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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073079 ID=TCONS_00073079|Name=TCONS_00073079|organism=Clytia hemisphaerica|type=transcript|length=765bp
TTCAATGTTTctgtttttcaaatcaaaattggaGTCAGCGATCAAACGAC
TACAATTCTTTTGGCGGGGAGATTAGAAGACAACctggtttgaaatattt
tcgaaTCGAATCCGAGCATGCTTTTCAATCATGATTTGTAGAAGTGACCT
TTGATCACTGATTTGACAACTTCACAGCTACACTGCCATTATGAGTATGG
TTTTCAGTCGGGTCAACCTTGTAAAAGTTTCTATTACAATCTACATTAAA
CTTTGATTTTGGTCTGGCCCGACTGGTGCAGCAAAAAAGAAGACTATAAA
ATGGCTATCTGGAGAAATCTTTTCAGAATCAAAGGAAGGAGTAAAGGCTT
TGTTTATAGTAACTGCCAAGGATATTGTACTGGAAGCTCAaaagtttcag
aaaaatacatTCAAGGGCAATCATTTGATGACAACAATATCCGTGAATAC
TTTTATTATATAGATCATCAAGGACAgcTTTTCTTGGAAGGAACTAAGAT
AAGAAATTTTGTTACCTGCTTCAAAGataaagagtttcttgtctttttct
tcaaaagacTAAGACTCAACAAAACTGGGAAGTATGCAGACGACTTTCCT
TACATTTCAAGATGTGGACCTGAAGTAAATTATATAAGATGTGAAATGAT
GAGGATCCACCAACACATTTCGAATGGAAAGGAAAAACATACCAACTTGA
AAACGAGCTCTGGAATTCTCTGAAAGATGAAAATGTATTAGAAGATGAAG
ATTGATATTTTAAAA Run BLAST on NCBI transcript from alignment at scaffold_86:1290926..1296983- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073079 ID=TCONS_00073079|Name=TCONS_00073079|organism=Clytia hemisphaerica|type=transcript|length=6058bp|location=Sequence derived from alignment at scaffold_86:1290926..1296983- (Clytia hemisphaerica)
TTCAATGTTTCTGTTTTTCAAATCAAAATTGGAGTCAGCGATCAAACGAC
TACAATTCTTTTGGCGGGGAGATTAGAAGACAACCTGGTTTGAAATATTT
TCGAATCGAATCCGAGCATGCTTTTCAATCATGATTTGTAGAAGTGACCT
TTGATCACTGATTTGACAACTTCACAGCTACACTGCCATTATGAGTATGG
TTTTCAGTCGGGTCAACCTTGTAAAAGTTTCTATTACAATCTACATTAAA
CTTTGATTTTGGTCTGGCCCGACTGGTGCAGCAAAAAAGAAGACTATAAA
ATGGCTATCTGGAGAAATCTTTTCAGAATCAAAGGAAGGAGTAAAGGCTT
TGTTTATAGTAACTGCCAAGGATATTGTACTGGAAGCTCAAAAGTTTCAG
AAAAATACATTCAAGGGCAATCATTTGATGACAACAATATCCGTGAATAC
TTTTATTATATAGATCATCAAGGACAGGTTTTAAAATCATTTTTTAAACA
TTTTTTAATTTTTTCAGTTTTGCAGGAGGCCCTTGCCCTATCTGTTATAA
ACTCTGAACAAAGCTATATCCACCATCTTTGGTCAAAGTTGTAAACTTTC
TCGTGTCCGCTCCATCATGAAAATTTTATTACGCTTCAAGGTTTCCCCCT
GGGTTTCCCTGTGCATGTGGTGAAGGCTTCTTCATAAAGACGAAAGACAT
GTATCTATTTTTGGGATCCGGTATGCGGGAATAGTGTCAGGACCTGCAGG
CGACCTGGTAGGGTTGGGTATGGGTGTGGTTTCGGGTGTGGTTACGTATC
AGATTGGCTAGGAATTGGGTTATTATCAGTTTAGGGTTGGGGTTAGGGTT
GGACAGTTAGTCACACTAGCGTCCCGCCAAAATGCATATCAAAGATTAAT
GCTGCGAAAGCGCTATATCGTTTGCTTGACTCTCAAGCAAAAAAATGCGC
CGCAAAACTTCTAAAGGGGTTCATGAAAAAATAACCCGGCGCTTTTTAAT
GAAATTAACATTTTCAACAACTTTGAGAAATTGCCTAAAATTTGAGCCAT
AGATGAAAAAATTTGAGCCAAGTCAACCTTGAAAACTAATTTGAAGATCA
ACTTCCCAAGAAAAAGATCTACGGGGGAGGCGGAACCCACCTAGATCCGC
