTCATTTTAATGAAAACCTCCGTTTTGGGGGCCGTCTCCG TTTTGGGGGCCGTCTCCGTTTTAAGGGCCATATACTGTATACTTTAAAAG AACAAATTGCTTTTCCCAAATTTTTTTCCGCTGCATCTCTGCACCGGAAA ATCAGCGGAAAATATGATGCGGGCGGGTGGCGCGAATAGAACAATTTTTT GATGAACGCCTTACTTCTTCAAATTAACTTTTGAAATGCTTTAATAAAAA TACATTTGGTTGTGATTATGAGATGGTGAAAGTTTGAATGATAAACTTTT ACCAAGTTTATCAATCAAACTTTCACCATTTTTTTTCCATGTAACTTTAT TGCAATTTTCATGTCAATCAAACGCAGTCTAGTCCTTTTACATAAAAGGA AAATGTATCAATCTTCATTTAATGCCAGAAAAATGAATGAAAGAGAATAA AAAAAACCCATGTCACAAATTTTTACAAATGTCCGGATTTTGTTGCTTGT TTGTGTTCAAGCCAAATGCTATTATAAACAAAACTAAAAACATGACAAGG TATACTTGCTAATGGCCAGGGTGTGGAACACATGCAAATACTTTGGGGGA GTTGAAGTATTTAGTAGTATAGCATAGTTTCAAGTGATTTTGCTGAATAA TATATTATGAATCCAACCAAAGATGGAAGTTGTTTATTTTCTTTTAAAAT AGTTTTATATTTTTCTTTTGATTTCAGCTTTTCTTGGAAGGAACTAAGAT AAGAAATTTTGTTACCTGCTTCAAAGGTATGCCAATTCTTCAATTTTTAA AACATAGACATTGTTTCAATGCACTCATGTATTTTTGGATTCACACAACT TACTCTCGGGTACATAATAGCCTGGGGGAGGGTTGGAAAAAATCTCAAAA CTTGAGGGGGTTGGAATCCCACTGTATGATAAATTTTTGAAAAATTAATT AGTGGGAGCTTATTAAAGCTTATTACACTTATTAAGTACCCAAGAGTAGG TCTTCAATCAACTGGTTCTCTAAGCTAAAAAAAAAGAATTTGAATACAAA TCAATCCCTATTTGAATTAATTTTTCAGATAAAGAGTTTCTTGTCTTTTT CTTCAAAAGACTAAGACTCAACAAAACTGGGAAGTATGCAGACGACTTTC CTTACATTTCAAGATGTGGACCTGAAGTAAATTATATAAGATGTGAAAGT AAGCCAATAGTATTCACAGATATCATTCCTGATTCACAAAACTCTGATTC TGATCAAATTGTTTTGAATGGAATTGGTGATAAAATGGCTTACTCTTTTG AACCTTCAAAACTCTGTATGTTACCTAAGAATGGAAGGGTATATCACCCA GCCCCAAAGAGAGTTGGAGGTGCAGGGATTCTGAAAACAAGTTTAGCAAT CGAGTTCAGTTCATATTTCACCTTTGATGACAATTGCAGTGATGAGGATC CACCAACACATTTCGAATGGAAAGGAAAAACATACCAACTTGAAAACGAG CTCTGGAATTCTCTGAAAGATGAAAATGTATTAGAAGATGAAGATTGATA TTTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045299XLOC_045299Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073079-exon-scaffold_86-1575043694:1296507..1296983TCONS_00073079-exon-scaffold_86-1575043694:1296507..1296983Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1575043694:1291708..1291756TCONS_00073079-exon-scaffold_86-1575043694:1291708..1291756Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1575043694:1291286..1291405TCONS_00073079-exon-scaffold_86-1575043694:1291286..1291405Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1575043694:1290926..1291044TCONS_00073079-exon-scaffold_86-1575043694:1290926..1291044Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1510915933:1296507..1296983TCONS_00073079-exon-scaffold_86-1510915933:1296507..1296983Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1510915933:1291708..1291756TCONS_00073079-exon-scaffold_86-1510915933:1291708..1291756Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1510915933:1291286..1291405TCONS_00073079-exon-scaffold_86-1510915933:1291286..1291405Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1510915933:1290926..1291044TCONS_00073079-exon-scaffold_86-1510915933:1290926..1291044Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1491911889:1296507..1296983TCONS_00073079-exon-scaffold_86-1491911889:1296507..1296983Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1491911889:1291708..1291756TCONS_00073079-exon-scaffold_86-1491911889:1291708..1291756Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1491911889:1291286..1291405TCONS_00073079-exon-scaffold_86-1491911889:1291286..1291405Clytia hemisphaericaexon
TCONS_00073079-exon-scaffold_86-1491911889:1290926..1291044TCONS_00073079-exon-scaffold_86-1491911889:1290926..1291044Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_86supercontigscaffold_86:1290926..1296983 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.91781 2.20166 3.28604 8.85452 4.64981 2.61163 1.17181 0.332758 0.211739 0.354804 0.171249 0.796275 0 0 0.0769822 0 0 0.715135 0 0 1.21284 1.06083 2.34159 2.51083 0 0.555958 0.31489 2.82546e-09 7.48923e-05 0.505897
Blast
BLAST of TCONS_00073079 vs. Swiss-Prot (Human)
Match: CH082 (UPF0598 protein C8orf82 OS=Homo sapiens GN=C8orf82 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 9.479e-31
Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 1
Query:  337 RSKGFVYSNCQGYCTGSSKVSEKYIQGQSFDDNNIREYFYYIDHQGQLFLEGTKIRNFVTCFKDKEFLVFFFKRLRLNKTGKYADDFPYISRCGPEVNYIRCE 645
            R+     S     C+G   VS  Y QGQS  +   REYFYY+DHQGQLFL+ +K++NF+TCFKD +FLV FF RLR N++G+Y   FP++S CG E N++RCE
Sbjct:    9 RTLALARSRGARACSGDGGVS--YTQGQS-PEPRTREYFYYVDHQGQLFLDDSKMKNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCE 108          
The following BLAST results are available for this feature:
BLAST of TCONS_00073079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CH0829.479e-3152.43UPF0598 protein C8orf82 OS=Homo sapiens GN=C8orf82... [more]
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