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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073025 ID=TCONS_00073025|Name=TCONS_00073025|organism=Clytia hemisphaerica|type=transcript|length=2973bpRun BLAST on NCBI protein sequence of TCONS_00073025-protein >TCONS_00073025-protein ID=TCONS_00073025-protein|Name=TCONS_00073025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=497bp MIYNVMADKENDEIITIEAVCEFLQKRNGKARQAELVNHFRKQLNSPNTKRun BLAST on NCBI transcript from alignment at scaffold_86:831650..866345- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073025 ID=TCONS_00073025|Name=TCONS_00073025|organism=Clytia hemisphaerica|type=transcript|length=34696bp|location=Sequence derived from alignment at scaffold_86:831650..866345- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:831650..866345- >TCONS_00073025 ID=TCONS_00073025|Name=TCONS_00073025|organism=Clytia hemisphaerica|type=CDS|length=19422bp|location=Sequence derived from alignment at scaffold_86:831650..866345- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073025 vs. Swiss-Prot (Human)
Match: SWAHC (Ankyrin repeat domain-containing protein SOWAHC OS=Homo sapiens GN=SOWAHC PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.778e-23 Identity = 52/130 (40.00%), Postives = 82/130 (63.08%), Query Frame = 2
Query: 716 PEEKSWMLAAAHGNIKKLESLLKEYPSLAKKKDFVMGYTALHWAAKLGRTDIVKFIMG-AN-----VDIHSKSHGGYTPLHIAAMSGRDQVIVQLIELYNANIHTRDHSGKKPRDVVKDTVAADVQRKLG 1087
P E +WML+A+ G LE LL P L K+DF+ G+T LHWAAK GR +++ ++ AN V+I +++ GGYT LH+AAM G +V+ L+ Y+A++ RD+SGKK + ++A +++ +G
Sbjct: 266 PLEHAWMLSASDGKWDSLEGLLTCEPGLLVKRDFITGFTCLHWAAKHGRQELLAMLVNFANKHQLPVNIDARTSGGYTALHLAAMHGHVEVVKLLVGAYDADVDIRDYSGKKASQYLSRSIAEEIKNLVG 395 The following BLAST results are available for this feature:
BLAST of TCONS_00073025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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