GCACTGTCGGGTAGGCTGTTTCCCGGAAATTTTGCCGGACCTCAAACAAT
GACCCATTTACATGTGCAGAATTGTTTTTACTTTAGCGTATAAACAAGGC
CTTAATAGTCGAAGCGCTGTCTCGGGAATTGAATGACAAAATTTGGTTGG
TTGATATTTGGCTGCTGCACGTTCGCAATCTGTCATTTTGTCTCATTTTA
TGTTTTCAAGTTTTAATTGATTGTCTTGGGATCTTGAACTTGATTCAGGT
AACTCTCATCCTTGTTGTTAAAATACATCCTGTAGATGACTGATGTTGTT
TTTTCTGAAAGCTTAATTTNGTTATGTACCAGATTGGCTAGGAATTGGGT
TATTAACAGTTAGGGTTAGGGTTGGAGCTCGAAACAAGCACTCTTTTGTG
ATTTTCTCTTAGTACAGTCTGGTCTGCAGTTTGTACAATATAAATAGCCG
TCAGAAGCGCTATCTTGGCATGAATCCGTGGTGCAGTGGATAAGGATCCT
GCCGACGCACCGGACTTAACGAACACCAGACACGCAAAAGTCCGGTGTAA
AATGAGAATTTTGGACAAATACACCGGACAGTCCGGTGTGTCGGCAGGGT
CCTAATGGATAAGGCAATGGGTTTCAAAACATCGGAACTTTGCATTTAGT
GGGTTCGAATCCCACCGGTGGCGATCTGTCGGTAAGTCATTCAGTAAGTT
AGAAAACATAGAAAGTAACTCACAAAGAACCAGAAAGTCAGAAAAACTAC
GAACAAGAGACTGGAAAGCACAAAATAAGTCCAGATCTGTCTTTCGCCTT
TGTGAAGAAGCCACAACCTTTCCCTGTCCACGATGGCAGGGTGGAGTTGG
TTGGCAGTATGGTGGTCACATTGAATTCAAAAGAAAATGGGGTTCTTTTG
ATCATTTTCAGTTCGCGATAAAAAGGCCTACTAAAAAATTCTTTGCATAT
CAAAAGGTTGTTTTGATTTTGATATTACAGTATTGTGGAAAGCATACTAA
CTAGTTTTTTTTCAAGAAAATGACACTTGCCGTATTTCTTATATACAGTA
CCGTGAGTGGTCCTAAATCCGACAGCCCTGCCTAAATCTGACGTGGTCTT
TCAAAGATACAAACTAAAATTAAAAAAAACCTTTTGCTGTGACGCAACAA
AAATACCAAAGTGTCAACTAAACTGAGAAATTTGATACAGTAAACCAGTT
GAACCAAATAATTAACAATAATTGCTTCTTATATTATACGAAACATAATT
TTTTTTTGCAATTTGTCCAACATCATAAATGACAATAAAAGGTAATTACA
TTCAGACTTTTACAACCCACACTTTTTAATTACATTATTGACATTTTGAC
ATTATAGCCATCTTGTTAGATGTTTTCAATTTGTTTTGAGAATTCTTGCA
ATAGTCTATCGTTCAACTTGGAGAGGGAGTGTATGTAAACATAGATTTTT
TTCATACCTTTATTTGGGGGGTCGGAATTAGGCAGGGCTGTTGGATTTAG
GACCACTCACGGTATCAACAATCTTTGGCGTGATAGGGAGAGTACAATTT
AGTGATTGATTGGTAACTTTTTGTGCTTACCGTCAACTGTTCTAACTTGG
GACTATTTGACAAAACATGGGACTGCAATTCTACCACCATTTCCACCATT
CGTGCAAGTCAAGTTTCCAAACACAGTTATAATAAAAGTCACGAGGGTCT
TCCACGGAAAATTGTGAGATAACAGTGTCAACACTCAGTAATTTTGACAT
GTCAATCAATAGACCTTTTCATAAATTACGTCATGAACATCACTTGCCTC
GTTTTGAAGTTATTGCCAAGGTGATTACCTCCCAGTGGATTTTATTAGAA
GTACTTTCTATTCATAAAAAAATCATTTGATGTCTCAAGGGACATAATCA
CCATGGTAATTGTTTGAATACGAGGCAAGTGATGTTCGTGACGTAATTTA
TGAAAAGGTCTATCGTGCATGCTGGAAAAATGTCTCTATAGAGAAAAACC
ACAAAAAAAGGTGTCAAGATGTGAGCAGTGTGAGTGTGATTAAATTGTTA
ATTAGGCGGTCATCGAAAAAATGCTCTGTTCGCATCACAACAGGTGTTAA
AAATGCATGCAGGCGGACGGGCGGTCGAAAACATTCCTGGGTTTCTTTAA
TCACGCCAGTAATTCAGAGGAGTCAGGTGGTGACGTGAGCAAAAAAAATT
TTCAATGGTCGTCAGAGCAATTGAGAAAAAAGCTACAGTATGTGGCCCCC
AAAACGGCGATCAAATTTGAAATTTCTCTCAAATCTAGAGGAAAAGAGAT
TTTACAAAAATTTTTGCTGCATGAAAACCTTTAACATCTCTACTTTATTT
CCTGGAAGTTCTTTTTCAAAATTTTCAATTTCAACAATATTTTTCAATTG
CTTAAAGATAGGTAGCATTTTTCTAATGGCCCCCAAAACGGAGGTTTGAA
ATTTTGGCGATTTCTCAAGATATCTTTAAGATATGAATACAAAATTTTGA
