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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073009 ID=TCONS_00073009|Name=TCONS_00073009|organism=Clytia hemisphaerica|type=transcript|length=2148bpRun BLAST on NCBI protein sequence of TCONS_00073009-protein >TCONS_00073009-protein ID=TCONS_00073009-protein|Name=TCONS_00073009-protein|organism=Clytia hemisphaerica|type=polypeptide|length=278bp MAAEKEKTAPFVKKFNGIEKLSSEEFLLIFRKYDKDGNGYIERGELDRFLRun BLAST on NCBI transcript from alignment at scaffold_86:757713..773298- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073009 ID=TCONS_00073009|Name=TCONS_00073009|organism=Clytia hemisphaerica|type=transcript|length=15586bp|location=Sequence derived from alignment at scaffold_86:757713..773298- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_86:757713..773298- >TCONS_00073009 ID=TCONS_00073009|Name=TCONS_00073009|organism=Clytia hemisphaerica|type=CDS|length=9207bp|location=Sequence derived from alignment at scaffold_86:757713..773298- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073009 vs. Swiss-Prot (Human)
Match: CALB2 (Calretinin OS=Homo sapiens GN=CALB2 PE=2 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 4.633e-52 Identity = 105/281 (37.37%), Postives = 176/281 (62.63%), Query Frame = 1
Query: 109 AEKEKTAPFVKKFNGIEKLSSEEFLLIFRKYDKDGNGYIERGELDRFLSDILRQK-----LANAQDLDELRKTILDKYDTNADGKISLSELALILPTQENYLSAIVNNNRLHV---VDFMKIWYHYDRDKSGYLEKSELKGFIRDFLLRSLKFDDKITPQVIDERTEKVLETFDKNKDGKIEISELAKFLNVQDNFLMKFKNENDALSAEQFDAIFNHYDTDGNGYIEDVELLAFLRDLLQNKRRDPTSKDLEMYRSCILEISDKDNDGKLSKAELKILLI 927
A ++ P++ + +L++ +FL I++ +D DGNGYIE EL+ F ++ + + ++ + + E K + KYD N+DGKI ++ELA ILPT+EN+L R HV +FM+ W YD D+SGY+E +ELKGF+ D L ++ + D+ P+ + E T+ +L FD N DGK+ +SE+++ L VQ+NFL+KF+ L++E+F+AIF YD D +GYI++ EL A L+DL + +++ + L YR ++ +++ GKL + +L+I+L
Sbjct: 2 AGPQQQPPYLH----LAELTASQFLEIWKHFDADGNGYIEGKELENFFQELEKARKGSGMMSKSDNFGEKMKEFMQKYDKNSDGKIEMAELAQILPTEENFLLCF----RQHVGSSAEFMEAWRKYDTDRSGYIEANELKGFLSDLLKKANRPYDE--PK-LQEYTQTILRMFDLNGDGKLGLSEMSRLLPVQENFLLKFQGMK--LTSEEFNAIFTFYDKDRSGYIDEHELDALLKDLYEKNKKEMNIQQLTNYRKSVMSLAEA---GKLYRKDLEIVLC 266 The following BLAST results are available for this feature:
BLAST of TCONS_00073009 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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