CCATAGTTTTGAAATATGATTTAGAGGGTTTTGGGCATAAATTTATTTGA
TAAAACTTTTACAATATACCCCTGGTTGTAAAAATGCAGGTTTGGGGCCC
CCAAAACGGAGGTGTAGTTAAAATCAAATTATTAAGCCTAGTGGTAATAG
GGGGAAAAACTATGAACATATTTGTGTTTTCCCTTAAATTTACGACCCGA
TGGATGTAAAAGTTATGATTTTTATGAAATATTTCAAGATTTTCGATATT
GCAAGGTCCAAACTGAAAATTTAGAAATTTTCAAAATGACAATTTTGATT
TAACAACGTCTTAATCAAGTTTTTGAAAACCAATCTCTTTTGAAAATAGT
TTTTTTCTCCTATATTTTGGAAATGACAGAATTTGCCGTTTTTGCTGATT
CAGCGAAAAATTTTATGTAAAATGTTAATTTTTTGTTATAAACTATTAAG
TCAAGTTGATAGGAATGGAATTCCAAGATTTTTTGCTGTTTCCCATATTT
AAAATTTTCGGTTTTATCAATGCTGATTCTAGGGCTCCAAAATACTGGTT
GACCTTCAAGATGCTATATCTTTTACCCAGCCTCTAAAGTCAAAGATGTA
TTTGCATTTTCTGAACGGCATTAGGTGTAGAAAGTTTCCTATACCCTGTG
TTCATAACTTATTTTCAATATCCAAGGAGCTAGAGTGAGTTATATGCAAT
TTTTATCTAATTTTGGTGTTAAAATATTTCCTTTAGACGCAAATATGTTA
TTTTGAATCCGTCTCAAACCAGCAAAAACATGCTCATTTTTAAGTATAAC
CATCATTCTTTCAAAATAAACAAAAATCGTTTAATGCTGATAAATCTACA
AGTCAGAATCTTCATTTTAATGAAAACCTCCGTTTTGGGGGCCGTCTCCG
TTTTGGGGGCCGTCTCCGTTTTAAGGGCCATATACTGTATACTTTAAAAG
AACAAATTGCTTTTCCCAAATTTTTTTCCGCTGCATCTCTGCACCGGAAA
ATCAGCGGAAAATATGATGCGGGCGGGTGGCGCGAATAGAACAATTTTTT
GATGAACGCCTTACTTCTTCAAATTAACTTTTGAAATGCTTTAATAAAAA
TACATTTGGTTGTGATTATGAGATGGTGAAAGTTTGAATGATAAACTTTT
ACCAAGTTTATCAATCAAACTTTCACCATTTTTTTTCCATGTAACTTTAT
TGCAATTTTCATGTCAATCAAACGCAGTCTAGTCCTTTTACATAAAAGGA
AAATGTATCAATCTTCATTTAATGCCAGAAAAATGAATGAAAGAGAATAA
AAAAAACCCATGTCACAAATTTTTACAAATGTCCGGATTTTGTTGCTTGT
TTGTGTTCAAGCCAAATGCTATTATAAACAAAACTAAAAACATGACAAGG
TATACTTGCTAATGGCCAGGGTGTGGAACACATGCAAATACTTTGGGGGA
GTTGAAGTATTTAGTAGTATAGCATAGTTTCAAGTGATTTTGCTGAATAA
TATATTATGAATCCAACCAAAGATGGAAGTTGTTTATTTTCTTTTAAAAT
AGTTTTATATTTTTCTTTTGATTTCAGCTTTTCTTGGAAGGAACTAAGAT
AAGAAATTTTGTTACCTGCTTCAAAGGTATGCCAATTCTTCAATTTTTAA
AACATAGACATTGTTTCAATGCACTCATGTATTTTTGGATTCACACAACT
TACTCTCGGGTACATAATAGCCTGGGGGAGGGTTGGAAAAAATCTCAAAA
CTTGAGGGGGTTGGAATCCCACTGTATGATAAATTTTTGAAAAATTAATT
AGTGGGAGCTTATTAAAGCTTATTACACTTATTAAGTACCCAAGAGTAGG
TCTTCAATCAACTGGTTCTCTAAGCTAAAAAAAAAGAATTTGAATACAAA
TCAATCCCTATTTGAATTAATTTTTCAGATAAAGAGTTTCTTGTCTTTTT
CTTCAAAAGACTAAGACTCAACAAAACTGGGAAGTATGCAGACGACTTTC
CTTACATTTCAAGATGTGGACCTGAAGTAAATTATATAAGATGTGAAAGT
AAGCCAATAGTATTCACAGATATCATTCCTGATTCACAAAACTCTGATTC
TGATCAAATTGTTTTGAATGGAATTGGTGATAAAATGGCTTACTCTTTTG
AACCTTCAAAACTCTGTATGTTACCTAAGAATGGAAGGGTATATCACCCA
GCCCCAAAGAGAGTTGGAGGTGCAGGGATTCTGAAAACAAGTTTAGCAAT
CGAGTTCAGTTCATATTTCACCTTTGATGACAATTGCAGTGATGAGGATC
CACCAACACATTTCGAATGGAAAGGAAAAACATACCAACTTGAAAACGAG
CTCTGGAATTCTCTGAAAGATGAAAATGTATTAGAAGATGAAGATTGATA
TTTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073079-exon-scaffold_86-1575043694:1296507..1296983 | TCONS_00073079-exon-scaffold_86-1575043694:1296507..1296983 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1575043694:1291708..1291756 | TCONS_00073079-exon-scaffold_86-1575043694:1291708..1291756 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1575043694:1291286..1291405 | TCONS_00073079-exon-scaffold_86-1575043694:1291286..1291405 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1575043694:1290926..1291044 | TCONS_00073079-exon-scaffold_86-1575043694:1290926..1291044 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1510915933:1296507..1296983 | TCONS_00073079-exon-scaffold_86-1510915933:1296507..1296983 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1510915933:1291708..1291756 | TCONS_00073079-exon-scaffold_86-1510915933:1291708..1291756 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1510915933:1291286..1291405 | TCONS_00073079-exon-scaffold_86-1510915933:1291286..1291405 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1510915933:1290926..1291044 | TCONS_00073079-exon-scaffold_86-1510915933:1290926..1291044 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1491911889:1296507..1296983 | TCONS_00073079-exon-scaffold_86-1491911889:1296507..1296983 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1491911889:1291708..1291756 | TCONS_00073079-exon-scaffold_86-1491911889:1291708..1291756 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1491911889:1291286..1291405 | TCONS_00073079-exon-scaffold_86-1491911889:1291286..1291405 | Clytia hemisphaerica | exon |
| TCONS_00073079-exon-scaffold_86-1491911889:1290926..1291044 | TCONS_00073079-exon-scaffold_86-1491911889:1290926..1291044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_86 | supercontig | scaffold_86:1290926..1296983 - |
Blast
BLAST of TCONS_00073079 vs. Swiss-Prot (Human)
Match: CH082 (UPF0598 protein C8orf82 OS=Homo sapiens GN=C8orf82 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 9.479e-31 Identity = 54/103 (52.43%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 337 RSKGFVYSNCQGYCTGSSKVSEKYIQGQSFDDNNIREYFYYIDHQGQLFLEGTKIRNFVTCFKDKEFLVFFFKRLRLNKTGKYADDFPYISRCGPEVNYIRCE 645
R+ S C+G VS Y QGQS + REYFYY+DHQGQLFL+ +K++NF+TCFKD +FLV FF RLR N++G+Y FP++S CG E N++RCE
Sbjct: 9 RTLALARSRGARACSGDGGVS--YTQGQS-PEPRTREYFYYVDHQGQLFLDDSKMKNFITCFKDPQFLVTFFSRLRPNRSGRYEAAFPFLSPCGRERNFLRCE 108
The following BLAST results are available for this feature:
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